Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0023100.1

Overview

Field Value
Gene ID LotjaGi6g1v0023100
Transcript ID LotjaGi6g1v0023100.1
Lotus japonicus genome version Gifu v1.2
Description Thymidine kinase; TAIR: AT3G07800.1 Thymidine kinase; Swiss-Prot: sp|O81263|KITH_ORYSJ Thymidine kinase; TrEMBL-Plants: tr|A0A1J7HSI2|A0A1J7HSI2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0023100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:4329639..4331364) extracted from Lotus japonicus Gifu genome v1.2.

TTTGATTTTGAGTTCCCTCCAAATCCCCTGTCTTCCAAAACACGCTCTTTCATTCCCTCCATATTTTTCAAATCAAAATC AAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCACACCGATTCATACCCACTCCCTCTCTTCCTATATATA TATCCCTCAATCTTGTTTCCGATCTTCATCCATCCACCACAATCGCCTCCCTTGCTCTCCAATTTCAATGGCTTCTTCCT CCTCCACCTTATCTCACTCCTCTGGCGAGATCCATCTTTTCGTCGGTCCCATGTTCGCCGGTAAAACCACTTCCCTTCTC CGTCGCATCAAGTCTGAGGTTGACACTGGCAGGTGGGTAATTCACAACCTGATTGATTATAACTCAATGTTGTGATCATT TATTTTTTATTTTTTATTTTATTGTGAAGGAATGTGGTCATGTTAAAATCAAGCAAGGATACAAGGTATGCAATTGACTC TGTTGTATCTCATGATGGTGTCAAGTTTCCTTGCTGGGCATTGCCAGATCTTATGTCTTTCAAAGAAAAGTATGGTCATG AGGCTTATCAAAAGGTAACAATGTTCATGTGTGTGTTTGAATTTCAATTCATTCTCAGTATATATGTTTTACTTATTAGT CATTGGCTATACATGTCTTAAATGGTATAAATTTTAGGTTTTGATTGAAGGGTGGTGCTTTAATTTTGTAATTTATAATG TAATGATAGCTTTTGTAATTCATAATTTGTGTTTGCTGAATGTGTTGATGTGTTTTGGATGCAGTTGGATGTGATTGGTA TAGACGAGGCTCAGTTTTTCGAGGATCTATATGATTTTTGCTGCAAGGCTGCTGATGTTGATGGTAAAATTGTTGTTGTA GCAGGCCTAGATGGTGATTACTTGAGGTACTGTTTGGAGATAACTCAGAATCAATTTTCAAATTCTGAAATTAAATTTGA TTCTGGCTTTAGAGTAGATTTCCAGAAATGCTTAATTTTCTGACTTTGTCTTCTGATTGTAAATGTTTTATGTATTCTTC AGGAGAAGCTTTGGCTCAGTGCTTCACATAATACCACTTGCTGATACAGTGACCAAGTTAACAGCTCGTTGTGAACTATG TGGGAAACGTGCTTTCTTTACTTTGAGGAAAAAGATAGAAGAGACACAGACTGAACTAATTGGTGGTGCTGATCTCTACA TGCCAGTTTGCCGCAATCATTACAAGAACAGTCAAGTTGTCATGGAAGCTGCAAGGAGTGTCCTTGATCTCAAAAAGTTA TAAGTGATTCACTTCTTGAGGCAGCAGCTCCAGTTGTTTAGTAAACTATAGGATTTGCCTTGTAAGATGTGTGTTCATGT TTCTTTGAGCCTGATCAGCCTATTGTGCTGTCAACCGGTTTGTTCAACAAGCCCTGTTGAATTGAGCTTAACATAATTTA CTTGTTATAGGATTCGGATCCTCGCATGATTATGTGTGTAATATATATAATACTGGGGCTTCTTTATGCTCCTTTTTCTT TGTTATTCGTTAGTTTTGTTGAATCAAGAAAGAATTCCCCTATTCATGTTATGAAAAAATGGTTTCTGGTCACTTGGAAA CAATTTTAGCGGTTCAATATCAGATTTATCTTCTATCTTGTTTTGAGGTATCCATCCACTTTTTCAAGTAAGGAAATTGA TATTGTATCAAATTTGAAAATATTTCTAGCACAGAAAATATGTGAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0023100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCTTCCTCCTCCACCTTATCTCACTCCTCTGGCGAGATCCATCTTTTCGTCGGTCCCATGTTCGCCGGTAAAAC CACTTCCCTTCTCCGTCGCATCAAGTCTGAGGTTGACACTGGCAGGAATGTGGTCATGTTAAAATCAAGCAAGGATACAA GGTATGCAATTGACTCTGTTGTATCTCATGATGGTGTCAAGTTTCCTTGCTGGGCATTGCCAGATCTTATGTCTTTCAAA GAAAAGTATGGTCATGAGGCTTATCAAAAGTTGGATGTGATTGGTATAGACGAGGCTCAGTTTTTCGAGGATCTATATGA TTTTTGCTGCAAGGCTGCTGATGTTGATGGTAAAATTGTTGTTGTAGCAGGCCTAGATGGTGATTACTTGAGGAGAAGCT TTGGCTCAGTGCTTCACATAATACCACTTGCTGATACAGTGACCAAGTTAACAGCTCGTTGTGAACTATGTGGGAAACGT GCTTTCTTTACTTTGAGGAAAAAGATAGAAGAGACACAGACTGAACTAATTGGTGGTGCTGATCTCTACATGCCAGTTTG CCGCAATCATTACAAGAACAGTCAAGTTGTCATGGAAGCTGCAAGGAGTGTCCTTGATCTCAAAAAGTTATAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0023100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASSSSTLSHSSGEIHLFVGPMFAGKTTSLLRRIKSEVDTGRNVVMLKSSKDTRYAIDSVVSHDGVKFPCWALPDLMSFK EKYGHEAYQKLDVIGIDEAQFFEDLYDFCCKAADVDGKIVVVAGLDGDYLRRSFGSVLHIIPLADTVTKLTARCELCGKR AFFTLRKKIEETQTELIGGADLYMPVCRNHYKNSQVVMEAARSVLDLKKL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11441:SF4
5 209 205 5.2E-119 –
PANTHER
PTHR11441
5 209 205 5.2E-119
IPR001267
PIRSF
PIRSF035805
10 203 194 9.7E-61
IPR001267
Gene3D
G3DSA:3.40.50.300
11 150 140 8.9E-47 –
Pfam
PF00265
13 191 179 3.4E-53
IPR001267
SUPERFAMILY
SSF52540
13 151 139 1.29E-37
IPR027417
Gene3D
G3DSA:3.30.60.20
151 194 44 1.1E-14 –
SUPERFAMILY
SSF57716
151 194 44 9.98E-10 –
ProSitePatterns
PS00603
178 191 14 -
IPR020633

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004797
Molecular function Thymidine kinase activity Catalysis of the reaction: ATP + thymidine = ADP + thymidine 5'-phosphate.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0023100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…