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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0017300 |
| Transcript ID | LotjaGi6g1v0017300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein root primordium defective 1; TAIR: AT4G01037.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A0L9VUC5|A0A0L9VUC5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0017300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3066313..3073248) extracted from Lotus japonicus Gifu genome v1.2.
GGGTTTGTTAAGCTAAGTTCTTGCAGATCAATTATTAGAATTTTACAAAAAATATTTTATTATTTATAAATAATTCTGGT TATTAAACTGGTGTAAAGTTGTCACATGAGTGATTTACACAGCCCCATTTAATATTTATTTATTTATTTATTTTTTGATT AAGAGGGGGGGTCAAAGCCCCAGGAAACAAAGAAACTACAAGATAAATCGGGGGAAAGAAACCCCAATAACATCATCCCT TATAAATGGGAAGAGAGAGCGAGGAATATTTGTAAAATTAAAATCTTCTTCAACAGAATTGTGGCCAAGGCGTGCTAGGT GATCAGCACAACGGTTTCCTTCCCTGTAGATGAAGTGGAAAGTTACTGCCCATCTTTGAGAAGCAAGGTACTGAATGTCC TTAACCAGATCAGAGCAAGGGTGGCCCCGAGGGCATCGCACAGTGATCAAATCAAAAGCAGTTTTTGAGTCCATCTCAAC TGAGATAGCTGGCGGAGAAAGGGAGAAAGCTAGCCGGAGACCTTTTAAGACTCCCCAAAGTTCAGCTCTAGTGATGCTAC AGATTCCCAAAGGGGTAGAAAAACCAGCAAGAACCTTCCCCATGTCATCTCTAATGAGGCCACCACAGGATGCTTGGAAG GAGGTTTGGAAAACTGACCCATCAGAATTAACTTTTAAAATACCTGGCTTGGGAGGCTTCCACCTAATATTTATATTTAT ATATATCTTTTAAATTTTATGATTTACATTCCTTTTCTATTTTTTATCCTTTTTACATCATTTTGACTTTTTCATAGTGG TTATCATATTTATTATTCAATATGATTTAGATAAAAAGGGTAAATGAGTTACGTAAAGTAATAATGAAAAATAATATTAA AAAAAAGTAATATCAACATTCAAAATTGTATAAAATGATTAAAGAACAAGGAACATTTCTTCCTTATGTAACAAAAAAAA TAACAAGGAACATAAAATTTAATTATTTATACATTAAAAAGATAATCCATATGAATAAGTTTTTTACCAACGCAATGATC CAAACCTAACCAATCTGATTTTAATCAAACCGATTTGGTTAGATTTTCTATAAAAATTATAAAAGTTAAACAAAACCAAA TTGATCAAATTTAATCGGTTAAAATTATATTTCACCTCAAACCTGAACTAATAAAATTGGTGAACACCTAAATAATAAGG CTTAATTTTATTTTTGGTCCTCCTCTTAATTTGGACTTCATGTTCTTGGTCCCTCAATTTCTTTCGAACTAATCAAGTCC CTCTACTTTCAAAATTAAACAAACTTGGTCCTTCTTTGAATTTTCCTTAAAGTCACTGATTATTTTTATTTTTTCCAAAT ATTGTAGGGTTTATTATATACTTGGCTCCGTTTGGAAGAGCTTATTTGAGCTTATTTGATAGTATAAGAGCTTGTGCAAG TGTTTGACATAGCTTATGTAAATAGCTTATGACCTACCATAAGCTGTTTTGAGCTTATTTTCATAAGCTATTCAATATAT CTTATGAAAAAGAGCTTATGCTTATATATAACTTATTTTCAATTTATTTCAATAAAATTTTTAAAATATTTTATGAATAT GCGCTTATGACCATAAGCACTTAAGTAAGCTGTTTTCTCAAACGGGCCCTTGATATATATATATAGGCTAAAAAGCACTT TTGGCCCCTGATGTTTCAACTTTGTGCAAATTCTGCCCCTACTCTATTTTTGTCGATGTTTCTACCCCTCATGTTTTCAA ACAGTGCATTGTCTACCCCTCATGTTTTCAAACAGTGCACCGTCTACCCCTGACGGAGGGGTAGACGGTGCACTGTTTGA AAACATGAGGGGTAGAAACATCAACAAAAATAGATAGGGGCAGAACTTGCACAAACTTGAAACATCAGGGGCCAAAAATG CTTTTTAGCCATTTATATATATATATATGAGTGGTTAATACATAGGTAGATAATAGAGGAGTGCTTAATGATGTATTGAT AAAACTCAAGGGGGGTAGAAAAGATAAAACTCAAGGGAGGAAATGAGTTGACAAAACAATAAAAGGAAAAATACATAATT CAACCTCAAAAAAAGAAGAAGAAGAAAAATACACAATTCGAAAAACAATATCTAGTGTGGCCGGGTGAGGAAGGGTTCCG GTGTTTGCACAGTGGACTTGCAAAAGCATGTATGATCAAACCCAGACCAATGTTATCTATCCAAATTCAAAACTGCTTGT GAGTCTCTTGTCTTGTTTGCAAAACATTATACCCATTTATTTTTTTATTTGCTTCTGTATATATAGTATTCATTATTTGC TCTCATTATCCTTTTGGTTTTAGGTGGGTTTGGTAAATGGAGTCTAAATTATCATTTCTTGCTTCCTCAAATGTCTTTTC TTCATCATATTCTACCCCTTTACCATTTTTCATCTCAAATAAACCAAAGCTTTGTGTTTCTGTGAAATTCCTCAAACAGT CCCAAATTTGGGGGAGGAATTTGAGTTTGAGTTTGAGTTTTGTTCCTTCACAGTCACAAGGGAATGTTAAATTTGAAACC CCATTTCAAATTAGGCCTATGAGAGTGAGAGCAGCTGTTAAGAGAAGGAAAGAGCTTCCCTTTGATAATGTCATACAGAG GAACAAGAAGCTCAAATTTGTTCTCAAGGTCAGGAAGATTCTGATGAGGCAACCGTATCGGTTCATGTCGGTTAAGGACC TGGGTAGGTATAAAAGAGAATTGGGTTTGGATAGGAAGAGGAGATTGGTTGCTCTGTTGAAGAAATTCCCTGCTGTGTTT CAGATTGTGGAAGAAGGGGTTCACTCTCTCAGGTTCAAGATGACCCCTGATGCCGAAAGGCTTTATTTTGAGGAATTGAG GGTCAGGAATGAAATGGAAGATTTCTTAGTTCTCAAGCTTAGGAAATTGTTGATGATGTCCATGGAGAAACGGATATTGT TGGAGAAAATAGCACATCTCATGACTGATTTGGGGCTCCCTCTGGACTTTCGTGACACCATTTGTCGCAGGTACCCTCAA TACTTCAAAGTTGTAGCAACTGAAAGAGGGCCTGCCTTGGAATTAACACACTGGGATCCTGAGCTTGCAGTTTCTGCGGC CGAGCTATCCGCGGAAGAAAAGCGGGCCAGAGAACTAGAAGAACTAAATTTAATCATAGACAGGCCTCCCAAGTTCAATA GAGTGAAGCTTCCTAAGGGTCTTAATCTTTCCAAGGGAGAGACAAGGAAGCTAATGCAATTCAGGGACTTGGATTTTATA TCGCCTTACTCGGATTTCTCAATGCTGAGGTTTGGGTCACGGGAGAAAGAGAAGCATTCTTGTGGAGTTGTTCATGAGAT TTTGAGCCTCACTCTTGAGAAGAGAACTCTTGTTGATCACTTGACTCATTTCCGGGAGGAGTTCAGATTCCCTGAGCGGC TGAGGGGGATGTTGATTCGGCATCCCGATATGTTTTATGTCTCTCTGAAAGGAGATACGGATTCTGTGTTTCTGAGGGAA GGTTATCGAGATTCTCAGTTGATAGAGAAGGACCGATTGTTACTGATCAATGAAAAACTCCGTTCTCTTGTTGATGTTCC AAGGTTTCCCAAGGGTGCTGCTCGCAGAAGGGTTGGAGATGGCATGGAAGGGAATGATAGTAGAGAAGATGCAAGTGGTG AAGAGGAACAAGAATGGTCAGATGTTGATAGTTTCATGAGTGATGATGGATTTGATGACAATGATGATGATGATAACGAT ATCTGGAGTGATGATGATAACTGGAGTGATGAAGATGATGACGACGATGATACAGCTTCAGATTATGATGATGCAGGAAC ACTGGAAATTGGACAAAGAAAGACAATTAAACAAGTTGAAGGCTCAAGAAAGAATAAGGAAAAGGTCCTTGCTCCTACAT TACCTGATGCTTACCCAAGAGAACCGTGGTGATCTTCACAGGATTTTTCAAGCTCTGAGTTTCTCGTGAAAAAAAGCATC CGACTTAAAATCTTAATATGTACTGGCTGATTTGTGATGGCTTCATTAGGCAATGACTTCAAAATTAATCTCGGAAGAAC CTTTGTTGACCATCTACGGACTATGGTTCCTGAATTCGCTTTGTTAACAACAAAGAAGCATATGTCATGTCCAAACTGAA ACAGGATGTCCAACGGAGGTAGATGACTATATCTGTTACCTACTTTACTGTTTAATAGATTGATGCTTTTTAAGTAAGTA GTTTTATCTTTAAAACTTATGTTTGGAGGGTGAAGTGGAATGAATAAAATGATTGAAAAGGTTCATAAATTCTTCACATC GATTTCTCAACATTAAGTATTATGCTATACAAATTTGCATGTATAATGAAATTAGTATGATAGCATATTTAGTGTGAAGT CTTTCAGATTTTTCTGAGTGCCAATTGATTACATTATAAATATTGCATACATTGAAAGTATGAAGTAAATCCACTGTTTT ATGATCTTTCTTATGTGAAATATCTAAATCCACCCCTGTTCATGCATTTTCAATTTGACTTGCGTATTGCTCGCATGATT TATCAAGGCTCCTCTTTTCTTGTTGCTTGTTTCATGTGCCACATTCATAGTGACTGTACTGAAAGAGTTGATGTTGAAGT AAATAGAACAGGAAAAGTACGAGCTAGTTGAATTCAAGGAATTGAAGTGTTTTCTGAAATATTAAACTGAATTAAACCAA TTGAAAGTGGACTGGGCGGGATATAAGTATCCCTTATTCCCGCCCAAATCGAGCATTTAGATGAACGAAAGCAGTCATGG CGGGGTTTATTGAATAACGTCGAAGCCCGCCCGTCTTCTGGATGGGTCCACACGCCAGCTGGAAGATTCCTTTTAGTTTT GTCTTATATGTATAGAGGCTTGGGCCCCGGTTATCAGGCCCAAGTACAGTGACAGTCCATGTTATGATCATTCCCTCTAT AAAAGGAGAGGTCAACCCCTTGTAAAAAGCACCTTTCGAACATTTAATGAGAATATTCCTTTTGTGATATTTTTAGTACT CTGCTAGGGTTTACTTTCTGTAAGTTTCCGACGTCAGAACTCCCTAGTACGGAACAGAAAGAGATAGAGTTTCTTATTCA ATATGACTTTATTTCTTTTGTGAATTAAGTTAGTCATTTTTATCACCAATTTTTCTCTAGATGTTGCTAGTGTTGTTTCT TCTGAATCAGGGTTTAATTTGTTTTAATTTTTATTGGATTTTTATCTCAAAGATTGTGGTTGCCTAACCTTCTTTTCTTT TTCACTTCAGATTTGGCGACCTTAGAGAGTTGAATCAGTTGATGAACTGGAGCTGTAAAGGTCATGAGAATTTCAGAATT GGTATGATCAGCATTTGTCCTCTCACTAACACTGCAAATCTGCAGTCAATGATATGATATAGACCTCATGAGTTGTGATA GAGTGCAAGAAATTTGGCTCTTGTTTAGATTGCTTTTGGGTGCATATTTTACTATCAATGGTAAAATTATTCTAGACAAT CTTTGCCCAATAGAGTTCGACCTTTTCCCTCATTGTTGATTGATTTGCTTAATAAGTAATAACTTACAAGGGCCTATTAT TTACTTTAGATGGAACAATTTTTACGTAGATTCAGCCCAAGTTGGTTCCAAGAAGAGAGAAAGATTGGACACCTGATTAA GAAATATGGGGCCTCTGGAAAACTTAATGGTTCGTAGCAACCAGATATCATACTGATTGAAAGCTTCCCCATAGGTAAGA ATGGGATAATTATGTCAATACTAAGAAAATAAATTGCAAGTTTCTGCATAATAGTTGAAAGGACCGCATAGCTGCCCATC CCTTCATGTGTGATTGGGACGGAGTCACCCTTAAATGCTTCAACACCTCCTACTCAAAGCCAGTGAAAGGGAGGCAGACA TTTAGATTAGTAAACATGTAATCGTAAACATACATAAAATGACCTGATTTCATGCGCAAATCGCACACATGACCATCTTC CTTGGAACTTCGATGTTGAGTTTCCTCTCTGTCCGACCTCCCTCGGTTAACCTGAAGCATTCCCTCAGGTCACATGATCT CCACCCATGAAGTCATTGCTGATTGAAAGAACTTCTAGGTCAATCCATGGTGAAGCGAGATGACGACCCCTAAAAGAGTC TTATACCGCAGAGGTAATCTTTAGGTGGTGCTGCATAAGAACACTTGGGACCCATAGAGAAGCTATAGCCAAATAGGAGA GAAGTACAAACAAACTATTCACCAGTATACCACATGGGGCAAGCCGGCCAAACATCTCATTGCTTCGGACCAAAGACTAT CTCAGATCTTAACATTCTAAGCATCCTTATGCCTCGAATACTCGAGGGAAAACTATTACGGAATAAAAGGATAGGCTCAA TACTTTGACCCAATATTGACAAGTCTACTTTGACTCAATATTGACAAGTCCTACGCATGTGAGGATAAAGATTTCTAATT TTGCTAAAATCTACTATAATATAATACTCCCTCCGTTCTTTTTTAAGTGTCATTTTAGTATAAAGCTCTCCAACCAAGAT AGTGGATTGTTAGAGGGTTTTTTCCCATTCTACCCTCTCACATCTTAATCATAAAGTCATAAAGCTCTCTAACCAAGATA GTGGATTGTTAGTTTTTTTTCCACTCTCTCATATCATTAAACCATCTACCACTCTCACCCAATCATAAAGTCATAAAGCT CTTCATAGTTATTGAGAAAGGAGAATTTTATGGAAAATGTGAAGTTGAGTTATTGAAAAAGTAAGGGTATAATTGACAAA TAGAACCTTAAAACATCAAAATGACAGTTAAATGGGAACAAAAAATTCTTCTAAAACGACACTTAAAAATGAACGATGGG AGTATCTATTACATATCGACATATCAATATCATATCTTCATATGATTCCTTCCATG
CDS sequence (LotjaGi6g1v0017300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTAAATTATCATTTCTTGCTTCCTCAAATGTCTTTTCTTCATCATATTCTACCCCTTTACCATTTTTCATCTC AAATAAACCAAAGCTTTGTGTTTCTGTGAAATTCCTCAAACAGTCCCAAATTTGGGGGAGGAATTTGAGTTTGAGTTTGA GTTTTGTTCCTTCACAGTCACAAGGGAATGTTAAATTTGAAACCCCATTTCAAATTAGGCCTATGAGAGTGAGAGCAGCT GTTAAGAGAAGGAAAGAGCTTCCCTTTGATAATGTCATACAGAGGAACAAGAAGCTCAAATTTGTTCTCAAGGTCAGGAA GATTCTGATGAGGCAACCGTATCGGTTCATGTCGGTTAAGGACCTGGGTAGGTATAAAAGAGAATTGGGTTTGGATAGGA AGAGGAGATTGGTTGCTCTGTTGAAGAAATTCCCTGCTGTGTTTCAGATTGTGGAAGAAGGGGTTCACTCTCTCAGGTTC AAGATGACCCCTGATGCCGAAAGGCTTTATTTTGAGGAATTGAGGGTCAGGAATGAAATGGAAGATTTCTTAGTTCTCAA GCTTAGGAAATTGTTGATGATGTCCATGGAGAAACGGATATTGTTGGAGAAAATAGCACATCTCATGACTGATTTGGGGC TCCCTCTGGACTTTCGTGACACCATTTGTCGCAGGTACCCTCAATACTTCAAAGTTGTAGCAACTGAAAGAGGGCCTGCC TTGGAATTAACACACTGGGATCCTGAGCTTGCAGTTTCTGCGGCCGAGCTATCCGCGGAAGAAAAGCGGGCCAGAGAACT AGAAGAACTAAATTTAATCATAGACAGGCCTCCCAAGTTCAATAGAGTGAAGCTTCCTAAGGGTCTTAATCTTTCCAAGG GAGAGACAAGGAAGCTAATGCAATTCAGGGACTTGGATTTTATATCGCCTTACTCGGATTTCTCAATGCTGAGGTTTGGG TCACGGGAGAAAGAGAAGCATTCTTGTGGAGTTGTTCATGAGATTTTGAGCCTCACTCTTGAGAAGAGAACTCTTGTTGA TCACTTGACTCATTTCCGGGAGGAGTTCAGATTCCCTGAGCGGCTGAGGGGGATGTTGATTCGGCATCCCGATATGTTTT ATGTCTCTCTGAAAGGAGATACGGATTCTGTGTTTCTGAGGGAAGGTTATCGAGATTCTCAGTTGATAGAGAAGGACCGA TTGTTACTGATCAATGAAAAACTCCGTTCTCTTGTTGATGTTCCAAGGTTTCCCAAGGGTGCTGCTCGCAGAAGGGTTGG AGATGGCATGGAAGGGAATGATAGTAGAGAAGATGCAAGTGGTGAAGAGGAACAAGAATGGTCAGATGTTGATAGTTTCA TGAGTGATGATGGATTTGATGACAATGATGATGATGATAACGATATCTGGAGTGATGATGATAACTGGAGTGATGAAGAT GATGACGACGATGATACAGCTTCAGATTATGATGATGCAGGAACACTGGAAATTGGACAAAGAAAGACAATTAAACAAGT TGAAGGCTCAAGAAAGAATAAGGAAAAGGTCCTTGCTCCTACATTACCTGATGCTTACCCAAGAGAACCGTGGTGA
Protein sequence (LotjaGi6g1v0017300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESKLSFLASSNVFSSSYSTPLPFFISNKPKLCVSVKFLKQSQIWGRNLSLSLSFVPSQSQGNVKFETPFQIRPMRVRAA VKRRKELPFDNVIQRNKKLKFVLKVRKILMRQPYRFMSVKDLGRYKRELGLDRKRRLVALLKKFPAVFQIVEEGVHSLRF KMTPDAERLYFEELRVRNEMEDFLVLKLRKLLMMSMEKRILLEKIAHLMTDLGLPLDFRDTICRRYPQYFKVVATERGPA LELTHWDPELAVSAAELSAEEKRARELEELNLIIDRPPKFNRVKLPKGLNLSKGETRKLMQFRDLDFISPYSDFSMLRFG SREKEKHSCGVVHEILSLTLEKRTLVDHLTHFREEFRFPERLRGMLIRHPDMFYVSLKGDTDSVFLREGYRDSQLIEKDR LLLINEKLRSLVDVPRFPKGAARRRVGDGMEGNDSREDASGEEEQEWSDVDSFMSDDGFDDNDDDDNDIWSDDDNWSDED DDDDDTASDYDDAGTLEIGQRKTIKQVEGSRKNKEKVLAPTLPDAYPREPW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 5 | 14 | 10 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 531 | 512 | - | – | |
| PANTHER | 67 | 498 | 432 | 1.8E-219 | ||
| PANTHER | 67 | 498 | 432 | 1.8E-219 | – | |
| Pfam | 86 | 413 | 328 | 2.4E-104 | ||
| Coils | 250 | 270 | 21 | - | – | |
| MobiDBLite | 422 | 436 | 15 | - | – | |
| MobiDBLite | 422 | 531 | 110 | - | – | |
| MobiDBLite | 437 | 491 | 55 | - | – | |
| MobiDBLite | 504 | 518 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0017300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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