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LotjaGi6g1v0013200.1

Overview

Field Value
Gene ID LotjaGi6g1v0013200
Transcript ID LotjaGi6g1v0013200.1
Lotus japonicus genome version Gifu v1.2
Description GATA transcription factor, putative; TAIR: AT3G24050.1 GATA transcription factor 1; Swiss-Prot: sp|Q8LAU9|GATA1_ARATH GATA transcription factor 1; TrEMBL-Plants: tr|I1LAK4|I1LAK4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0013200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:2455391..2459882) extracted from Lotus japonicus Gifu genome v1.2.

AATGGGCCTTCCCTAATCCCCTACACGTGCCTCACCATCTCTCGTTCTCTCAGTCCCTCCTCTCTCAACGCTCTTTCTGG GGTTTCTTCTTCTCCTAGCTGCTGCTGCTGCTGCTGCTCACTCCAGTCTCAACCAGCACCCAGCAGGTATTGTTTTGATT CTTACCCATGTTTTCATTTCCCTTAATCTCTGTTCTCATTCCCTTGTTGCTTTGGTTTTTGCTATCTGTATTTCTTCTAA CTTTCCTGGGTTAGCTGAATATGCTGTGAATTTGGTTTTTGTTATCCATTTAGAGAAATGGGTATGCATGGTTGGTTAGA AATTTGAATTTTTTGGAATTTGAATTTTTTCTTGCTTGTTTCAGCTTCAGGATTGCCTCTGCTACTCTGTACCTTGTTCC TTGCTTATTTGTTTTTCTTAATTCATAATTCCAGTTTCAATTTTGCTTTCCATTTGTCCAATGCTGTGTAAAATTTATTG AATGGAAATGTGGATTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGGACATGAAGTATGAACTCTTGAA TTGTTCTGGTTTTTGTTCTTTATTTTTTTGATTGAAGTTCTTTAATAGTTTCTGACGAACCTCCGTAGCCGCAAAACATA TTAAAACCCACTGGTTTTGACTGTGAAAGTAAATATGACTTAATATCAATTTAACCTATGTAAATATGTGATAGCCATGC TTGTTTTGAATAACGATGACAACAAAGAATCCCTACCCTAGTACATATCTGTTAGAGCGACTTTGAATGATTGTGTTTTA GACCAAATAGAAGCCAATAGCTTAATTTTATTCAAAATCAGCTGAAAGCTAGCCGATTTTCCTTTAAAATGCGCACCAAA TGCACTAAATAGTAGAACAGCTTGTACATTTTCATAAAAATAGCCTGTTATACTAAAACCATTAAAACTAGCCAGAAAAG ATTGGTCCAGGGATCAGGAACCTACAATTCACCTAAAAAGTCATATGATGTCCATATTCCATTGGGAGAGAGCAACAAAA CAATGTCAGAATAGATAAGGAACTAATCCGGCATTAGCACCACACGAACCACCCATTGCCTTGTGTGGCCTCCAAACCTG CAACATGTCATAAGTATTAATTCTGCTGAACACCACAGTCCAAATGAAAAGACTTGGCCTTAGAGGGATACCTGGACTTC TAGAGGAGTTTACTATTAGAATAATTTAAATATATTCTGAAACAATCTGTTCAGTTTTTAGCTATATCTGTTTCTCCAGC AATTTACAAAAATAACAAGCTTGACTATAAATGTATTGTTATACTGTGAGATCTTCAGGAACCTAATTTTTTTTTGTCTA AACCATTAAAGTGAACCGCCAAAAATTGCTTCAAAGTAGGGGGACACCTCAATGCACGCCAAAAATCCTAAAAGGATAGC TCCATGAACAAGCATGTGTCTAATGATCCTTTCCTTTTATAATGCTGCTAAACTTGAATTCATCATGAATATCCATATTT TGTAATTTTGGTTAAGTCTATTCAATGCAATGTTTCCTCTTGTTGGCCTATATCTCAGTCTCATCCAGTATGTGCTGATA TGACATCTGAATCTTCTAGAGTTCAACTCTTCAATTTTGTAATTTAGAGAGTCATATGTTTATAATTTCTTACACCATGT ACTTTTATAGCATAAAGGCAGCCTGTATGTACCTTAACTTGCATTTGCAAGAGGTTGATTCAATGACTCAAATTTGTGAC CTCCTAGTCACATGGTTGCAACTTCAATCGTTGCGCTTAGGCTCCCCTTCATGGCATGATCTTCACTATTTTACATTTTC CGTTTGCACATCTATAGCCATTCCTTTATCTATTAATCCTACTTTTAAGCTTCAAAATTTCTTTCTTTTCAGGGATGGTA ATGGGGGCTCTTGGTTCTGTGGATGACCTCTTGAATTTCTCATCAGACATTGGTGAGGAAGATGATGATGACGAGAAACC TAACAAAGCCTTTCCTTCACTTAACCCAATATGCAGTGATCCACCATCATTTAACCCATCGGACCTGAACGGTCGTAGTC ATTCAGTTCCTGTAAGTTTGACGGTCCATTTTAACCTTTGTCAAATATTTACAAGACCTTGATAAAAATGAGTATGTTGG TTTTTTATTGACTTATGGCTTGTTTTGAGCTTCTGTATTTATGAAAAGAGAAATGGTACATAAAGCTTTAGTGAATTATG GTTTGGTTGGAATCAGCTGGAATTGATATTTAGACTCGGCTGTCTTGGGTGAGGGAACTTCAGAAGGAATTAAGAGGAAT AAGATTGTGGATTATCTTCTAGTGGGAACAGAAAGTTTTTATTTGTTTCTCGACTTGTTTTATAATTTATAAAACTGCAG CTTCAGGACAAGTTTGTCCTTGAGGACTCTTATTGGGGTGGTCCGTGGTCATATATTAGTCTTACTTATCTGAATTGCTT AAGGGTGTCTCTGAGATGGTAAAAAAAGTGCTAGTATGACTTCATTTTTTCTTTGTACATGTTAAAGTTTTTTTGTTGGT TGTGGGAGGGGGGGGGGGGTGTCCTATTGTGGCACACTATTATGTATTTCTTGTGAAAAGAAATCTAACAGGTGATAAAA AATTCTTACGTTCTTTTAGCATCATTGTAATGCAAATCCTAGATTGTTAAATGAACAATATATTCTGTCTTGTCATCATA TACTTTTCATTTACATGTGTTGATCACTTTATTTCCTAGTTTTCCATGCTGTAGAACCATATGTTTCTCAGTTCAGAAGG AAACAGGGTGGACACTGGTCTCTTGATCCAAAGTTCACAGCATCTATGATTAATTGCATGAGTCCAACGCCTGAGACTGT GTTTGAATGAGGATTGCTTTCAGTTAAACGCCATCGGAGGTCAAAACCTCCTTTCATGTTTTTTACCTGGGAACGTGGAA TCCCACTTTCCAAAGCATGCAAACGGAATTTTTAATTTTGAAACAACCATACTCTGAATTGACTTGGAAAACCTTTTCAC ATTACTAACGGTTGAAGATTGACATGTCCCAGTTTTCATTTTCCAGGCATATGCAGAAGAGGAGCTCGAATGGTTATCTA ACAAAGATGCATTTCCTGCCATTGAAACATTTGTCGAGTTATCTTCTATTCATCCAGATCTAGCAAAGCACCAAAAGGCT GCCCCAAAGATTGACTATAGCACAAGCAGTAGCAACAGTAATAACAGCAGTAACAGCATTACCCTCTTAAGTGGCTACGA TCACCTGAAAGTCCCTGTCCGTGCACGGAGCAGGCGTCGCAGTAGGCGTCGCCCTATCATTGCTGACAACTCTGGCCAGC AATTCTGGTGGCAACAACTGAGCAATGAAATTTGCAAAGAAGAAGCGATAAAAATCTCAACCATTGGGAGGAAATGTCTT CACTGTGGAGCTGAAAAAACTCCACAATGGCGTGCAGGTCCCCATGGTCCAAAAACACTTTGTAATGCATGTGGTGTTAG ATTTAAGTCTGGCAGACTTGTGCCTGAATACCGTCCGGCAAGTAGCCCAACTTTTCGCACTGAATTACATTCCAATTCCC ACAGGAAGGTAATGGAGATGAGGAAGCAAAAGCATATGGGAATGGGTTGAAGGCCTTGGATTAATGCCCAGTAGTGAGTG GTTCTTTAGCATTTAACGTGATAGAACTTAGGGCTTTGATTTTCTTTTCCATTTAGATTTATTCTATTAAATTTTTCATC CATTTTTGCTGTGGGATGAGTTTAGATGGGCAGTGAATATTCTTGATAGCATTGAAGTTAGGGAGGTCTTGAATCATTTG TCTTTTTATGATGAAAACAAGAAGCAAATTTGGGATTTTCTTGATTTGGCTTTTTAATGCTTGTATCATGTACTTTCATT GGGGATCAGGGAGAAGGTGAGTTGCTGGAGTAACGATTGTGGTCCCTTTACCGGAGAGAAGCTCTTATGTTTATCTGAAC TAATTCTAAACTAATGGACAGTGCTGTTGCTGATTCTAGAGGAATTAAGATACCATCCATGTATTTGAATAAAGAAAAAA AAATGCTGTCTTAGATGCAAAGACAGGTTAGTTCTTTAATTTTTGATCCTCCGTCGGAGGGTCTAGATGTTGGAGTAAAA ATTGAATTGATCAATCCTTGACTCATTGGCGGCAACGCAAAATCTCTGTATTCATTGACTCATTGTCTTACTTCTTGACA AATGCAGTTTGAGAAACAGAAAACATTTTGTTTCCTTTCTGCTTACAACTTTGGTTGCTGCTTTATGATTGTTCTTGTCC ATTGTGTTTAGGTTAGATGCTGCAATGCAGATTTATATTCTCCTTCCAAACTTATGTAAGATCATCCCAATGAGATCATT AGTATTAGTCACCCATAATTGAATCAGCAAAGGGAAGTATCTTAGGATAGATAGAAATTACAATCAATTTAATTCTAAAA AGATGAAAAAAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0013200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTAATGGGGGCTCTTGGTTCTGTGGATGACCTCTTGAATTTCTCATCAGACATTGGTGAGGAAGATGATGATGACGA GAAACCTAACAAAGCCTTTCCTTCACTTAACCCAATATGCAGTGATCCACCATCATTTAACCCATCGGACCTGAACGGTC GTAGTCATTCAGTTCCTGCATATGCAGAAGAGGAGCTCGAATGGTTATCTAACAAAGATGCATTTCCTGCCATTGAAACA TTTGTCGAGTTATCTTCTATTCATCCAGATCTAGCAAAGCACCAAAAGGCTGCCCCAAAGATTGACTATAGCACAAGCAG TAGCAACAGTAATAACAGCAGTAACAGCATTACCCTCTTAAGTGGCTACGATCACCTGAAAGTCCCTGTCCGTGCACGGA GCAGGCGTCGCAGTAGGCGTCGCCCTATCATTGCTGACAACTCTGGCCAGCAATTCTGGTGGCAACAACTGAGCAATGAA ATTTGCAAAGAAGAAGCGATAAAAATCTCAACCATTGGGAGGAAATGTCTTCACTGTGGAGCTGAAAAAACTCCACAATG GCGTGCAGGTCCCCATGGTCCAAAAACACTTTGTAATGCATGTGGTGTTAGATTTAAGTCTGGCAGACTTGTGCCTGAAT ACCGTCCGGCAAGTAGCCCAACTTTTCGCACTGAATTACATTCCAATTCCCACAGGAAGGTAATGGAGATGAGGAAGCAA AAGCATATGGGAATGGGTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0013200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVMGALGSVDDLLNFSSDIGEEDDDDEKPNKAFPSLNPICSDPPSFNPSDLNGRSHSVPAYAEEELEWLSNKDAFPAIET FVELSSIHPDLAKHQKAAPKIDYSTSSSNSNNSSNSITLLSGYDHLKVPVRARSRRRSRRRPIIADNSGQQFWWQQLSNE ICKEEAIKISTIGRKCLHCGAEKTPQWRAGPHGPKTLCNACGVRFKSGRLVPEYRPASSPTFRTELHSNSHRKVMEMRKQ KHMGMG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45658:SF42
8 243 236 5.2E-86 –
PANTHER
PTHR45658
8 243 236 5.2E-86 –
MobiDBLite
mobidb-lite
15 55 41 - –
MobiDBLite
mobidb-lite
40 54 15 - –
SMART
SM00401
170 220 51 3.7E-16
IPR000679
ProSiteProfiles
PS50114
170 206 37 12.387
IPR000679
Gene3D
G3DSA:3.30.50.10
170 223 54 2.5E-14
IPR013088
SUPERFAMILY
SSF57716
172 234 63 4.75E-15 –
CDD
cd00202
175 223 49 1.66195E-14
IPR000679
ProSitePatterns
PS00344
176 201 26 -
IPR000679
Pfam
PF00320
176 209 34 2.4E-16
IPR000679

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0013200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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