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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0014600 |
| Transcript ID | LotjaGi6g1v0014600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ankyrin repeat-containing protein; TAIR: AT1G04780.1 Ankyrin repeat family protein; Swiss-Prot: sp|Q80UP5|AN13A_MOUSE Ankyrin repeat domain-containing protein 13A; TrEMBL-Plants: tr|A0A1J7IP22|A0A1J7IP22_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0014600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:2634585..2637550) extracted from Lotus japonicus Gifu genome v1.2.
TTTCACTCTATGAAAATTCCTCTCTTCACATTTTTCACCTTTATAGCTTTTCTGTTCCCATTTACAGAATTATGCTTGGT TTGACCCTTCTCTATTTTTCTTCCAATGATTGATTCAGATACATTGATTCTACTATTTGGTTATGATTGAAAATTGGATT GATTTCATGGGATTTTTCCTATTTTAAAAGGAAATTGTCAATGGAACTGTGTCTTTCATTGAGTTCCTCCTGAATCTAGT TTTAGATTATTGAATCAAATGATTGTTCTTGATAGATTGATTCTGCTACTTTGTTGTGATTGAAACTGTTGATTTTATTG ATGGTTGTCATGAGGTTGTTCCTTTTTTAAAAGCCATTACCATTAGTCATCCTTGAGTTACTCCTAATTCTAGTTATGGC GCATTTACGGTGGTTTATTGGATTTATTGGCTGCAGTGGTCGTAGATGCAGCAGAGAATCTAAATTTGATTGAATCAATG TGTGGTTGTGATTATTGATTACTGTGGGTTGGTACCTTTAACCCTTTGAGGTATGGCAGGCATTAATAATATCTCAGCAT ATGCTCATAGCCCTGTCCACAAGGCCATAATATTGAAGGATCATGCTAAACTTAAGGAGATAGTTGCAGTTCTCCCCAAA CTTAGTAGTCCTTATGAGATCAAAACTGAGGCTGCCTCAATTGCTGAGGATGAGAAGGCGTCTGCAATTTCTGCTGTAGT AAATAGGAGGGATGTGCCAAATGGTGACACTCCTCTTCACTTAGCTGCAAAAATTGGCGATCCGGTAGCTGCGGAAATGC TCATGGATGCCGGGGCAAATAGTAGCTTGAAGAACAAGGAAGGATGGAGTGCTCTTAGAGAAGCTATCATTAACAAACAA GATAAAGTTGCAATGGTTATGATCAAGTATTCTTGGAATGATGTGAATGAGAAATGGCATAGGAGATTGCCGCGTTATAT TGCAACCATGAGAAGGATGAGGGACTTCTACATGGAGATCACGTTCCATTTTGAGAGTTCTGTGATACCTTTCATCTCAA GGGTTGCACCTTCAGACACTTACAAGATTTGGAAAAGGGGTGGGAACATGAGGGCAGACATGACTCTGGCTGGTTTTGAT GGTTTGAAAATCAAGAGGTCTGATCAGAGTCTTTTTTTCCTTGGAGATGGGTTAGATGATGAAAGGGAAATCAAACTCCC AGGATTATTGTGCCAGGTCTCACACAAGAAGAAGGAAGTGAAAGTTTCTCATTTATATGCTGAACCTACAAAACCAAATG ATAGGCAAGTTAAGCAAAGGTTGGAGAGGAAGTGCAAGGAGAAAACAGTGAGGGTTGGGATTGATGTGAGTCAAGCAGTT CTTGTTCCCCAAATGACATGGAGGAGGAAGGAGAAGAAAGAAATAGTGGGGCCATGGAAATCTAAGGTGTATGAAATGCA AAATGTGGTTCTGAGTGTGAAATCCAAAAGGCCTCCTGGAGCTCCTCCTCCAACTGAGGCTAAGTTAACTCAAAAAGAAG AAATCAAGAAGAAGGAAGATGAAAAGATTGATGACATTTTGACAGCAGAAGAAAGAAAGCAATTTGAAGCAGCATGGAAT TCATCAGAAGAAAATGATCTTCATCACAAAGATAATAATGTAATGAAAGAAAAGAAAGTAAGGTCTAGTAGACATAATAG AGAAAAGGAGCACCACCACAAGGGGAAAAGCACCACCAATGCAATGAGTTCTGCTAGCAGCAGTACTAGCCAGAAGGATG AAAATGGTGAAAGTGAGTATAAGAGAGGGATGATGCCTGTTCTTTGGCTTTCTCCAAGCTTTCCACTGAAAATTGAAGAA TTGTTACCGTTGCTTGACATTATTGCAGAAAAAGTTAAAGCGGTTCGTCGTTTAAGAGAACTCCTTACAACTAAACTTCC AAAGGAAACCTTTCCTGTCAAGGTGTGTGCTCTTCATTATTTTTCTTTGATTTGAGCATTTTACAGGACATGTTAGTTCT TAATTTTTTTTTCCTTTAACACATTGGAATCTCCAAATTCTAAGTGTTCCATCTTTGTTTTTACTTGAATCATCCATGAA TGAAGAAAAAAAGCCTTTGTGTCTGTTTTTTGCTTGCATGATGTTGATTATGGTACATAATTTGCTTTTGCATACTCATA AGCTTCACTATACTATTTTGCTGCACATATTTGATTCAGGCTTACTGTGAGCAGGGCTCATCCACATACATATATTGCAC GTTTTACTTTTATTATTGAAATGAATTTGCTTTTAGTCATGTTGGTTAATACTTAATAGGATTAAAAGGGTAAAAATGAT TTACTTTCTATTTATTTTTGTTTCTTTATCGAGATTATCTTTAGTATTTTCCCCTTTTCAATGGGATATGATTATAAAGC CATTTATTTCACTGCCTTGAAAATTTAGGTTGCAATCCCTGTGGTCTCCACAGTTAGAGTATTGGTGACATTTACAAAGT TTGAAGAAATGCAGCAAGCAGATCAGTTTGAATCAGCCCCATCAAGTCCTACTGGTGGTTCCCAAGAGGATCCAGAAGTG GAACAATCCTCCTCCTCCTCATCATCATCATCATGGTTCCAGTGGATAAAGGCATCTTCCCCTCAATCCAGTTCCTCTGA TGCTGAATCCAGTAGTAAAATAGATGATAGACAAGACCCTTTTACCATTCCCTCAGATTATAAATGGTATTCTATGGATC AAAAAAGTTGAAATTTTAGCAAGCTTCATTCCCCAACTTACTTCTAACACAACCAAACCATTCACCACTTTAGTCATTGA ACCACTGGCCTTGTACTTATATCACATAATTCATAGCTTTTTATGTATTTGTTTACTTATTTAGTTATTTTCATGAAATA GAATGAGGATGGTTGGCAATAATCAGAAAGTAAGTTGATCCTCCTTTCATGGCCTAGCAATCGCATTTTACTACCGCAGA CTCAGC
CDS sequence (LotjaGi6g1v0014600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGGCATTAATAATATCTCAGCATATGCTCATAGCCCTGTCCACAAGGCCATAATATTGAAGGATCATGCTAAACT TAAGGAGATAGTTGCAGTTCTCCCCAAACTTAGTAGTCCTTATGAGATCAAAACTGAGGCTGCCTCAATTGCTGAGGATG AGAAGGCGTCTGCAATTTCTGCTGTAGTAAATAGGAGGGATGTGCCAAATGGTGACACTCCTCTTCACTTAGCTGCAAAA ATTGGCGATCCGGTAGCTGCGGAAATGCTCATGGATGCCGGGGCAAATAGTAGCTTGAAGAACAAGGAAGGATGGAGTGC TCTTAGAGAAGCTATCATTAACAAACAAGATAAAGTTGCAATGGTTATGATCAAGTATTCTTGGAATGATGTGAATGAGA AATGGCATAGGAGATTGCCGCGTTATATTGCAACCATGAGAAGGATGAGGGACTTCTACATGGAGATCACGTTCCATTTT GAGAGTTCTGTGATACCTTTCATCTCAAGGGTTGCACCTTCAGACACTTACAAGATTTGGAAAAGGGGTGGGAACATGAG GGCAGACATGACTCTGGCTGGTTTTGATGGTTTGAAAATCAAGAGGTCTGATCAGAGTCTTTTTTTCCTTGGAGATGGGT TAGATGATGAAAGGGAAATCAAACTCCCAGGATTATTGTGCCAGGTCTCACACAAGAAGAAGGAAGTGAAAGTTTCTCAT TTATATGCTGAACCTACAAAACCAAATGATAGGCAAGTTAAGCAAAGGTTGGAGAGGAAGTGCAAGGAGAAAACAGTGAG GGTTGGGATTGATGTGAGTCAAGCAGTTCTTGTTCCCCAAATGACATGGAGGAGGAAGGAGAAGAAAGAAATAGTGGGGC CATGGAAATCTAAGGTGTATGAAATGCAAAATGTGGTTCTGAGTGTGAAATCCAAAAGGCCTCCTGGAGCTCCTCCTCCA ACTGAGGCTAAGTTAACTCAAAAAGAAGAAATCAAGAAGAAGGAAGATGAAAAGATTGATGACATTTTGACAGCAGAAGA AAGAAAGCAATTTGAAGCAGCATGGAATTCATCAGAAGAAAATGATCTTCATCACAAAGATAATAATGTAATGAAAGAAA AGAAAGTAAGGTCTAGTAGACATAATAGAGAAAAGGAGCACCACCACAAGGGGAAAAGCACCACCAATGCAATGAGTTCT GCTAGCAGCAGTACTAGCCAGAAGGATGAAAATGGTGAAAGTGAGTATAAGAGAGGGATGATGCCTGTTCTTTGGCTTTC TCCAAGCTTTCCACTGAAAATTGAAGAATTGTTACCGTTGCTTGACATTATTGCAGAAAAAGTTAAAGCGGTTCGTCGTT TAAGAGAACTCCTTACAACTAAACTTCCAAAGGAAACCTTTCCTGTCAAGGTTGCAATCCCTGTGGTCTCCACAGTTAGA GTATTGGTGACATTTACAAAGTTTGAAGAAATGCAGCAAGCAGATCAGTTTGAATCAGCCCCATCAAGTCCTACTGGTGG TTCCCAAGAGGATCCAGAAGTGGAACAATCCTCCTCCTCCTCATCATCATCATCATGGTTCCAGTGGATAAAGGCATCTT CCCCTCAATCCAGTTCCTCTGATGCTGAATCCAGTAGTAAAATAGATGATAGACAAGACCCTTTTACCATTCCCTCAGAT TATAAATGGTATTCTATGGATCAAAAAAGTTGA
Protein sequence (LotjaGi6g1v0014600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGINNISAYAHSPVHKAIILKDHAKLKEIVAVLPKLSSPYEIKTEAASIAEDEKASAISAVVNRRDVPNGDTPLHLAAK IGDPVAAEMLMDAGANSSLKNKEGWSALREAIINKQDKVAMVMIKYSWNDVNEKWHRRLPRYIATMRRMRDFYMEITFHF ESSVIPFISRVAPSDTYKIWKRGGNMRADMTLAGFDGLKIKRSDQSLFFLGDGLDDEREIKLPGLLCQVSHKKKEVKVSH LYAEPTKPNDRQVKQRLERKCKEKTVRVGIDVSQAVLVPQMTWRRKEKKEIVGPWKSKVYEMQNVVLSVKSKRPPGAPPP TEAKLTQKEEIKKKEDEKIDDILTAEERKQFEAAWNSSEENDLHHKDNNVMKEKKVRSSRHNREKEHHHKGKSTTNAMSS ASSSTSQKDENGESEYKRGMMPVLWLSPSFPLKIEELLPLLDIIAEKVKAVRRLRELLTTKLPKETFPVKVAIPVVSTVR VLVTFTKFEEMQQADQFESAPSSPTGGSQEDPEVEQSSSSSSSSSWFQWIKASSPQSSSSDAESSSKIDDRQDPFTIPSD YKWYSMDQKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 568 | 568 | 2.7E-284 | ||
| PANTHER | 1 | 568 | 568 | 2.7E-284 | – | |
| Gene3D | 2 | 150 | 149 | 1.4E-12 | ||
| SUPERFAMILY | 63 | 127 | 65 | 5.44E-12 | ||
| ProSiteProfiles | 70 | 125 | 56 | 16.016 | ||
| SMART | 70 | 99 | 30 | 8.4E-4 | ||
| ProSiteProfiles | 70 | 102 | 33 | 13.304 | ||
| SMART | 103 | 133 | 31 | 190.0 | ||
| Pfam | 187 | 562 | 376 | 4.0E-86 | ||
| MobiDBLite | 310 | 338 | 29 | - | – | |
| MobiDBLite | 353 | 415 | 63 | - | – | |
| MobiDBLite | 353 | 380 | 28 | - | – | |
| MobiDBLite | 394 | 409 | 16 | - | – | |
| MobiDBLite | 493 | 570 | 78 | - | – | |
| MobiDBLite | 493 | 543 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0014600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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