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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0025000 |
| Transcript ID | LotjaGi6g1v0025000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT1G42190.1 GAG/POL/ENV polyprotein; Swiss-Prot: sp|Q99315|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr|A0A1B5Z7G4|A0A1B5Z7G4_TRISU Uncharacterized protein; Found in the gene: LotjaGi6g1v0025000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4515779..4518417) extracted from Lotus japonicus Gifu genome v1.2.
CTATCTGGGAGGATATATCCCTTGACTTTATCACAGGGTTACCTAAATCTAAAGGCTTTGAGGCAATCTTGGTTGTAGTG GATAGGCTATCCAAGTACAGCCATTTCATCTTGCTTAAACACCCCTACACTGCTAAGTCCATTGCTGAGGTCTTTGTCAG GGAAATAGTAAGGCTCCATGGGATTCCAAGCACTGTTATCAGTGATAGAGACCCAATTTTTGTGAGTCACTTCTGGTCTG AGCTATTCAAATTACAGGGTACCAAGTTGAAAATGAGCTCCTCCTACCACCCTGAGACTGATGGCCAGACAGAGGTCATA AACAGGTGCTTAGAGAGTTATTTGAGATGCTTTGCCTCTGAGCATCCGAGGACTTGGTCTTATTGGGTTCCTTGGGCTGA GTTTTGGTATAATTCTACCTTTCATTGCTCCATTGGCCAAACTCCTTTTGAGGTGGTTTATGGCAGAAAAGCACCTCCCA TCATCAGGTTTCTAGCTAATGAGACCAAGGTAGCAGCTGTTGCTCTAGAATTAAGTGAGAGAGATGAGGCTTTGAAGCAA CTGAGAGCACATTTATAGCGAGCACAGGAGCAGATGGTCAGTTATGCTAATAAGAAGAGAAGGGATTTGAGCTTTGACAT AGGAGAATGGGTCTTCCTCAAGCTCAGGCCCCACAGGCAGCATTCTGTTGTCAAGAGAATTAATCAAAAACTAGCAGCAA GGTTCTATGGCCCTTTTCAAATTGAAGACAAAATTGGAGCTGTTGCTTACAAGCTCAAACTACCAGCAGAATCAAGAATC CACCCTGTCTTCCATGTGTCTCTTTTAAAAAAGGCTATAGGCAATTACCAAGTCCAAGGGGAGCTGCCTACTGATTTAGA TATTGGGGAAACTCCTGACTTTTATCCTGAGGAGATTCTGGGCACCAGAAGTATCAGGCAAGGTGACAGAGAGGTTCACC AAAGTTTGATTAAGTGGACCAACAGATCAGTGGATGATGTCACTTGGGAGGATAATGAGGTCTTAGTTGGTCAATTTCCA GACTTCTGCCTTGAGGACAAGGCTGTTTCTAAGGGGGAGGGAATTGATAGAGACTCGAACACAAAAGGGGAAATGGGCTT AGGAAAGCCCAAGGTGTGGAAAGTTTATGAAAGAAAGAAAGGGAAAGGTGCTGAGGTGTCTCAGGCAAAATGGAGAGGAG GGAGTTAGTTAGTAAGTTAGTATATAGAGTAGTGAGGTGTGGGGTGAGAGGGCACTGATGAATATCAAATTCGGTTATAG GAGAGAGAAAGAGGAATCTTTCTAGGGAGAGAGCCATTAGAGCCTCTCTGGGTTGTTAGAGCTTTCTCTAACAATACACC ATCTATCTTTTTCTATTCCTGTATTACTCCTTACCTTCATCAATATAATTCTCATTTCAGTATTAATCTTCTCTGTTCTT CACTTGCACAATTTACATACCTATCACTTTCCTTGCAATTATTTTTGTTGCTTTCATTTTTAACATTTTGGGAGTGGATC ATGTTTTTTTTCTTTTATATATATATGTGTGTGTGTGTGCTCTGCTTATTGTTTCTTTCTCAGATATATTACCTCTGTTT GTAGATTAGTTATTTCAGATTTACGTGTATGTATCTTTTGCTGTTTTTGTTTTGGATCTTTGCTTCAAATCACTTTTGCC ACCTTAGTGTAAACTATCATTGATCAGAGATATTGTCAAAATTATCCTTTAGAGCATTCTTCACTTAGAGCTGACAGTTG ATTAATCCGTGGGTCACCCCCCTGCAAATTGCACATGTAGGGGATGGGAAGTGAGGGATTTTAATTCTTATTATCTTTGT CCAAGACAGGGGAGGCGAGGGGAAATAACTCGTTTCTGTTTGGTTAGGGGATTGGAGGGATTTTAAAACTAATTTGCATT AGCTACCCTCACTTCAGAAGATTTTAAAACTTAGTAGGGACATTTATGTATAATGAAATAATTCCCCTCCAATTCCTCCA CTTTTGGAGGGAAGACAAAATTGAGGTATGAGGGATTTTGTCCCCCATCATTCCCCTCCCCTCCTAAAAATTGAACCAAA CAAGATAAGTGTAAATGTCTCTTGTGACTTATGAGGGGTGCTTTAAGTGTTAACGGTTGAAGTTCCACATTGACTAAAGA CATGACCCAAATAGTCCTTATAAATGGTAGATCAATCCTCACTAGGAACTAGTTTTTTAGGTAGAGTCGCTGAACACTAA GAAGTAGGTAAGTTGACTGTGGCTTAGGTTATGCTTTTCTTCATGGTCTGTATTTTGAATTTTTTGAAGTGACCAATGAT TGATGTTCTGCAGTCCTCGTCCGCTTTCACCGGATAAGCTTGCGCATGATGCTGCTTGCAGCTGAAATTAGAGCACGCTA TGGAGGTGGAGGTGCCATGGCAAGAGAGAAGGCTGACACTGCTTGATTTCTACCATTATGTGAAGTAAATGCTTGTGAAG CTGACTATGGTTTGTGATCTGTTCGGTTTAGTTTGATTTGTGTTTAGCAGTATATTATAAATATTTTAATCGTGTTTTGA TGGTGCTACTTGTATTGCTATAACCGTGTAAGCATTAAGCATACTATACTATAAACCATACTTCTAATGTTTGGAAGTT
CDS sequence (LotjaGi6g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTCAGTTATGCTAATAAGAAGAGAAGGGATTTGAGCTTTGACATAGGAGAATGGGTCTTCCTCAAGCTCAGGCCCCA CAGGCAGCATTCTGTTGTCAAGAGAATTAATCAAAAACTAGCAGCAAGGTTCTATGGCCCTTTTCAAATTGAAGACAAAA TTGGAGCTGTTGCTTACAAGCTCAAACTACCAGCAGAATCAAGAATCCACCCTGTCTTCCATGTGTCTCTTTTAAAAAAG GCTATAGGCAATTACCAAGTCCAAGGGGAGCTGCCTACTGATTTAGATATTGGGGAAACTCCTGACTTTTATCCTGAGGA GATTCTGGGCACCAGAAGTATCAGGCAAGGTGACAGAGAGGTTCACCAAAGTTTGATTAAGTGGACCAACAGATCAGTGG ATGATGTCACTTGGGAGGATAATGAGGTCTTAGTTGGTCAATTTCCAGACTTCTGCCTTGAGGACAAGGCTGTTTCTAAG GGGGAGGGAATTGATAGAGACTCGAACACAAAAGGGGAAATGGGCTTAGGAAAGCCCAAGGTGTGGAAAGTTTATGAAAG AAAGAAAGGGAAAGGTGCTGAGGTGTCTCAGGCAAAATGGAGAGGAGGGAGTTAG
Protein sequence (LotjaGi6g1v0025000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSYANKKRRDLSFDIGEWVFLKLRPHRQHSVVKRINQKLAARFYGPFQIEDKIGAVAYKLKLPAESRIHPVFHVSLLKK AIGNYQVQGELPTDLDIGETPDFYPEEILGTRSIRQGDREVHQSLIKWTNRSVDDVTWEDNEVLVGQFPDFCLEDKAVSK GEGIDRDSNTKGEMGLGKPKVWKVYERKKGKGAEVSQAKWRGGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 19 | 158 | 140 | 9.6E-46 | – | |
| PANTHER | 19 | 158 | 140 | 9.6E-46 | – | |
| SUPERFAMILY | 68 | 147 | 80 | 2.75E-10 | ||
| CDD | 105 | 153 | 49 | 3.46796E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0025000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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