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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0042400 |
| Transcript ID | LotjaGi6g1v0042400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | H+-transporting two-sector ATPase, alpha/beta subunit, central region, related; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|Q8N961|ABTB2_HUMAN Ankyrin repeat and BTB/POZ domain-containing protein 2; TrEMBL-Plants: tr|A0A151RPJ0|A0A151RPJ0_CAJCA Retrovirus-related Pol polyprotein LINE-1; Found in the gene: LotjaGi6g1v0042400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8131860..8134642) extracted from Lotus japonicus Gifu genome v1.2.
CGGAACCGTTGATTCACAGGATTTGAGTTTTAAATTGCAGCAGTTTTTCTTTAAAAATAAATAAATTCATGAGTTTCACT CTTCCCATTCCATTCCATTCCATTCCATCTGAAACGTTTCACCTTACCTTTCTGACGTTCATTTTCCGTTTCTTTTCATC TTCTTTGAGCAGTTTCTGTTCATCTGAAACGCATTTGGGTTTCGAAATTGAAAGCTATTAAAAACCATTCAGCCTTCCTC AAAGAATTTCATGTCTTCATTCGCATTAGGGCTCTGCTGCAATCAGGATTGACAAGGGAAATCTCCATGTCCGCTTGGCA GTCAGGATTCGCACAAAGAAATCAAGGCTTCCGCAGTGATTAGGATTTGCTCCGTGTCTGTAATCCGGGCTTTCGGTGAG TATGAAGAAGGTTTAGAATATGTATTTTTGGTTTCGTTTCACGGTTATAGCTCTTTTTCGTTTTCCTTTTCCTGGCATTG TGATTTTTGGTTTTCCTTGCCATTTTCGTAGAAGCACCTCTCCTAACGGCACCGCTTTTTCATTCAGTGTCATCGCCGAT AACATCTCTTGGTTGTGCTGTCTTTCTGTTGGGGCATTGATTTCCCTTCTTTGGGTGAGAATGATGAAGGCTTAAAATAT GTATTTTTTCTGTTTAGTTTCACCTTTTAAAATTATTTTGTTTGGTGAGGATTTTTTTGCTGTGTACTTGCTTTCTAAAA TGATAGAATTGCCATAGTCAGTACTACATTTAGGTACTGTTGGAAACTAAATGATTCACTTCACTCATATAATGTTCTTG CAGATTCTGGCCCCCAAAAGACGTGAGATTGTTGGACAGATTGGTGATGCCTTAAGGGCCAAATTGGATGATAGAATGAT CATAGTCAATTCTACATTTAGATAATTTGGAGATTGTTCACTGAGTAACTGGGTTCCTGAAAGGTTGCTTTATTTTCTGT TTTTTTGGCATGTATTTTGTGTTAGGGCTCCGTCACGGCTCTCTTGGAGAAATTAATCTAGAATACACTGTGATTACTAA AGAGGCAAGGAATCAGTTATAAAGCTTCCCGTCTGACTTTTAGGTGAGTTAAAGGGGGGGTTTTTGACAACACTTCACTT TTTTCATATAGCTTATGAGTCAAACAAACTAAATTTTGAAGTAATAAAAATTTTGTGTTTGCTTGACTTATTTTCATCAG TTGGCCCTGAAACCTTTGCCATGGACCACGAGAAAAATGTACTTCACTATTGGTGGCCCAAGCTTTGTGCACTACTGCAC TAGGATGAACCTCCATGGAATCTGTGGGTCTTTCTTTATTGTTTCAAGAAAAAGCTGCAGGAAATGGCAAAGTTGAAAAT GGTTCAGGCCCTAATAGAGGAGAGGAGAGGAGAGTTTTGAATGCACTACGATTATTTATTGTAATCTCTATCCTATGATG TGGTGATATCTTTTATTAAAATGAACTTATTTTTCTGTTGAGTATAATCTAATAAAGTTGTCTATTCTTTTACATCCTCA CTTTAATTTTGTGTTGAGTTGGTTTTGGAAAAGGTGAGACACCTTTATTGTCATCCATTGCATTTGCAACCTGGGGGACC TTCATTTCAATTTGCATGTGCAGTAACAATTGTGGCCATAAGCTTTTCTGGAAAGAGGAATGGATAGGAAGTGGAATGCT GAAATCTACTTTCCATAAGCTTTTTCATCTTTCAATTCAGAAAAATGCAACAGTAGAGAGCTTTTTGGCTTTTCACTGAG CGAGAGGAAAACTAATATGGTAGGAGAACTTCAGAACCTCATCAATGAATTTCAATTGCGGGGAGGGGTTCTTGACTCTT GGATATGGCAACCAGAACCAGGAAGGATGTGTTCTGTGCAATCAGCTTATAAACTGATTAAGAGACCCCTAACCGAAGGT GCTGATCCGATCTTTAAACTGATATGTGGACATGGCATTCCTTCAAGCATCAGTATTTTTGTTTGGAGGATGATGCTGGA TCGCTTGCCAACAAAAGAAAATCTGCTGAAAAGAAGGATTCTCAAAGATGAACCTGCTGCTACATGCTTGTTATGTTCAC AGACTACTGAGATGACAAACCATCTCTTCACTAGATGCATTGTTGCTGTCAACCTTTGGGCAAAATGTTCACGATGGCTT GGAGCACTATCAACGATGGCTTGGAGCACCACCTGTAAGCCGCAGGGATCATTTTCTACAGCATGTATGGCCTGGCCTCA AGTCCAAACAAAATGACAGATTTAGACTGATTTAGTTTGCAATGGCTTGGGCTTTGTGGGAACATAGGAATTGGATTGTT TTCAATGGAGGGTTGCTGCAAGAGGACTCAATCTTTGATAAAGCACAGCTTAAGGTTTGTCAATGGTTATCTGCAAAGGG AAAGGACTTCCACTTTTCAATGTATGAATGGCTTTCGCAACCTATCCTATGCCTCCAATCGGTTTGATACATACCTGTAC TATTGTGATATTGGGATTGAATTGGCTTTATGTGCAAGGGCCTGATTATGATTGGGGACATTCGGTGCTGAAAATTTTAG AGCAAAGGCAGAACAACTTGACAGCAAGTATCTAATTTGAAGGGATGCTTTAGGGGGCTTTAGTTTTAAAGCTGATCCCA TTTAGTTTTCCCCTGTTTCCTCTGTTTTTGTAACACTCATCTGTTTATGGCTTTTGTTTGTACTTTCTCCTTTCTCTTTT CTCTTTTCTTTCTTTGTACCTTGGGTGGCACCCCTTGTGCCTTTACTAATATATCAATATGGC
CDS sequence (LotjaGi6g1v0042400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAGGAGAACTTCAGAACCTCATCAATGAATTTCAATTGCGGGGAGGGGTTCTTGACTCTTGGATATGGCAACCAGA ACCAGGAAGGATGTGTTCTGTGCAATCAGCTTATAAACTGATTAAGAGACCCCTAACCGAAGGTGCTGATCCGATCTTTA AACTGATATGTGGACATGGCATTCCTTCAAGCATCAGTATTTTTGTTTGGAGGATGATGCTGGATCGCTTGCCAACAAAA GAAAATCTGCTGAAAAGAAGGATTCTCAAAGATGAACCTGCTGCTACATGCTTGTTATGTTCACAGACTACTGAGATGAC AAACCATCTCTTCACTAGATGCATTGTTGCTGTCAACCTTTGGGCAAAATGTTCACGATGGCTTGGAGCACTATCAACGA TGGCTTGGAGCACCACCTGTAAGCCGCAGGGATCATTTTCTACAGCATGTATGGCCTGGCCTCAAGTCCAAACAAAATGA
Protein sequence (LotjaGi6g1v0042400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGELQNLINEFQLRGGVLDSWIWQPEPGRMCSVQSAYKLIKRPLTEGADPIFKLICGHGIPSSISIFVWRMMLDRLPTK ENLLKRRILKDEPAATCLLCSQTTEMTNHLFTRCIVAVNLWAKCSRWLGALSTMAWSTTCKPQGSFSTACMAWPQVQTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 18 | 138 | 121 | 2.0E-22 | – | |
| PANTHER | 18 | 138 | 121 | 2.0E-22 | – | |
| Pfam | 33 | 121 | 89 | 8.4E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0042400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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