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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0028100 |
| Transcript ID | LotjaGi6g1v0028100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein 3; TAIR: AT1G79480.1 Carbohydrate-binding X8 domain superfamily protein; Swiss-Prot: sp|Q9FZ86|PDCB3_ARATH PLASMODESMATA CALLOSE-BINDING PROTEIN 3; TrEMBL-Plants: tr|K7N1B6|K7N1B6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0028100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:5047392..5049564) extracted from Lotus japonicus Gifu genome v1.2.
CAATAAGCCACTACTCTCCTTTATCCTTTTGGCATATTGCTATTCTGCTTTTTTAGATGTGACAAAGTGATAGCAACTAA ATTAAAGTGACAATAGAATCAACTTTTGTTTATAGGAATAGGATTATATTCATGGCTTCTCACTTTACGGCTCCCAATTC TACTTATATATAATTCTGTCTCTTGTTCTAGCTTCTCCCTGGTTCAACCTCTGAAAATTTGGGATTTCATGTCCAATGGA TCTAAGAGTTTACATCCTCAGAGTCAGCATCATAGTGCTAGCTTCCACTCTTTTCCCTCTGTGTGGTAAAGTATACAACA CACAAACATAATGTGGGTTAGCACAACATTAATTTTCCCATGGTTTCTATAAATTTTTAATTACTTGTTCTGTTAATTTG CAGATGCTGCACATCATGGAAGAGCTATAGAGGGTGGTCACAAATTTTATAGAAGCTCAACAATGAAATCATGGAGGAAG CTAAAATCTTTAAGCTTTTTTAACAAGTACACATCATTTGGGTACTCAGATTCTGATTCATATGGCTCTCCTTCTTCTCT ACCCCTACCAACTTTCAATTCACTAGCACCACAACCTACACCATCATCTTATGGTGCCTCTTCTCCAAACATACCCACAG TTAGCAACCCCTCTCTGCCACCCTATTCTCTTGTTCCAAGCCCACCACATAGCCAAAGCCCAACAAAACAAGGCCCAAGC CCACCTAAGAGTGTTCCAATTCCAAGCCCACCACAGGTGTACCTGCCACCTATGGTGTACCCACCTCCACCCTCCCCTCC TGGGCCCCATAAAAAGGGACCACAGAGTGGTGTTTGGTGTGTAGCAAAACCTACAGTTCCTGATCCAATAGTCCAGGTGG CCATGGATTATGCTTGTGGGTCTGGTGCAGATTGCAAATTAGTTCAGCCCAATGGGCCATGCTTTCAGCCCAACACTGTG TTGGCCCATGCTTCTTATGCTTTTAATAGCTATTTTCAGAACACCAAGAATGGTGGAGGCACTTGTGATTTTGGTGGTAC TGCAATGCTCGTCACAGTTGATCCAAGTAAGTGTGTTGCTAGCTTTTGATGATTTACATGAATTCGAACAGAAAAAAAAA AGATTTATATGAAAAAATTTGAACTGTAGGATAAGAAATAGAGACATAAGCACTACCAAAAAAAGAAATAGAGACATAAA TCACATAATTTGAGGATAATAAATCTTGATTCCTCTGACTATATGGTTCAATGAAAAAACACAATTTATTATTGATTTCT ATAAATTTAACTAATGATAAGTACAACTTTTATTAATTTACTTATTTAAAATATATATTGCAAAAATGATGACCGAAATG GTGTCATAAATTAAAGTTAAATGAGGACTGATTAGTTCAAATTAACATTGTTTTCATATTCATTTTCCCCCATGAGTCTT TACTTGTATTATAATTGTTGTGCCCATAATTTACACCTACGGGCTACTGCTAGATACATAAATTTTCTCAAATACACGAT TTTTCTTTGCAGGCAATGACAAATGTAAATTCATGCTGAATTAGCTAATTCTGTCGAACACAATCGACGTGTGTGTGGTA GATATAGAAATCTTTCTGAAACTTAATTTTTTTATGTGTATGCATAATCTCCATGTTATGTGTACCCATAGAATAGCTTA AGTGGTAGGAGCTGGGGAACATATAAGTTGGGTAGGGGCAGGTCCAGTGATTGATTCCTGGTAGGTGCAATTTATCTTTC CGATGTAAAAAAAATAATCTTCATGTTAAGAGACATTATTGGAGTTATGATAGTCGTTATTTTCCTTTACCTTAGGATCG GAATGTTGTAGCGGTTTAGATATCTGTATACTTTTTGTTATAAGTTCATTTATTGTGTCTATTTAGTACTCTTTCCGTCC TTAATTATAAGCTAAAGTTGTAAAAATCACGCTTATTAAGAAAGATTTAATTGATGCATTGGTTTTTGAAAAAAATGTAT AACTTTTTATATTTACCCCTATTTAAGATAGAACTTTTTAATTATTATACCATGAATAATGCTTCACTACCAATAAATGC AAGGGTAAATATGGAAATAAATATTATCTTTTACAATTTTAGCTTATATTTAGTGACAAAACATAAGTTTCAACTTTAGC TTATAATTAGGGA
CDS sequence (LotjaGi6g1v0028100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCTAAGAGTTTACATCCTCAGAGTCAGCATCATAGTGCTAGCTTCCACTCTTTTCCCTCTGTGTGATGCTGCACA TCATGGAAGAGCTATAGAGGGTGGTCACAAATTTTATAGAAGCTCAACAATGAAATCATGGAGGAAGCTAAAATCTTTAA GCTTTTTTAACAAGTACACATCATTTGGGTACTCAGATTCTGATTCATATGGCTCTCCTTCTTCTCTACCCCTACCAACT TTCAATTCACTAGCACCACAACCTACACCATCATCTTATGGTGCCTCTTCTCCAAACATACCCACAGTTAGCAACCCCTC TCTGCCACCCTATTCTCTTGTTCCAAGCCCACCACATAGCCAAAGCCCAACAAAACAAGGCCCAAGCCCACCTAAGAGTG TTCCAATTCCAAGCCCACCACAGGTGTACCTGCCACCTATGGTGTACCCACCTCCACCCTCCCCTCCTGGGCCCCATAAA AAGGGACCACAGAGTGGTGTTTGGTGTGTAGCAAAACCTACAGTTCCTGATCCAATAGTCCAGGTGGCCATGGATTATGC TTGTGGGTCTGGTGCAGATTGCAAATTAGTTCAGCCCAATGGGCCATGCTTTCAGCCCAACACTGTGTTGGCCCATGCTT CTTATGCTTTTAATAGCTATTTTCAGAACACCAAGAATGGTGGAGGCACTTGTGATTTTGGTGGTACTGCAATGCTCGTC ACAGTTGATCCAAGCAATGACAAATGTAAATTCATGCTGAATTAG
Protein sequence (LotjaGi6g1v0028100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLRVYILRVSIIVLASTLFPLCDAAHHGRAIEGGHKFYRSSTMKSWRKLKSLSFFNKYTSFGYSDSDSYGSPSSLPLPT FNSLAPQPTPSSYGASSPNIPTVSNPSLPPYSLVPSPPHSQSPTKQGPSPPKSVPIPSPPQVYLPPMVYPPPPSPPGPHK KGPQSGVWCVAKPTVPDPIVQVAMDYACGSGADCKLVQPNGPCFQPNTVLAHASYAFNSYFQNTKNGGGTCDFGGTAMLV TVDPSNDKCKFMLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| PANTHER | 10 | 93 | 84 | 3.2E-72 | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| PANTHER | 10 | 93 | 84 | 3.2E-72 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 254 | 229 | - | – | |
| PRINTS | 74 | 90 | 17 | 1.1E-10 | – | |
| MobiDBLite | 81 | 163 | 83 | - | – | |
| MobiDBLite | 81 | 102 | 22 | - | – | |
| MobiDBLite | 103 | 160 | 58 | - | – | |
| PRINTS | 106 | 118 | 13 | 1.1E-10 | – | |
| PRINTS | 119 | 140 | 22 | 1.1E-10 | – | |
| PANTHER | 133 | 252 | 120 | 3.2E-72 | – | |
| PANTHER | 133 | 252 | 120 | 3.2E-72 | – | |
| PRINTS | 140 | 156 | 17 | 1.1E-10 | – | |
| SMART | 167 | 251 | 85 | 1.3E-45 | ||
| Pfam | 168 | 238 | 71 | 1.9E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0028100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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