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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0010400 |
| Transcript ID | LotjaGi6g1v0010400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Inner membrane protein YidG; TAIR: AT1G04555.1 transmembrane protein; Swiss-Prot: sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1; TrEMBL-Plants: tr|I3T666|I3T666_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0010400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1930339..1937231) extracted from Lotus japonicus Gifu genome v1.2.
CATCTCTGTTCTCTCTCCTCATCCTCATCTTCATCTACAAAATCAACATTTTTCTTCTTCAGTCATCCTACTCCCTTCAA ATTCCCCTTCTTAAAAACCTCCAACACTGCCGATTCTCCTCTCTGAACACAGAACCGTTGAATCCTTTCACTGAACCCAC ACCGTTGAATCCCTCAATCTCGTCCCTCAGCTTCTCCTAACCCAGATCTGGGCATAAGTGTGGGCGAGATGAAGTAGTGG TGATTCAGCGGACTTGGGTCTCTATGCGGTGGTGGTTCGGCGCGGCGCGGCGTGATTTGCACGATGCTGGCACTGGTCTG GTCGTGCGATTCACAGCGGAGGGGCGTTGCTTTCGTTGCTTTCACTGGGTTTAGTTTGCTGTTACTGTGGTTGTGGCTTC TTTTCACTGGGTTTAATTTATTGTGGTTGTGGCTTTATATTGTTGTGGCTTCTTTTCACAGTGGATTCATTTTCTGCAGC ATGCTTATATAGGAGGTCAAAATTGTAGGTTCAAATTGCAGAAGAACTTTTGGATTCTATCCAATTCAAGAGTTGGATTT GGTTGAGTGCTAAAACTCCAGGGTTCCCGTATTCTCAATTGATCTCCAATCCTATGCATTTCCTGAATTGTATCTAATAT GGACAGATTTGAAGCCTTGAGGGTTGAGTTTGTTACTACAGCTACGGGGTTCTTTTTGATTTCATATTCATGTAGCTCTA TATCTGGTCTGTCTCGTTTTAATTTATTTTTGCTGGTTATTGTCAAAAGAATAAGTTTGTTGTGGCTGGCAAAGAAATAG CATTGTTGAAGACCAGCCATGGAAGAATGAATCCAAGTGTGTGATCTGGGTTTTATGGGCAAGGTGATGTATTTGTAGGG AAGATGAAGATGTTTTGGAGAGGAATATTTTTTTTCTGGGTTTTCTAGGTTGATGAAGATGATGAGGGAGATGAAGAAGG GGATATTTTTCTTGGTTTTTAAGTGTTGTTAATATTTTAATGAATTAATTTTTTTGCTCAATTACATATTTACCCTCAGA ACGGTTAGTTTTTGGACGGAAAATTGCTGAGGGACCAAAACTGTTAACAGAGATAAACGTTGAGGTACCATTATGCTATT TTTAAACGTGGGGGATTAATATTGCACATTTTTGAAACATGGGGGACAAAAAGTGCTATTAAGCCAAAGTATATTCATCC CAATTTGTAAACAAGATAAATCGATTTTGGAAATTTTTGAACATTTACCGAAGCCAAATTCAGTAGGTAGAAACATACCT ACCTTTTCCTAATTTCAATGGAGAGCTGAGATAGTGATCAAACACGTTGAGGTCCCACGGCGTGAATATAGGAGCATAGG AATCAAGAATTTCTTGAAAAGCTTCACCATTTTCTTCACGTCAACGTTGATAGCAAGCCCATACCTGTGACAAAAAATGG AGGTGCAACAATGGTGGAGGCTTAGATTCTCCTTCAGGAGTGCTACCATGGTGGTGTGCTTTCTCAACATAGTCACTGCG ATCTTCTTGCTTCATGGCTTTCTTGCTTCTTCCTACACTCGCAACAAACTGTCCACCGCAAACTCAAACTCAGGTTGGTC CCCTTCTCTCTTTCCTGTCAATTTTTGCTTTCTCATGTGAAATTTCTATCCTTTGGGCTGAAATAGATCATGGGTATTAG ATATTTTCGTTGATCATGCCTTAAAGTTAAGATTTTTCTGGTAAAGTTTGTGGCTTTTTGTGTGATTACATGAAGGGGGG TGAATTTGTGTTTGTTCTTGATAAAAACTAAATTTTGTGAAACTAAATATCCTGTAAGATGTAATCAAATATCTTTATCC GAATTAACATATCCTGTAATAGATTTAGGATTTTTTGTATATAAGTTTCATGATAGTTATCTAAATTCTCTGCTTGAAGT GTAGCAAAGCATTACTCCAATCAATCCCAAAGGCTTTATTCCTTATGTGAAGGACAAGAATTGGTTTTCATTTCTACATT CTCATTTTGAACATTAGACAATTTAGCATCATATAAATAGCACTGATTCTTTTAGGAAATTCCTATAATAGACTAGTATA CTGTGGAGTATATGTTAAACTTGCTTGTATGATGTTTTCTTATTTTATTTTATTTAAAATTGCAGCTCAGCTCAGTTACA TCAAGGAATCTGAAGAGATTCGTCTTGCCATGTTACCATTGGAGCTGATTAAAAGAGTGAGTTTGTAACTGGTTTTGTTG TTCACCATATTTATTATGACCGTTTGTTGTAGATGAATGATGCCCAAGTGCCAGTTCTATAGTTAGCGATAGAGAAATAA TTTTTGTAGAAAGCAATTTGAGCATTTTTCTGGCAAATGATGGTTTATTTTAGAATTTCTGGAGCTGACCTGAAACCTGG TGTTGGGTTTTTCAATTCATCCTCTAGTTGGAAGACTAGTAGGTCATGTTTCAAATTATTCACACACATAGGGTTTGCCT TATACTCAGTTTTGTGTGAAGTGATTTTTTCTAATGACTTGCATGCGCTACCTGTCTCAGTTAGTCTTTCTCCTGTTAAC CTGAATTACAATGTACGTTTTTATACTCATCTTTCTGGTACAACGCTGAAAATTTTATTGTTTCTGCAAAATCCGTTTGT TTTTACCTTGATTGTGAAGTCAACTGATGGTCAATGAATGAGAATACAAAAGAGTTTATTACCATCACCTACCAGTGACA GTAACTAGCAGCTCACCGACATCAGATGCTCAGAACTTCTTAGAACCTGTAATTTTTCCCTGTACTTAGTCTGATCAGAG GTCATGTGATATGGGCCTCCAATGAGGGTGTATCGCAGAAGAAAGAAGGGGTGCAGGGGTAGGATGGGAAGTAGTGGAGG GAATCTGTTCCTAGAGGACGCAAGAGGATTAATCACATTGAAGGAAAAACCCATGCTGAGACAGATCAACAATATGACAC ATGGGTTGATGAAGATTCTCTCATTATGACCTAGTTTTGGCACTCTATGACTCCGTAGATTGGCCAGACTTATATGTTTT TCCCTACTGCTAGGGAGATTTGGAAGAATTTGGCGCAAACATATTCTATGAAACATGACTCTCAGCCTATTTAAAAATTG GAAAATAAAGTTTTCAATTCTAAGCAGGGAAACCTTGAATGGTCTCTTGATTGAATTGGATCAATTTCAGAGTTTGACGA TGAAGTGTGATGAAGACTCTACGGCACTGACCCAGTTTATTGAGAAAGCACGGATCTTTAAGTTTCTCTCTGGGCTAAAC TCTAAGTTTGATCTCATTCGGGTTCAATTTCTGTGTCAGGAGAAACTCCCTTAGAAACACAGTTCGTGGTGTGGAAAGTC AGAGGACAGTGATGACGGAGAAAAGTCAGTTGATGGTTAGGCCTTAGCCTCTAGAAAGGATCCCATAAAAGGCTACACTT CGCTCGAACGGCCTAACCGTGACAATGGATTGTGCACTTACAGTAAGAAGTCTGGCCACACTAAAGAGATTTGTTTCAAG CTTCATAGAAGGGATACAGTCCTTGGACGTATGGGCGGGGGCAAAGGTGCTCTTCAGAGGCGCGCAAATCACATAGCTTC TGACTTGGAGATTGTGGATGAAGACCCATATGTTCCTCAATCTCTAAGGCTAGAGCCATCTTCTTTTGTTGGAGCCTTGA AGGTACAGGCCAGGGACATCTTCTATAGGTGGTATAGATGGGTCTTCTCCCACAACCTCCAAGACAGAAGTCGCATGATT TGTGCGCCTCTAAGAGGTATCTTTGGATCCGTAGATACGTCCAAGGACTTTATCCCTTCCATGAAGTTTAAAACAAGTTT TTTAGTGCGGCCAGACCTCTTATAGTAAGTGCACTATCGATCATCACGGTTAGGGTGTCTGAAAGAAGTGGATCATTTTC TGGGACCCTTTCTAGAGGCAAAGGCTGTACCATCAACTGGTTTGACGTCCATCATCACTATCCTCCAATTTTGTTCACCA CGAACTGAGTGAAACACCTCTGGGAGAGAAGGGAGTTTCTCTTTACCCAAAATTAGAACCAAATGGGATCTAATTCAGAG TTTAGTCCAGACTCCTGAGAGAAACTTAAAGATCCGTGCTTTCTCAATGTCGTGGAGCCTTCATCACACTTCACCCTCAA ACTGTGATACTGATCAATTCAATCCCGAGACCATTCAGGATGCAATTAATAGCCTGTTAGGGAGATAGTTCCCTACTTAG AATTGAAAACTCTATTTTCCAATTCATAACAGCCTGAGAGGTCTTGTTTCATAGAATATTTCTGCACCGAATTCTTCCAA ATATCCCTAGCAGTAGGGAAAAAAGCATATAATTTAGTCAGAGTGCAAAAACCAGATCATAATGAGAGAGTCCTCATCAA CCCAACGTGTCATTGTGGATCTGTCTTAGTAGGGGCTTTTGTTTTCAATGTGACTCATCTTGCGTCTAGAAGATATGACC CTTGCAATATTGGGAGATCATTGTGGGTCAAAGGTGGTAAGGAGGCGGTTTTCCCTTCTGGAGCGAGTTTCTCGTCTGTT TTGGGAACCTCCTTTTCAACCACAGTGAAGGACGAAAAAACAAAGCCTACAACAGAGAAACAAAGAGAAGAAAAAAAGGA AACTGAGGGGAAACTTGTCAGTTTCCCTAGTAAAGATATCATATAGATCTAGTTTTTTTCAAATTTTATTTCCTTGTATT TATTTTCTTAATTAGGTCTGTTATAGTCTGCATATTGTAATCACCAATTGTAATTTTTAATTAAGAAATAAAATTCAGAT TACTTTTTCTCTCTTTTCAAGTACTCAAAATACATTTATCTGTGAATCTGAGTATCTTCCATCTCAGGTGAGGGAGATTG AGCAGGAAGTATACAGTGAACCAGAAGCAGCCCAGAAAAAAGACGCAAAGAAGACTGCAGCAGTTGATCTGTCTAAAAGG TTAAAGGACTTGCGTTCCTTGAATGATGCTGCCGGTGTAAAAGGTGTTTCTCGTTTCCCTCTACGAACCTTTCTCAGTCA TAACTCTCCTGTTGCTACCCTGTTTTCTGAAAAGTATTGCTTAATAATTATTCCAATTCCAGCATATTTAGATTATCATT GTGATAGCATCACGACAAACTGTACTTAATAAGTTGAACAGCATTAGCCATTTTAAGTGAGGATCTTTCATACGTGCTGA TTTTAATGGTTATTTTTTGTGTTTAATGGATTGTTGGATTAACATTAATAAATTCCTTGTAGGTTTGAGCTTATTTATTT ATTTTTTAAAATTTAAATAAATGCTCAATTATATGGGCAGTTCCATCAAAGAGCTAATTTTTCTTCTTGTAATATCTTGG CTACACTATGTTTGGAGGCTAGGACCCTTCTCTTTAATATAAATCCTACAACAGATCTGCATATTCTTACAGAACAGTTT CTAAATGCAACTCTATTTCTTACTTGTATTCACCCCAAAACCTACCAAATCTCCTAAAGCTTCATTAAGAATGCCCTGCT TCCAGCACCATTGCAGCAAGTTGTGCTTTTAATGTCCAACTTATATGGCCCGATTTATTGTTCCTTATATAGGTTTCATG CCAGCTGTTTTCCTACTCAACCATTAGCCCTTAGCCAGCCTCACTCGAGTTGACAAGTATTTTCTACATACTAAATGCTT AATTGCATTTTCATTCTTTTTTACTATATTTAATTATTGATTTTGGTTCCCTAATACTCCTTTTTTGCACAAATTCGATA CGTCAAGTTTTGAATTGTTGCAACTAAGTCTATCCATCCTTTTCATTCTACTCGGAAGTCTCAAATTATTTTTCCACACC TAAAATTGATTAAATTATTTTAAACTTTCATCCGCTCTAAGGTCCTGTGTGTTCACTTATTTTGATCTTTTGTGTCTTTC ACTTATCTGATACCAAGATTAAACCTGGAGCTCTGAACTGCCATGATATTGTGTTCAAAGCTGACATGAACCAAGCTTAA ACTATTATTTTACAATATTCTATTTTGTTCCTTTCCTTTCGAAAGACTTTGTTTTTTTAACCAAATATACATGTAGCTGT TTTACAATACCTTGTGAGCACTGAGAATAGACTTTGTTTCTGTTGAATATAATTTTTTCTAGAATTTGCTGTACAATGTA TCTTTTGTTCCAATCGTAAGCACACATTTTGAAGCCTGAATACTTTGATTAAGATCCTCTCATTTCACTTGAAAATGTCA AGTGAAAAATTGTGTCTATCTCTTTCTTCATAAATATTTAGAGGGTTCCACTTGATTAATACATTTTAAGTGATGGTTGA AGATGACAAAGTCATATCCAGATGAAAGGATCCTGATCCATGAATCATGAAGTATTTTTGTGAAGAAGCATTCCTAGGTT TAAACCATATTATTAAAATTGTGTTGGCATTGGTTTTTATTTTCCTTTGATGTTTGTTGTTCCCAGCTTTGGAGGAATGG CGTAAAAGGAAGATGGAGAGGGCTAGACAAAGACAATTGGAGAAAAATGGAACGACCTCTTCACAAACTTGACTGGAAAT ACTCTCCAATATGTGATTAAGTGATGGTTGAAAATTGAAATGCTAAGTACTAGTCACTACTTACACTGTATAGCTGATTT TTGTAGTAACTTGTGCTGTAAAGACATCTTTCTTGCAAACAGAATTTGATTGTGATTGATACTATGTAGCTCATCTTTTA CTTTTATTTTATTTATTTTTTAGCAAATAGAAACAAATAATTTACCATCTGCCTTGATATTGTTTGATGATTTTAAGATG AGTCTTATAACGAGTGCTTCCAAGAAGTTACTCTGATACTGTTTCTTTATGCATTCAGGTAAGAATACACATATTAAGAA AGTCTTTAGCTGC
CDS sequence (LotjaGi6g1v0010400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTGCAACAATGGTGGAGGCTTAGATTCTCCTTCAGGAGTGCTACCATGGTGGTGTGCTTTCTCAACATAGTCAC TGCGATCTTCTTGCTTCATGGCTTTCTTGCTTCTTCCTACACTCGCAACAAACTGTCCACCGCAAACTCAAACTCAGCTC AGCTCAGTTACATCAAGGAATCTGAAGAGATTCGTCTTGCCATGTTACCATTGGAGCTGATTAAAAGAGTGAGGGAGATT GAGCAGGAAGTATACAGTGAACCAGAAGCAGCCCAGAAAAAAGACGCAAAGAAGACTGCAGCAGTTGATCTGTCTAAAAG GTTAAAGGACTTGCGTTCCTTGAATGATGCTGCCGGTGTAAAAGCTTTGGAGGAATGGCGTAAAAGGAAGATGGAGAGGG CTAGACAAAGACAATTGGAGAAAAATGGAACGACCTCTTCACAAACTTGA
Protein sequence (LotjaGi6g1v0010400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVQQWWRLRFSFRSATMVVCFLNIVTAIFLLHGFLASSYTRNKLSTANSNSAQLSYIKESEEIRLAMLPLELIKRVREI EQEVYSEPEAAQKKDAKKTAAVDLSKRLKDLRSLNDAAGVKALEEWRKRKMERARQRQLEKNGTTSSQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 148 | 148 | 8.3E-71 | – | |
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 148 | 148 | 8.3E-71 | – | |
| TMHMM | 15 | 37 | 23 | - | – | |
| Phobius | 16 | 36 | 21 | - | – | |
| Phobius | 37 | 149 | 113 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0010400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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