Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0032600.1

Overview

Field Value
Gene ID LotjaGi6g1v0032600
Transcript ID LotjaGi6g1v0032600.1
Lotus japonicus genome version Gifu v1.2
Description Endoglucanase; TAIR: AT4G02290.1 glycosyl hydrolase 9B13; Swiss-Prot: sp|P05522|GUN1_PERAE Endoglucanase 1; TrEMBL-Plants: tr|I1MZ56|I1MZ56_SOYBN Endoglucanase; Found in the gene: LotjaGi6g1v0032600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:6113336..6117096) extracted from Lotus japonicus Gifu genome v1.2.

CAACATCCCAACTTCCTACTTCTCCTTCTATATAAATGCAATCCATTTTCATGTTATAAACCAACCATCACTCTATCCCC TGAAGCTTCTAACTCTGCTACGAGTAAACCAAAACAACCTTCTCACATGACAAAACTGATGATGGATTCAGCCACCACAT TTTCACTGAAGCCACTCTTTCTTTTCTTCTTAATCTATTGTTCATTATTCAATCAACTGAGCTTTGCTTTCACTTCTGAA GAGTACAATGAGGCTCTTGAAAAATCCATTCTCTTCTTTGAAGGGCAAAGGTCTGGGAAATTGCCTTCCGACCAGCGCCA AACATGGAGGGGTGATTCAGCATTGTCCGATGGCTCTTCCTATCATGTACATGAAATTTAAACTAAATCTCAAATGCCTT ATTCTGATTTATTATAATATGTGTGCAAAACCGATTTTAAATTGTGGTTGCGGTTGCCGCTGCGTTATGGAATTGCACAG GTTGATGCGGCTGCAATTGCGGTCACGATGTTGTTGTGTGAATTCCAAATATTCCTTTGTGTCGTCGCCACAATTTGCAA TTGCAGACAGAATTTTTTTTTTTTTGAAATTGATTGTGGACAGAAATTTAAAACCTAGAGTTGGATTTTTTGCATTCACA ATTTCACTAACAGTGTCTAATCTTTGTACAGGTGGACCTAGTTGGTGGTTATTATGATGCTGGGGACAATGTTAAGTTTG GGCTCCCAATGGCTTTTACCACAACCTTATTAGCTTGGAGTGTCATTGAATTTGGAAGCTCAATGCAAAACCAGATTGAA AATGCTAGAGCTGCTATCCGGTGGAGCACGGATTATCTTCTTAAGGCAGCAACCACCACCCCAGATACGTTATATGTTCA AGTGAGCAATCATAACTGACGACACAATTGATTGCTTTTGATATCAATTGATTGCTTATTATTCCATAACATCGCATATG AACCGCTAGCATAACGTAAAACCATGAAAAAAAATTGGTAGAAAATGAACAACTAATTGTGTTGTGCTCCACTGGAGCAG TGCTACTAACAAAAGATTGGTTCAAGCGTGGTGCATACTGAATTCCCAATTAAGTATGGTCTGAGTTTGAGTTGTGTGTG TAAAAAAATACATCGGCTCAAAGAGTTAGAAATATTGATTTAGTTTCTTACTTAGGTGGTTAGTTAGTTAGTGATCTGGT TACTAGTTTATTACTTTGCTTATGCTAACCTCCTCTTGTATAAATAACAATCACATTGTATCATTTCAGAATCTTTTTCA ATTATAATCACGCATATCTCATGGTCCACCCTCCCTCACTTAAATTCAGACTATTTCTCGTGTACCCATTTAAAATTAAG AGAGATTTTGTACCTTTTTGCATAAACGTGTCATATTCTCTCATGTAATAATCTTTCTTAATTTACAATCTAGTCCTAAT AAGAGATTGAATGGTGTTGAACCCTCTATTTTTATAAGGGTACAAAAGCAATGCACTTAAGTAAAATGAAATATAATGTG GGAAAATGATGTGCATCTCCATTTCTCCCCAATAAGTAATAACTTCCAAGAGTTAAGAAGATTATGGCTTGTTGTAGGTA GGAGACCCAAACTTGGATCACAAGTGTTGGGAAAGGCCTGAAGATATGGACACTCCGCGCAGCGTCTACAAGGTATCAGC TAAAAATCCAGGTTCAGATGTAGCAGCAGAGACAGCAGCTGCATTGGCAGCTTCTTCAATAGTGTTCAGAGACTCAGACC CAAGCTATTCCTCCAAATTGCTTGAAGCAGCCATCAATGTAGTAAAAAAAATAAAAACTGCTTATTAACTCTGACTTTTG CCCTGTTTTCATTGCATTTCTAATGGCAATTCAACCTTGCAGGTATTCAATTTTGCAGACCGTTACAGGGGCTCTTACAG TGACTCTCTTAATTCAGTTGTTTGTCCATTCTACTGCTCTTACTCTGGATACCATGTGATTAACACCATACCATACCTTA AATTTGCACTTTTGAAATAAATTTGTGCATGTTTGGATACACTATAGGAAACCACTATTACAAAAGCGACTTCCCTTTGT TTTTGCTTCTATACACTATAATTTTGACATCATCTTAGTTTTCTAGCGTGTATCCAACATGTACTTAATCATGTGCATTT GTTCTGATATTGCAATTGTTGTAAACAGGATGAACTTCTTTGGGGTGCATCATGGATTTATAAAGCCTCTGGAATCAACT CGTACTTGCAATTTATACATTCCAATGGGCACACATTAGGTGCTGATGATGATGTTTACTCATTCAGTTGGGATGATAAA CGAGCTGGAACGAAAATCCTGCTTTCGAAGGTACCCTTTTAGCTCTGTTTTGTGTACTTGGACTCAAATTCAATGCTAGC TATTATTGCACATCCCATAATAAGGGTCTGTTTTGTATGACAGGAATTCTTGGAGAAAAATTCTGAAGAGTTTGAATTGT ATAAGGCACATGCTGATAATTACATATGCTCGCTAATGCCGGGAATTCCTGGTTATCAGGCTCAATACACCCCAGGTCAG AAATCCGAATTCCTTATTCAGAAGGCCATACGGAAAAAGTTTAAACATTTTAGTAAAATTTTACTCAACTTTACAAAAAA AAATTAAGTCTTGCTTCACTGTCATTCAGTTAAAAGTAATTGCGCTCTAGTGTCTGATCATCCTTCCGATTTTATCTTAT CAATCAAATTGTGTCATGTCACTAAAATTCACCATTGTATAAATATAATTGTTATACTTGTGTCTATATGACATAATTTG ATTGGTGACACGCAAAAGACAACTCCAAAGACAGAGATCTTCCTCTTGGAATAAAAGATTACATAACCGTGAAAATAATT TAAGAGACCTAAAGCTAACTCAAGAATTGAGCATTGCTGCACCGGACTATCTATCTGTAGCTAATGCAAGACTTCTTTTG GCAGGGGGTCTTCTATACAAAGGTAGTGAGAGCAATTTGCAGTATGTCACAACAACAGCCTTCCTTCTCTTAACATACGC CAACTATCTCAACTCAAATGGAGGCACCCCCGTCTCATGCGGTACTTCAAGAGTCACAGAACAGAACCTGATCTCACTCG CCAAAACTCAAGTGGATTATATTTTAGGCAACAACCCAAGAAAGATGTCTTACATGGTGGATTTCGGTGAGAATTACCCA AAGCACGTCCATCACAGGGGTTCCTCACTGCCTTCCAAACACACGCAGCCACAACACATTTCATGTAACGATGGGTTTCA GTATCTGAGCTCAGGCTCAGCCAATCCGAATACCCTGGTTGGAGCCATTGTTGGTGGTCCTGATAGTCATGACAGTTTCT CTGATGATCGAAATAACTACCAACAGTCTGAGCCTGCGACGTATATTAATGCTCCGTTTGTTGGGGCTGTTGCTTTTTTC GCTGGGAAAAGCTATGTTTAGTTCAAAGAATGTGACTATGTTTAGTTTAGTTTAATTAGGTCCAAGTTACTTTAAGCAAA GTGTCAAAAAAAAGTTACTTTAAGGCTTAAGCAATGTACTAGTTTCCATCAAGGGGCATATGGTTGGTTAGTGAAGAATT GGTTCCTCTCTGTCACGCCCAACGGTGTGCGTGTAATACTTCCATGTGTAATTCATTTGTTAAATTAATTTGGAAGTTTC TATACTGTGTAAATTTTTAATTAATTTAGAGCTAGAGAAACAATTTTATTTTAACGGTTCCTGCAATATATTAAACGGGG G
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0032600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACAAAACTGATGATGGATTCAGCCACCACATTTTCACTGAAGCCACTCTTTCTTTTCTTCTTAATCTATTGTTCATT ATTCAATCAACTGAGCTTTGCTTTCACTTCTGAAGAGTACAATGAGGCTCTTGAAAAATCCATTCTCTTCTTTGAAGGGC AAAGGTCTGGGAAATTGCCTTCCGACCAGCGCCAAACATGGAGGGGTGATTCAGCATTGTCCGATGGCTCTTCCTATCAT GTGGACCTAGTTGGTGGTTATTATGATGCTGGGGACAATGTTAAGTTTGGGCTCCCAATGGCTTTTACCACAACCTTATT AGCTTGGAGTGTCATTGAATTTGGAAGCTCAATGCAAAACCAGATTGAAAATGCTAGAGCTGCTATCCGGTGGAGCACGG ATTATCTTCTTAAGGCAGCAACCACCACCCCAGATACGTTATATGTTCAAGTAGGAGACCCAAACTTGGATCACAAGTGT TGGGAAAGGCCTGAAGATATGGACACTCCGCGCAGCGTCTACAAGGTATCAGCTAAAAATCCAGGTTCAGATGTAGCAGC AGAGACAGCAGCTGCATTGGCAGCTTCTTCAATAGTGTTCAGAGACTCAGACCCAAGCTATTCCTCCAAATTGCTTGAAG CAGCCATCAATGTATTCAATTTTGCAGACCGTTACAGGGGCTCTTACAGTGACTCTCTTAATTCAGTTGTTTGTCCATTC TACTGCTCTTACTCTGGATACCATGATGAACTTCTTTGGGGTGCATCATGGATTTATAAAGCCTCTGGAATCAACTCGTA CTTGCAATTTATACATTCCAATGGGCACACATTAGGTGCTGATGATGATGTTTACTCATTCAGTTGGGATGATAAACGAG CTGGAACGAAAATCCTGCTTTCGAAGGAATTCTTGGAGAAAAATTCTGAAGAGTTTGAATTGTATAAGGCACATGCTGAT AATTACATATGCTCGCTAATGCCGGGAATTCCTGGTTATCAGGCTCAATACACCCCAGGGGGTCTTCTATACAAAGGTAG TGAGAGCAATTTGCAGTATGTCACAACAACAGCCTTCCTTCTCTTAACATACGCCAACTATCTCAACTCAAATGGAGGCA CCCCCGTCTCATGCGGTACTTCAAGAGTCACAGAACAGAACCTGATCTCACTCGCCAAAACTCAAGTGGATTATATTTTA GGCAACAACCCAAGAAAGATGTCTTACATGGTGGATTTCGGTGAGAATTACCCAAAGCACGTCCATCACAGGGGTTCCTC ACTGCCTTCCAAACACACGCAGCCACAACACATTTCATGTAACGATGGGTTTCAGTATCTGAGCTCAGGCTCAGCCAATC CGAATACCCTGGTTGGAGCCATTGTTGGTGGTCCTGATAGTCATGACAGTTTCTCTGATGATCGAAATAACTACCAACAG TCTGAGCCTGCGACGTATATTAATGCTCCGTTTGTTGGGGCTGTTGCTTTTTTCGCTGGGAAAAGCTATGTTTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0032600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTKLMMDSATTFSLKPLFLFFLIYCSLFNQLSFAFTSEEYNEALEKSILFFEGQRSGKLPSDQRQTWRGDSALSDGSSYH VDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGSSMQNQIENARAAIRWSTDYLLKAATTTPDTLYVQVGDPNLDHKC WERPEDMDTPRSVYKVSAKNPGSDVAAETAAALAASSIVFRDSDPSYSSKLLEAAINVFNFADRYRGSYSDSLNSVVCPF YCSYSGYHDELLWGASWIYKASGINSYLQFIHSNGHTLGADDDVYSFSWDDKRAGTKILLSKEFLEKNSEEFELYKAHAD NYICSLMPGIPGYQAQYTPGGLLYKGSESNLQYVTTTAFLLLTYANYLNSNGGTPVSCGTSRVTEQNLISLAKTQVDYIL GNNPRKMSYMVDFGENYPKHVHHRGSSLPSKHTQPQHISCNDGFQYLSSGSANPNTLVGAIVGGPDSHDSFSDDRNNYQQ SEPATYINAPFVGAVAFFAGKSYV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 16 16 - –
Phobius
SIGNAL_PEPTIDE
1 34 34 - –
TMHMM
TMhelix
12 34 23 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
17 28 12 - –
PANTHER
PTHR22298
21 501 481 2.4E-254 –
PANTHER
PTHR22298:SF106
21 501 481 2.4E-254 –
Phobius
SIGNAL_PEPTIDE_C_REGION
29 34 6 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
35 504 470 - –
Gene3D
G3DSA:1.50.10.10
35 503 469 2.4E-170
IPR012341
SUPERFAMILY
SSF48208
38 500 463 2.82E-159
IPR008928
Pfam
PF00759
40 494 455 1.2E-142
IPR001701
ProSitePatterns
PS00698
471 489 19 -
IPR033126

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004553
Molecular function Hydrolase activity, hydrolyzing O-glycosyl compounds Catalysis of the hydrolysis of any O-glycosyl bond.
Subterm of
GO:0005975
Biological process Carbohydrate metabolic process The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0032600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…