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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0043200 |
| Transcript ID | LotjaGi6g1v0043200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT4G26340.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340; TrEMBL-Plants: tr|I1KZ45|I1KZ45_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0043200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8186439..8194053) extracted from Lotus japonicus Gifu genome v1.2.
CACTGATTTTCTTTCTTTCCCGTTTTCCTTCTTATTTTGTTCAAAAACTGAAGCTTATCACTGACACAGAGCTTACCAAT GACAATGGTTGATAGGATTAGCAAGTTGCCAGATGAAGTTCTCTGTCACATTCTCTCATTTCTTCCCACTGAAGAAGCTG TCACCACCATTCTTCTCTCAAAGAGATGGAGGCCACTCTGGCCTTCACTGTCTACCCTAGACTTCGATGACTTTCGATTT TTCCGCCGTCGTCGAGATCTCCAAGGCAAGGAGAAGCAAAACTCAGACCCTTCCTTTATCAACTTCGTGTATGCTGCTAT TCTCTCACGAGATTTGCATCAACCCATCAAAAACTTCAGGCTCATATGGGGTGAAAGTGAAAGTCTAGGTTCCCATGTCA AGGTGTGGTTAAACGCCGCAATACAACAACGCCAAGTTCAGAATATCAAAATCCGCAGTTGCGTCTCCCAAGTGCCTTGC TCTATTCTGAAATGCACAACCCTTGTTGTTCTCAAGTTGAGTTCTGTAGTTTTTGATGATTTTTCAACTGTGGATCTTCC CTCACTCAAAACACTGCATTTGAAGAGTGTTTTGATTGAGAAGCTTCAATCTTTTGTGGAGCTTCTTTATGGGTGTCCAA TTCTGGAAAATTTGAAAGCAAGGGATGTATCTTTTTATGACTATGAACTTGAGGGGAGGGTTAAAAGTTTGCCCAAGTTG GTTAGAGCTGAGGTTTTGGTTTTTTTTCAAGGATATTATATTCCTGTCAAAGCTTTTTCAAATGTGCAGTTTCTGCTCTT AGACGAGGTTTGTATATGGAGAAGGAGAGTGTTTTAGTATTTGCTTAGAAAATGTTTCTAATACTTATGATAATTTATCT TTATATCTCGTGCAGTGCGATGCGGATATTCCTGTGTTTCCCAATTTAATTTATTTGGAGCTCTTATTTGGAGGCTCTAT TAAATTCAGTTTGGCGCTTGATATGCTCAATCGTTGCTCTAAGCTTCAAACTGTTGTTTTTAACCTTGATGGTCGTGATG ATGTTTGGCCATACCCATGTTCTGTTCCTGAATGCTTTTCATCACATCTCACAAAGTGCATTCTTGAAAATTTTGATGCA GTGGAATGTCATATGAGATTTGCAAGGTATGTTATGCAAAACTCAACATCGCTACGTACTCTGACAATTTGCAGTAAGAA GTATCTTAATTATCAGGAAAAGCTTCAAATGATAACAGAATTAGCATCATACCCAAGGAGCTCTGCAATTTGTGAACTTT TATTTGAGTAATTGATGTCCTTGTCACTAGTGCATTTGTTCCTAGCTCTACATTCAATGTATCTGCTGGTTTTGGTGCTT TGGATGGATACAGACTTTATGTATCGTTGTACTCTTCTTGTTATTGTTTTCAAAATTGTCGATCTCATGCACTACAGCTA CATCTACTTCTGTAAATGTGACAGAAACTGAAATGAAATAGCTTTTCAAATTTGCGGTGTGGATGTGTATCTGTTAGAAC TGGTAATCCTATACTACTGAATTAGGAAGAAAATCACAGAACAATGGAGAGAATCTCCATGAAAACTGAGATGAATTGCA TAGAATGGAAGAAAGAGACGATACAGAGGGAGAGAGAAACAAGTTTCTCTCAACAATCTAACTGAATACCAGTATTCAGT TACAAATCCCCAACTAACCAAAAACTAACTCCTAACATGACAGCTTAGCTATTTATAGCTAAGACTTCCTGAAAATACAA CTAGTCCTTAGAGACTTTATTATTCCACTTTAGTCCCCAGACTTACTTATTCTGCCTTCTCTGATATACCTGTGTTACAA TAGGCTTTCCCCTAATCCTATCAGTATCTTAGCCCATTTATCCTTCATAGAAATCATCTTAGCCCATTTATCCTTCATAT AGGAGAAGGACATGAGTTTTTATTCAATATGCATTTAAAGTACTACTTTGAAGTAATTAAAAGCACTTGAGGAACTGAGT TATTTTAGCTTGAAAATTACTGATTGCTTCAGTAAGACTACCCTTTGGTGTATGTGTTTGAAAGCTCTAACTTAATGCAT AGGAAGGGGGTAAAGTTGATGTTGATATATGATGAGGCATGTGGTTAAATTTTGCTGAAGATTGTTAGATTTTGTAACCT TGTGACATTTGAAATTTTTTCAAGAATGTGCACACACAGAGGTCCAAATTCAAATTCAAATCTAAATGATAATGAGAGTT TTTAAAAAATCACCTAGGGAAGTAGTCTATTTGGAGATAACATGACGTTGCCCTTCAATATCTTAGGCCAGATGATTTGT CATTGGATTTAATTACTAAACTTATAACCTGGACAGAAATATAATTTCTTGATAACCTCGACAGTAACATAATTTATTGT GTCATTGGACCTGCATCTACCTCCATTTGTTGATAAAACAAGGAGTTGGCTAATATGTACAATGCCAGATGATTCCTATG TCATTTGTAGTTTCCTTCCTCCAATCTCCCTTTCTAACTGATTTCAGATTTCGAAAAAAGAATAGAAGAAAAAGTGTGTT TATATTTAAAATATTGGAAACCCTTACTATAAATAGAGTTATGAATGGTACAAGTATGAATCTAATAATTCCCGTTTTCA AGTCTTCTAAGTGCTGATAGTTCGTTAATTATGTACAAACATGTATTGATCTTTTCTCCTTTTTAAAATTTCATTATGCT TCTTAAAGAATCCCAAATGTACAATAACATAAAAAAAAACATATATATAAAACCTGCTACTGATTTCCTATATGATATAT GACATTTAAGTTTGTTTGATATACTGTGGTGTATGGATCCACCCTGAAGGTAAAGCTGCATGCTTCTACAGCAAGTATTC TTAGGAATATAACAATAAGTCAGTATCATGCTAGAAAAAAGCTAACTGCTCACTGATAGGTACACGGGATTAGCTAGTTA GTATTAGATTTTATTATTAGTATCTTTTATCCAGTCAGCATTAGGTTTTATATTTTATTATTATATTTTATTAGGTTTAG CATAATTAGAGAGTGAGTCTATAAATAAGTAAGTTAGAGAGACAATTGGGTATCTTTGTTTTCACTTTGGAATTAGGGTT TAGAGAGCGTTGGGTCTCTCTGGTTCTTGGGAGGGTGTTTGGGATCCTTGTATCTTTCCCCCAATTCCTATTTGGCAATT AGGGTTTTACCATTTAATAATATTAGATTTGGCTGGTTTCTATCATTGGTATCAGAGCACCGATTCAGGTGCCCTGGCCA AGAAAACCCTACAGTAACAACGTATGAAGCAGATGGGTGGTAAAAAGAAAGAGGATTTCAGAGGGAGTTCATTGGCACCG CAGGATAAGGAGGAAATATGCGCACTTTTGAGAGATTGGATGATTGAGAACGCCGAGTTCAGAAAGCAAGAAGAGTTGAT TGAAGAACGGTGGACAGAACTCGATGAACGAAGAAAGAAGAAGGAACAAGAAAGAAGTTGATGAAACCCTGATATTTATT CAACAGAAAAATGTACAAGAAACAGATGAGTATTCGAGAGACTCATCACTCTCCTAATTCCCAATTCCCAAATGATCCCA AAGATACCTAAACCCTCTTCACACTCCCTTATTTATAGGCTAAGCCGTAACTAACTAACTAACTCTAAATGCTAACCCTT AACTAACTAACTAACTCCAAGTACTCATCAATACTCCCCCCTAAACATCCACCTTGTCCTCAAGGTGGGGTAAAACACAA GCTTCTTTAAACAAACAAAAAACAAATACTCCAACAGTTGGGCCTGGCCCATTAGAGTAAGGGAATGAACTGGTCTGTAG ATGATTGAGAAAGAAAAGTTCCTCTTGGGCCCGTTCCTTCTGTTTAGCATTATGGGCTTTGGCCTTGTGGTCAAACTTTG ACCCAATTCTGAAAAATCTAGCTGAGCCAGCCTTGCTCTGCTTCGTGTGAACGCGTGTGCGTGTGAAGACAACGGAAAGA CCACACCCAACCAGCGACGACGGAAACGAGCGTCCCCCGCCATAACTGCAAAGTCCGGTGGCTTCGCCGGCGGCCGTGAA ACGGTTACCGACTTGCGAATGAGCGAGCGCCCTTTACTCTCCTCCGTGCGAACTAACTCGAGGCCACAGTATCCCACCAC CGCTGTCTCAGCCAAATCCGGTGGCTTAGCTGGAGGACGGTTGGCCACCAAGTCCGATCTGCAAGAATCGCCAAGGATGA AGTGTGAGCTGCCACCACTGCGGTCTGGTGGCTTAGTCTCCAGTTGAATGGCAACCATCGAAGAGCAAAGAACAGAGGTC TGAATGAAGACCTCCGTCCAGCAAAAGAACGTGTCCGGCAGTCGATTGGCGGTTACCGCCGTGCAGAGACATGAATCCGG CGGTTTCCGTGGCGGCCGTCTCTCCCAATCGAACCCTAAATCACTGATTTGGGGCAAAACGATTGGTTGCACCTTCTTCC TCCCATGAATGCTGCAAATCTGCCATTTCTCCATTGAAGAACCTTCCTGTAACCGCTTGATTTTGATTTCCCCTTCGGCG TCGATCTTCTCCCCTTTCGCCGTCAACGTGCAATCGATGTAATCAACCACGGTGTCCGGTTGACACCGTGACACCTCCGC TGTTTGCTCCGCCGCCATTGCAAACTCCGAGTCTTTCCGCGACGCTTCCATCTCAGAATTCTCCGGCGAATATGGCTTGA TCTCTGATTTCGCCAACAGCACTGAATTGGCCTCAGGTTTGGCTTCCACCACAACAGTTCTTCGTTCTGCCTCCAAGACT TCTTGCTTCCCAGGGATTTCTTCCTCCTCTGAATCTTGGACTGGTTCTGGCATGTACGGTTCCAATTCTGGTTCGAATTT CCTCAACAGAGCCTCCACAAATTCCCACCATGTTGCCTTCTGATTGCGTCTTCTCCAGCAAAACCACCACATGAAAGCTT CACCAGTCAAAGCCTTCTCTGCCCCTGAGAATTTCTCCTCTTCGGATACTCCCTTGGCCTCACAGTGTTGCTCCACCATA ATGAGCCATCCGTAGGCCTCTCTTCCATCAAATTCTGGAAACATCTTCACGAATTGATGGCAATCACAGCACCTAGATCG GTGCTCTGATACCAATTGATGAAACCCTGATATTTATTCAACAGAAAAATGTACAAGAAACAGATGAGTATTCGAGAGAC TCATCACTCTCCTAATTCCCAATTCCCAAATGATCCCAAAGATACCTAAACCCTCTTCACACTCCCTTATTTATAGGCTA AGCCATAACTAACTAACTAACTCTAAATGCTAACCCTTAACTAACTAACTAACTCCAAGTACTCATCAGAAGTGAATCGG AGGCACCAACCGTGGCAGAGCAAACAGCGGCAGAGGCGTTGCTGGAAGGAACGGGGACCGCAGCGGAAGAAGAAAGAGAC GCTATGGTGGCTGAGCAAGCATCTGTAGCAGAGGAAGTCTTGACGTTTGAGGAGAGGCGAAAACCCAATCTTGAAGCCGC GGATGAAGAACAAGTAGCAACAGAGGTGTTGCGAAAAGAATCTGAACCCGATTCAGTTAAGGAATCAGAAGCAATGGATG AAAGAAGAGGTCAGCAACTGAAGGCGATGGAGAAACGCAAGCATCAACCGCCACTGGTGCTGAGTAGAGGAACGCTGAAT AGAGGAACGACCAAGGTGCCATCAGCGGCGCACTTCGCACGCGCAGAGATGAAGTTGTTGGGCGAGAGAAATATGGGAGC GCTGCTTGCATCTTGTCTTCCTCTCTCACCTTCTTCAACAGAAAGAAATGCTCCAAACTGTGTACCCAATCATACGCATC ATCACCCCCAAAAATTGGAATTTTCCTCACCAATTCCTCTGAAATTCTTGCCATGCTCCTTGCTTCTTCCATAGCGCAGC AAAGAATTGGTGGTTCAGGCACCAGATCGGTGCTCTGATACCAATGTTAGAACCAGATGTTTTATTGATGATAAACCCTA ATTCCCAAACTGAGAATCAGGGCAGAGTAAAAGAGAAAGAGTCCACACTCAATCTCAAGAGAGTCCACACCCTCTTCCTA GGCCCCAAAACCCAAAATGAACTAAAAGATACCCCTAGCTCTCTAATGTCTGTTATTTATAGGCTACATGCCTCAATAAC ATTCTAACTAACTCACTATGTCTAACTAACTAACTAACCCCTAACCTTGAGTTCCTATCACTCACTCTCTTCTATCACCT CCACAAACAAAGTTACATGCTTAGATTAAAGACTAAAGTAGAGCTTTGGTGATTTCTTAAATTATATCTACTTTAGACTT GAAGGTGCAGTTAGTTTGGGTCTCTTTATATAGCAGGGGCTTGAGAAGGTATATCTTCCAATAAGATAACAAACCTCCAA TAAACAACTAGGGAATATGCATCTGATGGAAACAATTTTTGTTAATATTTTAGCTCTTTTTGCTCTGCTAAACCAAATTA ATAGCCATTCATTGAGCAGAAAGACATGAACCATTGGTTGTGTGAAAGCAGCCGTGTAATCTACTTCATCGCTTTCACCA ATCGTATTAAATATTAACTACTGTCTGCCTCTGGTCTAATTGGGAATGGTAAGTTTGTGTTTGTTTTGTAGAATTAGGAG AATTCTAAGTTTTGAGCCTTAAGAGGCTATGAGTTATCTGAAGAAAATAGTATTTGGCGTGTTCGGATTTCATAACATTT ACAATTAGCTTCAAGGTTTATTTGCTATTAAGGTTGGAGGGCTGCATACAAATTGCAAGTAATTCGTGTTACGCATTGTG ATTGAGAACTGTTGCATGTTTGTTGGATTTCTTTTCTCATCTTGGCTGCTTTTATTGTTGTCACTATCCTGGCTCTATTA TTAAAAGTTCATTTTTTTTATTGCATAAGATGTCTTGTTCTATGCTTTTGTGCTCTGGGCTTAAGCAGTCGCGCCATCTA CTACTTCTTGGAGGAACCTACAAGAAGACACATTACTTTTTCATAGACTCTAGCAGTAGCATCAATGTGATAAATGCAGA TGTTATGAAGCAGCAAAGAAGCTTTCGCTCAACTCTTTGTTTATGCATTGCTGTTCTAACAACACCCCTGTCCCTTCAAT GATCTAGCCCTATTTAAGTCTTCTATCTATCTTCCCTAAAATACTTTGTCTGTTATTTATATTATAACTAGTAAATGAAG AATACATAAGAAGATGATAGAACTTAAATGTATCTCTGAGAACCATGACAAAACAATTATTTGACACATCTTGATATTTC TAATGCAACAATTGTGAAATTAATTTGCAATACATGCAGTCAAATAAGTCCCAAACGTTACTATCATCATTAACAGTCCG TCCTTTTCTTTATTTGGTAGTTCTTCTGTGTAATATTGCACATTATTCAAACTTCACCTATATAGTTATTGCCTAGGTAA ATTTTAACTTAATTTATAGGTGGTACAATTTTGTGGCTAATCTTGGCTTTGCTATTGCCAAAAGTGGTTCAGCAAGAAAC ATTTCACTTTTGCACTCATTAAGATTGATGCTAGACACATTGGACGGTGCACTCCAATTAAAGGCATGGAGTAACCGAGC AAGTAGCACCATAGT
CDS sequence (LotjaGi6g1v0043200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAATGGTTGATAGGATTAGCAAGTTGCCAGATGAAGTTCTCTGTCACATTCTCTCATTTCTTCCCACTGAAGAAGC TGTCACCACCATTCTTCTCTCAAAGAGATGGAGGCCACTCTGGCCTTCACTGTCTACCCTAGACTTCGATGACTTTCGAT TTTTCCGCCGTCGTCGAGATCTCCAAGGCAAGGAGAAGCAAAACTCAGACCCTTCCTTTATCAACTTCGTGTATGCTGCT ATTCTCTCACGAGATTTGCATCAACCCATCAAAAACTTCAGGCTCATATGGGGTGAAAGTGAAAGTCTAGGTTCCCATGT CAAGGTGTGGTTAAACGCCGCAATACAACAACGCCAAGTTCAGAATATCAAAATCCGCAGTTGCGTCTCCCAAGTGCCTT GCTCTATTCTGAAATGCACAACCCTTGTTGTTCTCAAGTTGAGTTCTGTAGTTTTTGATGATTTTTCAACTGTGGATCTT CCCTCACTCAAAACACTGCATTTGAAGAGTGTTTTGATTGAGAAGCTTCAATCTTTTGTGGAGCTTCTTTATGGGTGTCC AATTCTGGAAAATTTGAAAGCAAGGGATGTATCTTTTTATGACTATGAACTTGAGGGGAGGGTTAAAAGTTTGCCCAAGT TGGTTAGAGCTGAGGTTTTGGTTTTTTTTCAAGGATATTATATTCCTGTCAAAGCTTTTTCAAATGTGCAGTTTCTGCTC TTAGACGAGTGCGATGCGGATATTCCTGTGTTTCCCAATTTAATTTATTTGGAGCTCTTATTTGGAGGCTCTATTAAATT CAGTTTGGCGCTTGATATGCTCAATCGTTGCTCTAAGCTTCAAACTGTTGTTTTTAACCTTGATGGTCGTGATGATGTTT GGCCATACCCATGTTCTGTTCCTGAATGCTTTTCATCACATCTCACAAAGTGCATTCTTGAAAATTTTGATGCAGTGGAA TGTCATATGAGATTTGCAAGGTATGTTATGCAAAACTCAACATCGCTACGTACTCTGACAATTTGCAGTAAGAAGTATCT TAATTATCAGGAAAAGCTTCAAATGATAACAGAATTAGCATCATACCCAAGGAGCTCTGCAATTTGTGAACTTTTATTTG AGTAA
Protein sequence (LotjaGi6g1v0043200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTMVDRISKLPDEVLCHILSFLPTEEAVTTILLSKRWRPLWPSLSTLDFDDFRFFRRRRDLQGKEKQNSDPSFINFVYAA ILSRDLHQPIKNFRLIWGESESLGSHVKVWLNAAIQQRQVQNIKIRSCVSQVPCSILKCTTLVVLKLSSVVFDDFSTVDL PSLKTLHLKSVLIEKLQSFVELLYGCPILENLKARDVSFYDYELEGRVKSLPKLVRAEVLVFFQGYYIPVKAFSNVQFLL LDECDADIPVFPNLIYLELLFGGSIKFSLALDMLNRCSKLQTVVFNLDGRDDVWPYPCSVPECFSSHLTKCILENFDAVE CHMRFARYVMQNSTSLRTLTICSKKYLNYQEKLQMITELASYPRSSAICELLFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 371 | 368 | 1.3E-81 | – | |
| SUPERFAMILY | 4 | 57 | 54 | 1.44E-12 | ||
| ProSiteProfiles | 4 | 52 | 49 | 10.504 | ||
| PANTHER | 4 | 371 | 368 | 1.3E-81 | – | |
| Gene3D | 5 | 361 | 357 | 1.5E-21 | ||
| Pfam | 6 | 40 | 35 | 8.0E-7 | ||
| SMART | 10 | 51 | 42 | 7.9E-4 | ||
| SUPERFAMILY | 129 | 343 | 215 | 5.89E-8 | – | |
| Pfam | 299 | 341 | 43 | 2.8E-11 | ||
| SMART | 302 | 374 | 73 | 1.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0043200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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