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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0010800 |
| Transcript ID | LotjaGi6g1v0010800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; TAIR: AT2G05320.1 beta-1,2-N-acetylglucosaminyltransferase II; Swiss-Prot: sp|Q10469|MGAT2_HUMAN Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase; TrEMBL-Plants: tr|I3S6T3|I3S6T3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0010800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1984942..1987345) extracted from Lotus japonicus Gifu genome v1.2.
CAATCATGACGCATTAAATTGTCATTTTCGCTTGACTGACTTCCTTTGCTTCTAGTCGGATCCCATTTCCATTCCCATTC CCATTCCCATTTGCATACATAGCCAGCCACCACACTGGACCCGACCACAACAACAACACACAAATCTTTGGTTTGTCCAT CGCCTCACGCCTGCAGTTCAAATCTCTCTCTCTCACTCTGTCGTGTTTTCTAAGTTTGATCCTCTTCTGCATCCCAATTT GGCACCCCAAATCCATGCCCTCTTTCTGCTCCCACAACCCTGTTGTTTATGCGTCTGATTTAACTTCCATGTGCAAGGGG AAGTGCAAAGTTTGATTCTTTAGCTCTAACTGAAAGTGGGTTTTGGTTGACTGCTTCAACCTCAGCCTCAAGATTCAACA CCATCAATCATAGGTTTTTAATGCTTTGTAACCTGCTATTTCAGATTTTGAATATTAGTTAGTTCATGTTTTGTTATCAA TTAGTGATGTGGTTGACATGTTTGATGTAATGTCTATGTGAATTTAGAATCTTTTTTATGCTTTGTCTATCATCACTGTA AGGCTTAGTTCTATTATGGCTGTTGCTTCTAAGAAACCCCGCCTTAGAGAGGCGGCTTTGCGCCATTTGTTAGTTGTGGT GTTTGTTACTCTATCTGGGGTTTTACTACTGATATTTCTGCTTGGATCAAATTCAGCACCAACCATTGGGGTGAAGGGTT TAGAAAATGTTGTTGATGATGATGGTTCTGGATATCACCGTGACTTGAAGTTTACAGAGGGGCGCGGCCTCCCCCGACAG AGTCAATTGTCACTTAAATTGGAAAAGCTAAATGAGTTGCCTCCAAGAAACTTGGATTTGTATCCAACTCTTGCCAAGGA TCCTATCATTGTTGTTCTGTATGTTCACAACCGGCCTCAGTATCTTAGAGTAGTCGTTGAGAGCCTTTCGCGGGTGGTAG GGATTGATGAAACCTTGTTAATTGTTAGTCATGATGGTTACTTTGAGGATATGAACAAGATCATTGAGGGTATCAGATTT TGCCAAGTTAAACAGATATATGCTCCCTATTCGCCCCATCTGTTTTCGAATAGCTTTCCTGGGGTCTCAGCTGGTGACTG CAAGGACAAGGATGATGCAAGAGAAAAACATTGTGAGGGGAATCCTGATCAATATGGAAACCACCGCGCACCGAAGATTG TATCATTGAAGCATCATTGGTGGTGGATGATGAACACCATATGGGATGGATTAAAAGAGACAAGAGAGCATTCTGGTCAT ATTCTTTTCATTGAAGAAGACCACTTCATATTTCCAAACGCATATCGCAATCTACAGATTCTAACTTCATTGAAGCCTAA AAAATGTCCTGATTGTTATGCTGCAAATTTAGCTCCTTCTGATGTGAACTCTAGAGGGGAAGAGTGGGAAAGTTTAGTTG CTGAGAGAATGGGGAATGTGGGTTACTCTTTCAATCGTACTGTGTGGAGGAAAATTCACAATAAGGCTAGAGAGTTTTGT TTCTTTGATGACTACAATTGGGATATCACAATGTGGGCAACTGTGTATCCTTCATTTGGAAGTCCAGTTTACACATTACG AGGTCCTAGGACCAGTGCTGTGCACTTTGGTAAATGTGGTTTGCATCAGGGTCAGGGGGAGAATAACGCTTGCATTGATA ACGGCTTGGTGAACATTAATGTAGAAAATCATGACAAGGTTTCTAACATTGAATCAGATTGGGAAGTTCACACATTCAAA AATCAGCCTGGTTACAAAGCTGGGTTTAAAGGTTGGGGTGGCTGGGGGGATAACAGAGACCGCAACTTATGCTTGAGCTT TGCCAAGTTGTATCCCTCCAGAATCACTGCATCTCCTTTGTAAGAGTTTTGTTTACCACTTCTTGTTTCTTCCTCTCTAT TTTTATATGGTCTATTATAATCACAAGATGAGAAAATTAGTTTCTTCAATACAGGCCTTTACACATGTTATTAGGGTTCA TAGTTACTTTGACAGCTATCACTGAATCTCATGTACCAGTTGTAACATTGAATGGATATTCGTTCATAATTAGTAATGTG TACATGCATAATGCTTAGGTGTGATGTTATGGGCCATTGAAAGTTGAAACCCTTACTTTTCTATATTCATGTTTTCCCAA TCCCATGTACCAGTCTCTGCATGGAAGACATTTATTTGTTTTGCTAATGGAGAGTAACTTTCTTCTATGCTTCTTTGTAT CCTCCTGTCTGTGTGAGTTTGCAGTAAGCTTAAGGATTGGGCCAAAATATTAGACTCTACTTATTTTTAACCAAATTATA TAGAGTTATCACAGTTTAATTATGAATGCAATTAAATGACATATGGATTGAATCATTGATATAGTTGATTGACTACATGC TATC
CDS sequence (LotjaGi6g1v0010800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTTGCTTCTAAGAAACCCCGCCTTAGAGAGGCGGCTTTGCGCCATTTGTTAGTTGTGGTGTTTGTTACTCTATC TGGGGTTTTACTACTGATATTTCTGCTTGGATCAAATTCAGCACCAACCATTGGGGTGAAGGGTTTAGAAAATGTTGTTG ATGATGATGGTTCTGGATATCACCGTGACTTGAAGTTTACAGAGGGGCGCGGCCTCCCCCGACAGAGTCAATTGTCACTT AAATTGGAAAAGCTAAATGAGTTGCCTCCAAGAAACTTGGATTTGTATCCAACTCTTGCCAAGGATCCTATCATTGTTGT TCTGTATGTTCACAACCGGCCTCAGTATCTTAGAGTAGTCGTTGAGAGCCTTTCGCGGGTGGTAGGGATTGATGAAACCT TGTTAATTGTTAGTCATGATGGTTACTTTGAGGATATGAACAAGATCATTGAGGGTATCAGATTTTGCCAAGTTAAACAG ATATATGCTCCCTATTCGCCCCATCTGTTTTCGAATAGCTTTCCTGGGGTCTCAGCTGGTGACTGCAAGGACAAGGATGA TGCAAGAGAAAAACATTGTGAGGGGAATCCTGATCAATATGGAAACCACCGCGCACCGAAGATTGTATCATTGAAGCATC ATTGGTGGTGGATGATGAACACCATATGGGATGGATTAAAAGAGACAAGAGAGCATTCTGGTCATATTCTTTTCATTGAA GAAGACCACTTCATATTTCCAAACGCATATCGCAATCTACAGATTCTAACTTCATTGAAGCCTAAAAAATGTCCTGATTG TTATGCTGCAAATTTAGCTCCTTCTGATGTGAACTCTAGAGGGGAAGAGTGGGAAAGTTTAGTTGCTGAGAGAATGGGGA ATGTGGGTTACTCTTTCAATCGTACTGTGTGGAGGAAAATTCACAATAAGGCTAGAGAGTTTTGTTTCTTTGATGACTAC AATTGGGATATCACAATGTGGGCAACTGTGTATCCTTCATTTGGAAGTCCAGTTTACACATTACGAGGTCCTAGGACCAG TGCTGTGCACTTTGGTAAATGTGGTTTGCATCAGGGTCAGGGGGAGAATAACGCTTGCATTGATAACGGCTTGGTGAACA TTAATGTAGAAAATCATGACAAGGTTTCTAACATTGAATCAGATTGGGAAGTTCACACATTCAAAAATCAGCCTGGTTAC AAAGCTGGGTTTAAAGGTTGGGGTGGCTGGGGGGATAACAGAGACCGCAACTTATGCTTGAGCTTTGCCAAGTTGTATCC CTCCAGAATCACTGCATCTCCTTTGTAA
Protein sequence (LotjaGi6g1v0010800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVASKKPRLREAALRHLLVVVFVTLSGVLLLIFLLGSNSAPTIGVKGLENVVDDDGSGYHRDLKFTEGRGLPRQSQLSL KLEKLNELPPRNLDLYPTLAKDPIIVVLYVHNRPQYLRVVVESLSRVVGIDETLLIVSHDGYFEDMNKIIEGIRFCQVKQ IYAPYSPHLFSNSFPGVSAGDCKDKDDAREKHCEGNPDQYGNHRAPKIVSLKHHWWWMMNTIWDGLKETREHSGHILFIE EDHFIFPNAYRNLQILTSLKPKKCPDCYAANLAPSDVNSRGEEWESLVAERMGNVGYSFNRTVWRKIHNKAREFCFFDDY NWDITMWATVYPSFGSPVYTLRGPRTSAVHFGKCGLHQGQGENNACIDNGLVNINVENHDKVSNIESDWEVHTFKNQPGY KAGFKGWGGWGDNRDRNLCLSFAKLYPSRITASPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 40 | 40 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 13 | 426 | 414 | 1.5E-177 | – | |
| PANTHER | 13 | 426 | 414 | 1.5E-177 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 18 | 36 | 19 | - | – | |
| Phobius | 37 | 40 | 4 | - | – | |
| Phobius | 41 | 435 | 395 | - | – | |
| Pfam | 91 | 419 | 329 | 2.8E-104 | ||
| SUPERFAMILY | 102 | 423 | 322 | 3.83E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Golgi stack | The set of thin, flattened membrane-bounded compartments, called cisternae, that form the central portion of the Golgi complex. The stack usually comprises cis, medial, and trans cisternae; the cis- and trans-Golgi networks are not considered part of the stack. | ||
| Molecular function | Alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity | Catalysis of the reaction: UDP-N-acetyl-D-glucosamine + alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R = UDP + N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,6-(N-acetyl-beta-D-glucosaminyl-1,2-alpha-D-mannosyl-1,3)-beta-D-mannosyl-R. | ||
| Biological process | Oligosaccharide biosynthetic process | The chemical reactions and pathways resulting in the formation of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi6g1v0010800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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