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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0035000 |
| Transcript ID | LotjaGi6g1v0035000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DCD (Development and cell death) domain protein; TAIR: AT5G42050.1 DCD (Development and Cell Death) domain protein; Swiss-Prot: sp|P37707|B2_DAUCA B2 protein; TrEMBL-Plants: tr|I3S9T3|I3S9T3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0035000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:6570954..6574530) extracted from Lotus japonicus Gifu genome v1.2.
CATATTTAAAATAAAAGTTAAATTAATACTAATACATATTTTTACTCACTTTGGTTGCATCTATTTCCGTCCATCAAATC ACGAGGAGCCATTTCAAAGTTTGACAATTAAACACGCAATACCCCCCTCTTCCCTTTCAACTTTCCAGGAAGCTTCATAC CCATTGATTCATCCATCTTTATTTAACACTAAACCCCCTTTCTCAACATCTCACTCTTCTCTTCATTCTTCTCTCTTCAC ATCAATTAGACACTGTTCTCGCGAATTTGCTACCAAAAACTTGTTTATTCGCAGCTAAACTGCTACCATGGACAACAACA ACAGCAATGAGCAATCGTTTTGGCAATTCAGTGACCAGCTTAGGGTTCAAGCATCTGGTTTAGCAAATCTGTCACTGAAT GATTCAATTTGGAGCAACAATTACACTTCCAAGAGACCTGATCAGAGAAGAAACTTTGATGCAAGTGGTGTTAATGGTGT TGTTGATCATCATCATCATCATGTTAACAACAACTCCTTCACCAACTTCATCTCAAAACCTAACTCTGATTTCAATGATG GTGGCTGGAAGATGATGAACACTTCTTCCAATTCCAGTAATGGGTCCCTTTTCTCCATGCCTCACAACAACAACATCATC ACCAACAAGGGGATTTACTCCAACACCAACATCAACCTTGACATGAATAATAATCTCAAGGGTTACAAATCTGGGTTTAA TTTTAAGGGTGGTGATGAGTTTTACCCACCCAAAAGTGCAAGGAAGAACACCAATAATCACAACAACAGCAGCTACAAGC ATGGGGACAACAACAATAGTGATGTGACCAAAACTGGGGCTGAGAAGAGGTTCAAAACGCTGCCACAGTCGGAGTCTCTA CCTAGGAATGAAACTGTTGGAGGCTATATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCAGAAGACAGCTTTT TGGTGAGTTCCCTCTTTCCTTTGTTGTTTGTTGCTTTAATCTGATTTTTTATTCTTTTTATCTGCTTCCTAGCTATGTGA ATTTCAATCAGTTTTATATTTGTGGAGCCTTAGGTTTTACAGTAGTAATAGATTGATAGCATGTTTGGATTTGCTTATAT TTTGTATCCAGAACTAGATTCTCCTTAAAATTGATTTTGACTTTAGAATTAATTATAGAAGACTTTCCAAATATGACTGA ATCTTCCTACTTCCTAGCTATGTGAAATTTTATAACAACAGTTTCAGAGTTTATGTTTTAAATTTATTTTATATCTGTGG AGTGAGATTTTACAGCAATAGTGATAGCTTATCAGCTTTTTTTTTTCATAGAATCAATTCTGGCACTCAAAAGCTATTCA CATAAGTTTATTTGCATATTTGAATTTGACTTCAGAATCAGTAGTAGTAGAATTTTTAAATATACAATAAATTGGAATCA ATTATTTGATCAATTTAGCTATACATAAGCTTCTTTTGAGTAATCAATTATCATTAGTCTTCTGCAGTGCTAATTATCAG GGCAAAACACCCTTTTTTTCTAAAAACATGCTTCAATCCTTTGTTTCCCTTCTTCCTGTGAAACTGTCTGTGTATGTAAC TTGCTTTCTAAATTGGTTTTCTTGGTAAATGTTTGTGTTTTGTAGGTCTGCCTCCACGATACCGAGATTCAGTTAGATCA ATAACTCCAGGGTTACCTCTTTTTCTGTACAACTATTCAACCCACCAACTCCACGGTATCTTTGAGGTATGTGTGACTGT TTGGCTGTATCTCTTTTTCTCTCTTTATTGCTTCATTTTGTAGCATATTTCAAAATCAATTCTCTCAGCTAGAAGCTATT CATGAAAGTTTCTACCCATAATTGATTTTGGCTAAGTAATCAATTGTAGAAGGATTTTAAAACATGCTATTAGTATAATG ATAGTGCTTCGTTTGGAACCTTCTCAAATCAAGTTATGGATTAGGCCATTCACTTTAACCTTTAGTTGTACTCGGTTTGG AATTTGCAAGTTCATATCTAGGAGTAACTATAGTATGTTTGGTTTTCCGTTGGGAAACCCCTTAGTTGATTCTGGTAGAC TGAAATCAATTAAGGATAAAAATATTGATGTTTGAGAGTCACTTTGGACAATTGATTTCAGAACCAAAATCAATTCTAGT TGAACCTAGGGAGGCTAGCTTCTACGTTGAACATAATCAATTGTGAGATTTTACAACTGAATTTCATAACATTACCCAAC AAGAATCATGTTTTCGTAAATGTATTTGAATATAAATCACTTCACTTTCAACTCACTTTTACTTTAATCAATTTTATCAA AATCAAATGTGACAAACGCTGATCCAAACACGCACTAAATGAGTGGTGGGTTTTGTTCAGGCTGCAAGTTTTGGAGGAAC CAATATTGATCCAACAGCTTGGGAGGACAAGAAGTGCATTGGTGAATCTCGTTTCCCTGCTCAGGTATCATCTCCAGTCC AATTTTATCTATATACACATGGTACAAGGAACCAATATTATATTGCTTGATTTTAATATTTTTGTCAAAGCTTATGAATT TCCATACATGATGTTTACAGGTACAAGTGATTACTAGGAAAATTTGTGAGCCACTGGAGGAGGATTCTTTTAGACCAATT CTTCACCACTACGATGGCCCCAAGTTCCGTCTAGAGCTGAGTGTGGCTGAGGTAACTTCATCTTCAACTCAGGGATTATT GATTCTTTCATTGTATGAAGCTACAGTTCAGTTTTAACTCTTCCTTGTTATACTTTCAGGCACTGTCTCTCCTGGATATC TTTGCAGATCAGAATAGTTTCAATGATGTTTTCAAAGCTATACCGGCATAAAAGGGTAGAAATTGCAGAGAATACAAGGA AAAGTAGTAATGATAAAAATAGAAAATGAAAACCAAGGATTTCTAAAGAGGGTCCAAGATAAGACTATGGATATATGGAG TTGACGATTGGATATTCAGCCTATATATGTATCAATGTATGTGTTGTATAACTATTTGTACAGAAGTGGCTGTTATGCCT AATTGCCCATTTTTCTTGTTATGGGTGTGTATGCAATTCACATAAAAGAATACAATAAGAATGAACTATCTTGCTTATAG CTTTTCTGTACAAAACTACAAGTTGAGACCCAATGGAAGGAATGCAGCATTGTTAGTATTTCTTTGAAGAAACTGGTGTT TGAGACCTTGCTTTAAATATTCTCCCTTCATAAGGGAGATTTGGTATTAGATTGAACCCTCAAATTCGTCTCTAAAAAAT ATAGCTAGCGCTTTAATAGGATATTTCTTCAAAACTTTCTGAATATGTCAATTGTTGATGCATTTGGTCCGTCCGTTACT TTAGTGACAGAAAAGTCAATTTAATTGACAATTGACGCATTCATGGACTTCTGAATGTATTTCCTTCTTTTCTTGATGAA TCTGCCCATATGCCCAATCGTGTATTTTTCAGGAAATAATATGAGGATTAACACTTCGGTTTTATAGTTCATTTTGTTAG GGTTCTTAGCACATCTATATGTCTAACTTGATATGCTTCCAACATCTTGGAGATCTC
CDS sequence (LotjaGi6g1v0035000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACAACAACAGCAATGAGCAATCGTTTTGGCAATTCAGTGACCAGCTTAGGGTTCAAGCATCTGGTTTAGCAAA TCTGTCACTGAATGATTCAATTTGGAGCAACAATTACACTTCCAAGAGACCTGATCAGAGAAGAAACTTTGATGCAAGTG GTGTTAATGGTGTTGTTGATCATCATCATCATCATGTTAACAACAACTCCTTCACCAACTTCATCTCAAAACCTAACTCT GATTTCAATGATGGTGGCTGGAAGATGATGAACACTTCTTCCAATTCCAGTAATGGGTCCCTTTTCTCCATGCCTCACAA CAACAACATCATCACCAACAAGGGGATTTACTCCAACACCAACATCAACCTTGACATGAATAATAATCTCAAGGGTTACA AATCTGGGTTTAATTTTAAGGGTGGTGATGAGTTTTACCCACCCAAAAGTGCAAGGAAGAACACCAATAATCACAACAAC AGCAGCTACAAGCATGGGGACAACAACAATAGTGATGTGACCAAAACTGGGGCTGAGAAGAGGTTCAAAACGCTGCCACA GTCGGAGTCTCTACCTAGGAATGAAACTGTTGGAGGCTATATCTTTGTTTGCAACAATGATACCATGGCTGAGAATCTCA GAAGACAGCTTTTTGGTCTGCCTCCACGATACCGAGATTCAGTTAGATCAATAACTCCAGGGTTACCTCTTTTTCTGTAC AACTATTCAACCCACCAACTCCACGGTATCTTTGAGGCTGCAAGTTTTGGAGGAACCAATATTGATCCAACAGCTTGGGA GGACAAGAAGTGCATTGGTGAATCTCGTTTCCCTGCTCAGGTACAAGTGATTACTAGGAAAATTTGTGAGCCACTGGAGG AGGATTCTTTTAGACCAATTCTTCACCACTACGATGGCCCCAAGTTCCGTCTAGAGCTGAGTGTGGCTGAGGCACTGTCT CTCCTGGATATCTTTGCAGATCAGAATAGTTTCAATGATGTTTTCAAAGCTATACCGGCATAA
Protein sequence (LotjaGi6g1v0035000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNNNSNEQSFWQFSDQLRVQASGLANLSLNDSIWSNNYTSKRPDQRRNFDASGVNGVVDHHHHHVNNNSFTNFISKPNS DFNDGGWKMMNTSSNSSNGSLFSMPHNNNIITNKGIYSNTNINLDMNNNLKGYKSGFNFKGGDEFYPPKSARKNTNNHNN SSYKHGDNNNSDVTKTGAEKRFKTLPQSESLPRNETVGGYIFVCNNDTMAENLRRQLFGLPPRYRDSVRSITPGLPLFLY NYSTHQLHGIFEAASFGGTNIDPTAWEDKKCIGESRFPAQVQVITRKICEPLEEDSFRPILHHYDGPKFRLELSVAEALS LLDIFADQNSFNDVFKAIPA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 79 | 70 | 1.6E-155 | – | |
| PANTHER | 10 | 79 | 70 | 1.6E-155 | – | |
| PANTHER | 139 | 340 | 202 | 1.6E-155 | – | |
| PANTHER | 139 | 340 | 202 | 1.6E-155 | – | |
| MobiDBLite | 145 | 174 | 30 | - | – | |
| MobiDBLite | 150 | 173 | 24 | - | – | |
| ProSiteProfiles | 195 | 327 | 133 | 56.647 | ||
| SMART | 195 | 327 | 133 | 4.7E-86 | ||
| Pfam | 198 | 325 | 128 | 3.6E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0035000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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