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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0017800 |
| Transcript ID | LotjaGi6g1v0017800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G51190.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5; TrEMBL-Plants: tr|I3SB66|I3SB66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0017800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:3102320..3104047) extracted from Lotus japonicus Gifu genome v1.2.
CAGGAAGGAAGTACCGTGGAAATGCCATATCGTGGACTGGTAGTCCCCACTCCCCAATGTTTATCTCAAAGTCAAGTTGA GGTTTGAAAACACCCAAAACGACAAAACAGAGACCAAACATTAATAAATTATTGATAGCTACCAAACGATGCTTCCTCTC TCCATCTTGGAATCCCACTAGAAGCCCACCTCTTGATAATTTTCTTCTCTAACACTCAAATTTCTCTCATATTTATGTAC CCTTCACTCCCCATTTTCCACTCAAACCATTCTATTCTCATTCTCCAATTTTACTTTTCCTCCTCCAAGAATCATCAAGT CTTCTCTCCACAAATCACCACCACAACACAATAATCAGAAATATGCAAACCTTTGAGCCTAGCTTCACTTTTTGCACCCC ACAAACCTCAATTTTAGAACCCCTCAACTCTGATATCAGTATCAGTGATTACTTTCTACCCCAACAAGTTGTTCCCAGTT TCTCCAAGCCTCCAAGATCTTCCTCAAATCTAAGCAACCGCAAACCCTCTTTAAACATCTCAATCCCTTCAATAAACTCA GGTCTCAAATCCAATATCTCACAGAGCAAAGAAACAAGCTTTTCCCATCAGAGCTCTTCTTCTTCTTCTTCAAGTGACCA CCAAACCCAAGAGGAGGACAATAACAAGCACTACAGAGGTGTTAGAAGGCGACCATGGGGGAAATTTGCAGCAGAGATTC GTGACCCCAATAGAAAAGGGTCAAGGGTGTGGCTTGGGACTTTTGACACAGCCATTGAAGCTGCTAAAGCTTATGACAGA GCTGCTTTTAAGATGAGAGGAAGCAGGGCTATACTGAACTTCCCTCTTGAAGTTGGTAATTGTCATGAAGAAGAAGAATC ATCAGTTGTTAATGTTGGTGAGAAGAGGATTAGAGAAGAAGACAAGTGTGTGGAGGAGAGTGTTACTGTTAAGAAGCAGG TGAAGAAAGAAGAGTGCTCTGATCCCAATAATGGGGTTTCTGTTTCTGCAGCAACAGTTTGCCCTTTAACTCCCTCATTG TGGAAAGGGTTTTGGGACACTGATGTCAAGGGAACTATCTTCAGTGTGCCTCCTTTGTCACCCTTATCTCCACTCATGGT TGTTTGAAATTATGGACTCTTGAAAGTTACTTATCCATGATTTTAACCAACCATAATTCTTTATGGTATTTCCAAATATG CATTGAGATGATACTAGTGCTTATCCTCTATTACAGAAGTGGAAGTAGATAAGGCAGAAGGATGGTTTGTCTCTACCAAA ATAGGAAAACTAATAGTATATTTTTCCAGGTGAAGATATATATATTGGTTTGTTTAATGTAAATATAGGATAGTGTGAAG CTAGCTACATTAGTTTTTTTGGGGAAAGTATTATGGAAATTTGTTTATTCATTTATTGGATCAAAGTATATTGTCTATAA TTTAAGGATTGCCACAAGTGAGAGTTGTTATTAATTTTCATTGTTTACTTGATTTGGATCAAGGTTGGTCTCGCAACATC ATTTATTGGATTCCTATTTTCATAGGAATATATTGGTTATTTAAAAAAAATAAAATTGGAAAGAGCAAATTTGGGATGAG CTTCATCTCAATGCATATTGTGAGCAAATTTGACTTAGAATTCATCTTCATAAGAATTTTCGTTAGGGATGAGCTTGTTT ACATTGACAATCAAAAGGGAAAGAGCAAAAACAAGAAAAGAAAACTAC
CDS sequence (LotjaGi6g1v0017800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACCTTTGAGCCTAGCTTCACTTTTTGCACCCCACAAACCTCAATTTTAGAACCCCTCAACTCTGATATCAGTAT CAGTGATTACTTTCTACCCCAACAAGTTGTTCCCAGTTTCTCCAAGCCTCCAAGATCTTCCTCAAATCTAAGCAACCGCA AACCCTCTTTAAACATCTCAATCCCTTCAATAAACTCAGGTCTCAAATCCAATATCTCACAGAGCAAAGAAACAAGCTTT TCCCATCAGAGCTCTTCTTCTTCTTCTTCAAGTGACCACCAAACCCAAGAGGAGGACAATAACAAGCACTACAGAGGTGT TAGAAGGCGACCATGGGGGAAATTTGCAGCAGAGATTCGTGACCCCAATAGAAAAGGGTCAAGGGTGTGGCTTGGGACTT TTGACACAGCCATTGAAGCTGCTAAAGCTTATGACAGAGCTGCTTTTAAGATGAGAGGAAGCAGGGCTATACTGAACTTC CCTCTTGAAGTTGGTAATTGTCATGAAGAAGAAGAATCATCAGTTGTTAATGTTGGTGAGAAGAGGATTAGAGAAGAAGA CAAGTGTGTGGAGGAGAGTGTTACTGTTAAGAAGCAGGTGAAGAAAGAAGAGTGCTCTGATCCCAATAATGGGGTTTCTG TTTCTGCAGCAACAGTTTGCCCTTTAACTCCCTCATTGTGGAAAGGGTTTTGGGACACTGATGTCAAGGGAACTATCTTC AGTGTGCCTCCTTTGTCACCCTTATCTCCACTCATGGTTGTTTGA
Protein sequence (LotjaGi6g1v0017800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTFEPSFTFCTPQTSILEPLNSDISISDYFLPQQVVPSFSKPPRSSSNLSNRKPSLNISIPSINSGLKSNISQSKETSF SHQSSSSSSSSDHQTQEEDNNKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDRAAFKMRGSRAILNF PLEVGNCHEEEESSVVNVGEKRIREEDKCVEESVTVKKQVKKEECSDPNNGVSVSAATVCPLTPSLWKGFWDTDVKGTIF SVPPLSPLSPLMVV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 254 | 223 | 1.1E-87 | – | |
| PANTHER | 32 | 254 | 223 | 1.1E-87 | – | |
| MobiDBLite | 40 | 107 | 68 | - | – | |
| MobiDBLite | 40 | 94 | 55 | - | – | |
| CDD | 102 | 161 | 60 | 5.52491E-34 | ||
| Gene3D | 102 | 164 | 63 | 1.7E-33 | ||
| SMART | 103 | 167 | 65 | 5.5E-38 | ||
| Pfam | 103 | 153 | 51 | 7.5E-15 | ||
| SUPERFAMILY | 103 | 163 | 61 | 2.48E-23 | ||
| ProSiteProfiles | 103 | 161 | 59 | 24.46 | ||
| PRINTS | 104 | 115 | 12 | 1.9E-10 | ||
| PRINTS | 127 | 143 | 17 | 1.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi6g1v0017800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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