Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0022300.1

Overview

Field Value
Gene ID LotjaGi6g1v0022300
Transcript ID LotjaGi6g1v0022300.1
Lotus japonicus genome version Gifu v1.2
Description Nodulin MtN21/EamA-like transporter family protein; TAIR: AT2G05755.1 Nodulin MtN21 /EamA-like transporter family protein; Swiss-Prot: sp|Q04835|YM87_YEAST Uncharacterized membrane protein YMR253C; TrEMBL-Plants: tr|A0A151SC65|A0A151SC65_CAJCA Putative membrane protein YMR253C family; Found in the gene: LotjaGi6g1v0022300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:4210608..4219009) extracted from Lotus japonicus Gifu genome v1.2.

GGGCCCGCTCGGGTCTTTCGAAGGTATATGTGAACATGTGTTGAGGGATCAATCTGCAGTAAGTGAAAGTTCTAGGAGCA AATTGGGTATTCACTCAATTTTAAAGCCGTGCAAGAGAGAGAGAAACACAGCAAACAGCGACCCCACCTTCGTCTGACCG TTTCTCAGTCCCTTCCAAGTTTTCATTCCACCCCGTGGTTGCTGCACACACCTTCCATCATCAACCTTCGATTCGACGTC GTTCCGATTCAAATCTGAATGCGCCGACAACAGCAATGGCATCCCCTGAATCCAACGTCGCAGATCACGTTGTCGAACTA ATTGTGCGCGACGCATCATCATCATTGCTGCCGCCACCACCTTCTTCCGGTGACACTGACGATGCCGGAGATGACCAAAT TGCCCCTCTTCTCTCGCATCCTGAGAGACCAAAGATCAACATCTTCACCGCTTCTTACCCTCGAAGAAAACCCAGAGTAA TTCCCTTCTTCAATTTCATTATATTGTTTTTCAATTACAGATCTTTTTTTTCTTAAAAAATGGATAATTTATATAAATTT TTGGAGTTCTGTGTATGGGTCTCATCATGCATATATATGTATGTATTGTGTTAGTAGTGTTACCAAGTTCACATTCAAGT CTCTATGTGGCAACATGTCTTGTACACTTTGGATATGTTTAAAAAGTATTAATTAGTATATAGATATCATACATTTCATT TCATGGATGAGTTGTCATTATAGAAATGTATAGTTTGAGCGGTGAACCAGGATTTACAATAACAAAACTTTAACTCAAGC TAAGATTTTCTTAGTAATACACCCTTTTAAGCATTAAGCACTTTAAACGAACCCTGAGGAGGGACTAATTTACTAACAAT TAACATTTGCCTATAAAAAAAACTTTAAAATTGACTAAAATGCGAAGAAAGTATAATGAAATTGAGATTTTTTTTTTTCT ATGAAAGGGAAGATTTGTTTTTCAACAAATTTTGTGTATACTAGATTCTGGCGAGGCTGTAATGGTGAATAGAAGAAAAG ATGGTTATTTTTTGTGTTTCTGTCAAATAAAATGAATGATTTAAACGAAGGGAAGTTGGTGCAGCAGAACTAATTTCCTT ACCTTGTGTTTGGCTGTAGGATGAAGTAACAAGATTGCTCGAGTCGGAAACATCTCCTTTCACCCAGTTTATATTGTGGG TATGGAATGGGTCCAGATACTCTGGCTTACTTTGTATGCTGCTCTCGTCTACCACTTACTTTCTCATGGGAGTTCTTTCC AATACTCTTTCTGGTAATGTTCTGCTATCATGTTTAACATTATTTATTTGCCCAAAGAAGAAAAACTTTAGCTGGAAAAA GCTAGAAATTCTGATTGGAGTTAGATGTTATGAATTTCTGTGATGTTGGACTTCTATGTTTTATTGATATTTTTAGAGTA GGGAGAATGAAAATGTAAACTCAGTATAATCTCCCCCTCTTCATTCCATTTTCTTAAATGTTGAAGTTAGTCTGATAAAT CTTACATATGTCAAGTATTGGTTTTTACTACATAGGATAGTACTAGGAGCATTAACTCTTTAGCCTGGGACCTCCCTCAA ATAACTGAAAGCCTCAGCACTGATCCTTGCCTGATGGATTTATTGCCGAACATTTAGTATCACTTAAATTTTGTTTAAGC TGAATTTCTCAATTATAGAACAGTCGTTAAACACTTAATTAGCTACTTTTAATTCACTTTGGAAGATTACCATATCTATT CCTTTGTGCATATCCTTTAGGCTTTAATTATAAGTAGAAGTCAGGGAGACAATGGATGCAACACAAGGACTCTCTTGTCT TCACTCTCAATTATATAGCTTTTGCATATTAGTAGCTTTGACAAGCTATCTATGCTAGTATGACCTTCGAATTCAATTAA TTTTTTAGTTGGTTGTTTATTTTAATTGAGGTATTTTTTTTCCAAGATCTACAATTACCTTTTTTCTTTTCATTTTTTCA GTTCTACATTTTAATTTTTGCAGTAACAATTTTGATTTGGCAGTTCAGGCAATTCCTTTGTTTCAGACTGCTTTTACAAG ATGTACCATTATCTTGATACTGTCATATTTGTGGCTGAGAAGGAGTGAACAACCATTATTTGGAACATCCCATGTTAGAA TCATTTTACTTTTAAGGGCAGTTGCAGGCTGTATATCAATCGCAAGTTTTGTATATTCGTAAGTAGTCTCTTAGTATTTT CTCACTCAATATTCATTTGCACTTCATTTGTCTTTTTAGGTTTGTAATTTATCTGTTGGACCTTTTCCCTTCTGTATTTA TCTTTGCATGTTCATAAAATATCATAGTTTTAGCCTTTTAGGATATTACTCGATCATATGGTTTTCTCAAATACTGATAC TTTTTCATGAAGGGCATATTTTATGAAGCTTTCCTGTTTGAACAGTAGTGGGCTAGTGACATTAGTTTCTACTGTAATAT TTAATGAAGAATTTAGCTTTGTGATTTCCCATTACATTTTATGTAACTAATAAATATATAAAGTCTAAACACAAATCAAT TTAATACTTTATAATCTTTTCTCTCATCAAGATGGACTCCATATTAACAAAAAAAAAATCATGTACAATAATTTGATATT AACTTAAAAACTTGGTTTCATGCTTGGACATCATCAATGATTTGCTTTAGTATGCTGAGTTTAGGTGCAACTCTCTTCAT CACTTTTCAATCTTTAATTTCATTGTTTTGATGTCCTTTGGACTTTTTCTTTTGCTATTCTGGGTAGCTTGTGTGTCCCT CCTTGAGAATATTATGAGGTAACAACTACTGTAGTAAAAAAATTCTATTTTTTTATTCAGCTTTCAGAGGTTGCCCTTAT CTCAGGCTATCGTACTGAATTCAACAACTCCAATTATGGCCTCAATTATGGCAAGGGTCTTTTTGCGTGAGAAATTAAAA ATTTCTGATATTACAGGTAAGAGTTCACACTTCATAGTTCTGTCTTGAAATACCTTGTATTATAAAATCATATGATGGAA TGAGGAGAAACTTGAAACCTTATTTTTTATTCAAGTACTTGTTTATATTATGAACAACTACATTTTTTGCTTAAATGTTT GCACGGTATTAGAAAGCTGAAATAGTTTATCAACTGTTAATGGTGTTCATTAATTGTAATTACCATTTGAATCATATATT TGATGTCATATTTCTCTATACAGGAAACTAAGACACTCAAAATTGTGATGGATGGTTCCTATGACAATTGAAAACTAGAG GCATACTAAACCTTATCTAGGGGAACCAAGTAAACTGCATTCTATTTGCACAAGAAAGACAAGAGAGCTGAACTTTAAAA TTCAAGTAATCCCAACCTATATAAGGAAATGGAATGCCAAACCAACTAATGATGAGATACTTATGGCCCCAACGAGTAAA CTGAAAATTCTTAATAATTAAGTCATAATTCCTAAATTACAGTACTCTAGATTCCATATACATATACAAAAAGAAACAGT TTGATAAATATAACAAGTATGCATTCATTATCAATTGCAATTTGCAAGTATTGATCAATTTATTTGACGCTGCCAAATTT TCAGGTCTTGCTTGCAGTTTCTTTGGGGTGCTCTTCTTCTTCCGAGAATTGCTGGCCACACAAGGTATAGTAGGTATTCC ATTTCATATTCTTTTAAATGCATTATCATTTGTATAATTTTTCTGGTATACATGTTTCCTTTAAGTTATAATAGGCTTAC ATGATTTAGAATTAAGAATGCCTTGCATTTTAAGTTTGAATTTATTTCCTGTTGTTCCTAACTTTCTATTCCCTTAGCTT CTCCCCAAAAATAAAATAAAAAGGCTTTTGATCTGTTGGTTACAAGCGGTTTTATGTAATACTAATTTTTTCCCTTTGAT TGATTGAGTCATAAAAACCTGCAGCATCTGGGTTCAGGAAGAACAATCGATATACTTTAACTACTCTTCCTAATTTCAGA ATTCGGATTTTCCAGGACAGTTAGCCAAAGCTGAGGAAGCAAGAAAAGGATCTTCTACGACAAGTCATCATATATTTATG ATCCTATTGGGCCTCTTTTCGTCAATAATTGGTGGCACTAGTTACTGCCTAACAAGGGCTGGAGCTAAGGCATCTGATCA GCCGCTGTAAGATTTTAAATTTCTTTGTTCAGATTTTCTTCATTGATCAAACCCATTATGTTATGTTCCTGGAACTTTGT GCCTCACTTTTCTTTATCTCCGTTTATTTTGATGAAGTTTATACTCACTAGGATATAAAGTAGAATATTTAAGTCCACCT AGTTCCCAATCCCAATCTTTTTATTTTTGAATTCATTCCCTATGAAATCAGTTTATCTGTAGTATGGTGCTTATAAGAAA GTAGGTTGGATATCAGCATAGAAATTTGAGATTCTCATTTTAGTCCATGGAAATTTATCTCACGTGGTTATGCTCCCTCT TTGCTTTCTTTTAGGGCTCGTTTAGTACAGAGGATATGCTAAAGATGAGCATAGATCGAGAGAAAAGGCAGAAGAGAGAT TCAGAAATTTGTTTAAACTGAATTTATTTCATTGGTTGCTGAATACACACAGAAGTTTGATTTATACTCAAGCATAGCAC ACGGCTTTTAACTGATTATGACAGAATCAGTTACAAGCCTTACAGAAACAGCTAACTAATTACATGAGTAGTAATCTAGT TCATCTCACCCTAGCTAGCTTTAATACAATCAGACCTGAATATTACATATAACCTAATATTACCCCCTCAAACTTAGTGA GGCTGAATTTTTTTCTGCAACACTGAGTTTGTTTCTTAGAATCTGAAACTGATTTAGAGAAAGAAGTGTTTGTATTAAAT ATGATTTTTTTTCTATGAAATTACACGGTTCATATTTAACTCAATTAAATTTTCTACCAAATACTGTTGTAATTACTCAA GGTATATACTGGAGACACATTATTGGAGCAATGACTGACCTTAGGTTTTGTGATGTTAAATAACTGACTTTATATTATAT AAGATGGGTCTAATCTTCTAACATGCACAGTTTTTCAAATCGATTCTTTATCATCGTATATTCCTGAGGCCTTCTCCATA TCATTCGTCAATTATCTTATGAAGTGGGATCGCGTATTATTGATCAAATTCATGCTAATTAGATATGAGTTCTATTCTTA TCACATAGATGTAGGAATGCAAAGTGCTATTATTCATTGTAGAATATTTACTATCAAAACCAAAATATTGGTGTGAATTA CTAGCTAAATGATCCACCGGTGTTTTAGATATTGTATTTTAGAGAGTTAATGTATCTTTATCTAAGTTCTATGAATTACC TTTTATTGCAGGTTGACTGTCTTTTCATTTGGCGTACTGGCTAGCCCTGCAATGGGAATATGTACTTATATCTTTGAGGT AAGTTTTTTATTGAAATTTCATTTAGCTACCTTTCAAAATCAATGTTTCGGATATATTTCCCTCCAGGAAGGTGATTTAT GCCTTCATCAATCAATATTCGGAAGAAATGTGAAAGTTTTAAAAAATTATTGGCCATATTATGCCTACCTTTCAAAATTA TTGGCCTACAACGGTCTTAGAATTCAGGTTAGGCCTAACTCTATCTCAAAAGTCATCTTAGGTAAGGGTTGCTCTACCCT TTATAAGGATTTTCTTGGCCATATCTCGAGTCAATGTGAGACTTCTTAACACACCCATTCACGCCCAGGGCTGGACAACT GGAGCGTGGAATTTGCAGGAATGAACACCCGCGGGTGGCTCATATATAGGTGGTCTCCAATAAATGGATTTAGAATAGGC TATTGTTTGTTACCATCTTAGAATTTGGGTTAAGCCTAACTCTACCCGAAAAACTAGCTTAGGGGTCAAGGTTGCTCTAT AAAGACTATATTGGCCATATCTCTAGCATAGTGAGACTACTCAACAATAAGCTTCCTGAATATCTGTATTGTTTATCGTA ATTATTATTATTATTATTGTAATTATTATTATTATTATCAGCACCGTCATTACTATTATAACTATTTTATTGCTTTCTTT TCGTAAATCTTTCAGTATAACCTTAACAATCTATCATTTCTGATTCTAAGCTTCTCTCTCTCTCTCTCTCACACACACAC ACACACACACACTCGTTCTCTCTCACATTCTGAGTACAATTTCTCTGATTCTATAATCGTTATGTTTATGGATAACTTTT TTCTTGCAACCTATGCACTGTTCTGATAGTAGTTGTTGCTAGTGAGGATCAGGCTGTTTCATATCTATCATGTAGTTAGT TCTTATAAAATAATGTCTCCTTTATACAGGATTTTGTACTACCAGGATTTCAGTCAACTGTACTTATGCTTGTACTTGGT ATTCTGGCCTTCTTTGCTGAGGTACAACTCTAAGCTGTGTCATGATAGCTTGGTTTCTTTTCTTGTTTTTTTTTTTTTTT AAATAAATAAAACTGCTGATGTATAAGCGATTGATATAATTAAGGCTTAATTGCAACTTTGATCCCCGACGTTTACCAAT GCCACGATTTTGGTCCCCCACCTAATTTAATTACATGGATGGTCCCCGACGTTGTAGGTCGTGTGCAACGTTAGTCCTAC CGTTTATTTCTTAATGGAGGAGGCTTACGTGGACGTCTAGTTGGAGAGAAAAAGGAGGTATGAGGAGAGAGGGAAGCACG TGGGTATCACGTGAACTCACGTGAACCTTATATGAACTCATTATACCCAAATCTGAAACCCTAGGGATCTAAATCGTGTT ACCTTCTTCGTTCTAGGGAGGTCAGGGGTTTGGGTATAATGAGTTCAGATAAGGGTCACGTGATACTCACGTGCTTCCCT CTCTCCTCATACCTTCTTTCTCTCTCCAATTGGACGTCCAAGTAAGCCTCCTCCATTAATAAATAAACGGTAGGACTAAC GTTGCACACGGCCTACAACGTCGGGGACCATCCATGTAATTAAATTAGGTGGGGGACCAAAATCGTGGTATTGGTAAACG TCGGGGACCAAAGTTGCAATTAAGCCTATAATTAAATATTGGTTTTGATCATTTTGTAGTTGAACATTGAAATGAGGACT ATCTATGTGTTTTATTTCTAGAATGATAGCAAGATAGTAGAAAATAAGATGTCAGAAATAAAATGTCATTTAGAATGGTG TAGTTTCTGCCTGTACTAATTTAATGAATAATTTATCTTGCTCTTATTTACTACATGGTTCTGCTCATTCTAGTGAATCT GGATGTAGCATTTCTCAAAACTTTTCTCTTCTACCCTATGCCGAAGAGACTAGTAGAGCTGTAATTGTAGTTCACATCAT CCAAATTTGAATCGGAGTCTGTCTACTGTCTAAACTACCTTACCCCTTCTGCCAACTCCTGTCAGAGTCACCTGCCAGAG ATGCCTCATGATTGTGAAAATCCACCTCCTTTGAACTCTCTGCAGGCTTACCAGCATAGGCCACCACCATGTTACAATTT TGGATTTAGGTTACAGGGAAGACAGAAAAGAGAGTAAGGTGGCTAATAGTAATCAACCGAAAATATGATTAATAGATGTA ATGTATTACAATATCTAAACTTCCTATTTGTACTGGTTATTAGGTCAAGTACTACTATACTAGTATGTATGTCTGCTTTC AATAATCCCTAGACCACCAGTGTTACCGTACCCATTCTTGTATGATAGAGTTGTCATTTTGGCTTCTTTTAGTGATCAAC TAGTGGTCAAGGTATGTTGTTTCCTGCGGGCAGTCAGATTTGAAGGGTTTATTGTATTATGTTATTCCTATTTGCTTCTG TTCTCATTTCCTTTTGCTTTTTTAGGAGGAAGCCCTATTGCATTTCTTGATAATGAATTTGTTGCAGGTCTTGTTAGCAC GCGGACTGCAACTTGAGAAGACTGGTAAAGTTGCCAACATCCTGTATATTGAGGTATATGAAACTAACTAATGTGCATTC TGTCAATAGAATTTATGCATTATATCTCAGTTCTCAGCTACCTTTCTGTGTTTCAGGCAGCTCTAACCCAATTTTGGAGC CTTGCTTTTACAAGAGTGGCTCCATCTTTTGATCACCTCGTTGGGATTTTACTCATAGTTATCTCTGTAGGTTTCACCTT GTATATAGGACCTGACAAGGAGATGGAATGATAACTTTGAGATTTGAGTGATGTATTTGATATCATTTGTTATATTCATA TTGAGTCTCCTTGAAATCAACCAATCACAATTGCACAAAGTAAATTACCTAAGCTTAAATTCTTTCTCGTCAGAAAGACA CTAGAACACGATGCAATTTGACTTTACTGTACAATCTAAATAATTTTCATAAAAACATAACCATGTGATTTGAACAGTAG GC 

CDS sequence (LotjaGi6g1v0022300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCCCCTGAATCCAACGTCGCAGATCACGTTGTCGAACTAATTGTGCGCGACGCATCATCATCATTGCTGCCGCC ACCACCTTCTTCCGGTGACACTGACGATGCCGGAGATGACCAAATTGCCCCTCTTCTCTCGCATCCTGAGAGACCAAAGA TCAACATCTTCACCGCTTCTTACCCTCGAAGAAAACCCAGAGATGAAGTAACAAGATTGCTCGAGTCGGAAACATCTCCT TTCACCCAGTTTATATTGTGGGTATGGAATGGGTCCAGATACTCTGGCTTACTTTGTATGCTGCTCTCGTCTACCACTTA CTTTCTCATGGGAGTTCTTTCCAATACTCTTTCTGTTCAGGCAATTCCTTTGTTTCAGACTGCTTTTACAAGATGTACCA TTATCTTGATACTGTCATATTTGTGGCTGAGAAGGAGTGAACAACCATTATTTGGAACATCCCATGTTAGAATCATTTTA CTTTTAAGGGCAGTTGCAGGCTGTATATCAATCGCAAGTTTTGTATATTCCTTTCAGAGGTTGCCCTTATCTCAGGCTAT CGTACTGAATTCAACAACTCCAATTATGGCCTCAATTATGGCAAGGGTCTTTTTGCGTGAGAAATTAAAAATTTCTGATA TTACAGGTCTTGCTTGCAGTTTCTTTGGGGTGCTCTTCTTCTTCCGAGAATTGCTGGCCACACAAGGACAGTTAGCCAAA GCTGAGGAAGCAAGAAAAGGATCTTCTACGACAAGTCATCATATATTTATGATCCTATTGGGCCTCTTTTCGTCAATAAT TGGTGGCACTAGTTACTGCCTAACAAGGGCTGGAGCTAAGGCATCTGATCAGCCGCTGTTGACTGTCTTTTCATTTGGCG TACTGGCTAGCCCTGCAATGGGAATATGTACTTATATCTTTGAGGATTTTGTACTACCAGGATTTCAGTCAACTGTACTT ATGCTTGTACTTGGTATTCTGGCCTTCTTTGCTGAGGTCTTGTTAGCACGCGGACTGCAACTTGAGAAGACTGGTAAAGT TGCCAACATCCTGTATATTGAGGCAGCTCTAACCCAATTTTGGAGCCTTGCTTTTACAAGAGTGGCTCCATCTTTTGATC ACCTCGTTGGGATTTTACTCATAGTTATCTCTGTAGGTTTCACCTTGTATATAGGACCTGACAAGGAGATGGAATGA 

Protein sequence (LotjaGi6g1v0022300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASPESNVADHVVELIVRDASSSLLPPPPSSGDTDDAGDDQIAPLLSHPERPKINIFTASYPRRKPRDEVTRLLESETSP FTQFILWVWNGSRYSGLLCMLLSSTTYFLMGVLSNTLSVQAIPLFQTAFTRCTIILILSYLWLRRSEQPLFGTSHVRIIL LLRAVAGCISIASFVYSFQRLPLSQAIVLNSTTPIMASIMARVFLREKLKISDITGLACSFFGVLFFFRELLATQGQLAK AEEARKGSSTTSHHIFMILLGLFSSIIGGTSYCLTRAGAKASDQPLLTVFSFGVLASPAMGICTYIFEDFVLPGFQSTVL MLVLGILAFFAEVLLARGLQLEKTGKVANILYIEAALTQFWSLAFTRVAPSFDHLVGILLIVISVGFTLYIGPDKEME 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 93 93 -
MobiDBLite 20 45 26 -
PANTHER 75 383 309 1.5E-76
PANTHER 75 383 309 1.5E-76
Phobius 94 112 19 -
TMHMM 94 116 23 -
Pfam 95 228 134 9.5E-15
Phobius 113 123 11 -
TMHMM 121 143 23 -
Phobius 124 143 20 -
SUPERFAMILY 131 228 98 1.96E-12
Phobius 144 154 11 -
Phobius 155 177 23 -
TMHMM 156 178 23 -
Phobius 178 182 5 -
Phobius 183 205 23 -
TMHMM 183 205 23 -
Phobius 206 216 11 -
TMHMM 217 239 23 -
Phobius 217 234 18 -
Phobius 235 253 19 -
TMHMM 254 273 20 -
Phobius 254 274 21 -
Phobius 275 285 11 -
Phobius 286 307 22 -
TMHMM 286 308 23 -
SUPERFAMILY 304 389 86 2.48E-5
Phobius 308 318 11 -
TMHMM 313 335 23 -
Phobius 319 339 21 -
Phobius 340 350 11 -
TMHMM 348 365 18 -
Phobius 351 369 19 -
Phobius 370 374 5 -
TMHMM 375 392 18 -
Phobius 375 392 18 -
Phobius 393 398 6 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0022300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…