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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0023400 |
| Transcript ID | LotjaGi6g1v0023400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 6,7-dimethyl-8-ribityllumazine synthase; TAIR: AT3G32930.1 6,7-dimethyl-8-ribityllumazine synthase; Swiss-Prot: sp|B4NP88|NO66_DROWI Bifunctional lysine-specific demethylase and histidyl-hydroxylase NO66; TrEMBL-Plants: tr|I3SBX6|I3SBX6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0023400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4354451..4357539) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAAGAAGTGCTCTGTCATGTCATCTTTCCCACAATACAAGCCAAGCCAAGCCAAGCCAATCCACCGTTGTTGTTGTC ACCGTCTCCACAAGAAATGCCTCTATTTTCTCTAGTTCAATTCACTTGTTGCGTTCACCAATCCACCACCACCACCCTTT TCAACTTCGATTCTTCTTCAACCTCAACGATCTTCCCCAGAACCCTTTTCCCTCCTTTCAGAACCACACCACCACCAACC TTTACCAGTAGTACAACTTCACTGCGCACAACACGCACCCGTGCCTCTTTGCTTGAAGCTCCTGTTCTCTGGGCTGGCAG GCTCTGCATCTTCTATGCTCTCCTCAAAGCTGGCTTGGCTGGATCTCCAGCTAACCCACTTGTCTCAGGTTAGTTTGCAT TTCCACTCTTGCTTTGTGTTGTGTAAATGTAATGAAGATTTATTTTAGTTTGCATTTTTTCAAGTTAGTGCTTTGCTTCA GATTTGGAAGTTGGTGATGGTGGCATAGCTGAATCTGCTGACTTGGGCTTCTCTAAATGGACCCAGGCCATACTAGGAAA ACCAGGTTTGCCAATTATGTTTTTCTTCTAACTTGTTTAGTAAAGTATGTGTTTTTGTCTGTTTCTGTATCCATTAGTCT ATTCCCCTCGTATGCTACAAATTAAATTTGCTCCATAATGCTTCTTCAGTCGGTCAATTATGCTTCGCAGTGGAGCTGGA ATATGCTATATATACATATTTGTTGGTCATCTGAGTGAGTGGTAATGGTGGATGGCATGGTCTGTGATCCCTTCTTGAAG ATACTCAAATCAGATATAATCTGACAAGATTAAAACTTTATTTGCTCGAGTCAGTGCATAATCTGCATGGGTTGGAAGAG CTAGTTGGTAGTGGCGTAAATTCCGGGAGGTTTTAGGCGCGAGAGAGTGTGGGGGAGCGAGGAGTCAGGTATGTGGTTTA GGTAGAGATGCTTGGTTGCCTGCAATGATTTCTTGGCTGTAGTAGTCATTAATCTGGCTTGATTCGATAAATAAAGACTA TCAGTTTCAGGTGTTTAATATATGGTTCCTGGCAAACTGAAAGTTAGAAGATCCTTAAATTGTGGGGTGCAATGGAAAAT GACTATCAGTGGTATTGCTTGATTGTGGGGCTTCAAGCAACTCTGAAGCTGCTGATTTGGTGCAATAATTGACTGTAGCC TATATTGGAAACTCCTGCCTATTATTTTGAAGTTGGAGATAGGAGTAAGTTAAAAAGTATGGGAGTTTGCCAAGGAATAG ATTTGCATCAAGTATGGAAATTCAACAGAGTTCTTCTTTTAATTTAGATGGGGCTGACTTAGTGTTATGAATTGATTCGC TGCCAAGCTTGGTGGAGATAAGGGTGGGAGTATAGGAGAAGATGCTAAGAGGTAAACCTCCATTGTCCAGATCTGTGGCA ACCTTCAAATTAGTGATGAAGGCTTTTTAAGAGGAAGGGCAAGGTTTCTGTGTTGGCTGCACTGCCATAAATAGTTTTTC TGCTTAGATTGGATTGATTTCAAAGGCTGTTAAGAGGCAATGGAAAATTTGAAGATTTTTAATAAATTCTGAACATTTGT TCCTTTTACACTAAAAGACAGGATAAAATCATTGATACTTGTACTAGCCTCTTGATTAAATACAGTGACAAAACATGAGG TATTGGAAGATATAGAAACTAATGTGCCATCTAAGATACCCTAAAATATGAAGGTAATGTCAATGTGTTTTGTTTGTTAC AATGTCTATTGTTTATTTCTGTTTGTTTTACTTGGGCAGCAAAGGAGGTAGCTAATGGAGGTAAATTTGTGAGCAAATGG CATCCTACAACAAAGGGTACACTTAGAAGGAACTACAGAGTCCGATCCAAGTCTGAGGGGCGACGTCTTCTTAAAGCCAT TGCATCTCTACTGTCAGATGATGACCACTTTGTTGATGCTACCTCTCACAAGGTTTGCGTTTTTCCTTTCAAATATCTGT TTTTTTATTTCATTTATGCTCTTTTCCAGGGGAGCCTTGGCGCAACGGTAAAAGTTGTTTCTATGTGACTGAGGTCATGG GGTTCAAGTTTTGGAAACAACCTGTTATGTTAAAAACAGGATATGGCTGTGTACAATAGATCAAGTGGTTGGACCCCTTC CCCGGACCCTGCACATAGCTGGAGCTTTAATTTATGCTCTTTCCCCATAATTTGAGACCACTTTAGTCTTTTTTCTCCAT GATTTGATGATATTTTCTTTTATTCTTTTTTTCCCCATGATTTGATTTAGTTTGATGCAAGAAATGGTTGACATTTATGC TGCTAAGTATCCATTGTAGGGTTGCCAAATCCGGAGGGAAAGTGCTCATGGAGAAAGTGTGTGTTGCAATAACGTGAGAG CTCTTTTCGATGAGCTCCCAACTCCTCATCTCACTGTGGAAATCACACCTTTTCCTGCTGGACCTCTTACTGATAAGGAT TACACTAAAGCTGAGAAGCTTGAGAGGGTTCTCAGATCTAGTCCTTCTGTTTGAGCTGGCTATGGTGTCTAATGCTTTCA TGTACATATTTATGCTAGATTGTAAATATTGGCATGATGACATGAGTTTGTATTTCTTCAACTAACCTTTTTCATTTGAG TTGAATCATAATTTCACCTTTCAAAGACATTGCCTCTTCCCTTATTTTGAAAGAAACAGTAAACATTGGACATTAGATCA TATCCGTTGTTACCCTTCATTTGAATTATCTCTAACTATCTTTTTTTTTCTTTTACTTTGTTATATATGATTTCTGACAT ATCAATTAGCCCAACAAGGACTGTTTCCTTAAGGAAAATTCTTACTAGACAATTTTATTTTTAAAATCTCAAAAAATATA TTATATATATTTTTTTGTCTTGACTAAGGTATCCCCACAGCTGGTGGCTGTGAGGTTAATCTTTCTCTCACGGTCAGCGC ACTAAGTGGTAGGGGCTGACCAATGAGTTTTTCCATTCACAAGAGTTTGGAATCAAAGCCCCTTAAATGATGGAATACTG AACCATTACGTCAACCATATAGGTTGGGAAATCAGCTTTTCTTGTTTGG
CDS sequence (LotjaGi6g1v0023400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCTATTTTCTCTAGTTCAATTCACTTGTTGCGTTCACCAATCCACCACCACCACCCTTTTCAACTTCGATTCTTC TTCAACCTCAACGATCTTCCCCAGAACCCTTTTCCCTCCTTTCAGAACCACACCACCACCAACCTTTACCAGTAGTACAA CTTCACTGCGCACAACACGCACCCGTGCCTCTTTGCTTGAAGCTCCTGTTCTCTGGGCTGGCAGGCTCTGCATCTTCTAT GCTCTCCTCAAAGCTGGCTTGGCTGGATCTCCAGCTAACCCACTTGTCTCAGATTTGGAAGTTGGTGATGGTGGCATAGC TGAATCTGCTGACTTGGGCTTCTCTAAATGGACCCAGGCCATACTAGGAAAACCAGCAAAGGAGGTAGCTAATGGAGGTA AATTTGTGAGCAAATGGCATCCTACAACAAAGGGTACACTTAGAAGGAACTACAGAGTCCGATCCAAGTCTGAGGGGCGA CGTCTTCTTAAAGCCATTGCATCTCTACTGTCAGATGATGACCACTTTGTTGATGCTACCTCTCACAAGGGTTGCCAAAT CCGGAGGGAAAGTGCTCATGGAGAAAGTGTGTGTTGCAATAACGTGAGAGCTCTTTTCGATGAGCTCCCAACTCCTCATC TCACTGTGGAAATCACACCTTTTCCTGCTGGACCTCTTACTGATAAGGATTACACTAAAGCTGAGAAGCTTGAGAGGGTT CTCAGATCTAGTCCTTCTGTTTGA
Protein sequence (LotjaGi6g1v0023400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPLFSLVQFTCCVHQSTTTTLFNFDSSSTSTIFPRTLFPPFRTTPPPTFTSSTTSLRTTRTRASLLEAPVLWAGRLCIFY ALLKAGLAGSPANPLVSDLEVGDGGIAESADLGFSKWTQAILGKPAKEVANGGKFVSKWHPTTKGTLRRNYRVRSKSEGR RLLKAIASLLSDDDHFVDATSHKGCQIRRESAHGESVCCNNVRALFDELPTPHLTVEITPFPAGPLTDKDYTKAEKLERV LRSSPSV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 15 | 15 | - | – | |
| Phobius | 3 | 13 | 11 | - | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| PANTHER | 15 | 247 | 233 | 2.0E-116 | – | |
| Phobius | 19 | 247 | 229 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0023400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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