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LotjaGi6g1v0043900.1

Overview

Field Value
Gene ID LotjaGi6g1v0043900
Transcript ID LotjaGi6g1v0043900.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Glutathione S-transferase; TAIR: AT1G78370.1 glutathione S-transferase TAU 20; Swiss-Prot: sp|P25317|GSTXA_TOBAC Probable glutathione S-transferase parA; TrEMBL-Plants: tr|A0A1J7G5L3|A0A1J7G5L3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0043900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8310397..8312079) extracted from Lotus japonicus Gifu genome v1.2.

GTTATTCTTTTCACATTTTCAAGTGTGCTCCAATTCCATAAAAGAAGCATTAAATATTGTACAATTATTGGATAGCTATC ACTCTGCATTCAAAGAAATAAAAAAGGAAAAAAAATAAGGGAACAAGGAGCACAACAAAGCTAGATCCCAAGTCCAACAT GATCATTGACGCCATCTGTGATATAACACTTCCACGTTTTATTGTTTGCCAAACAAGCAATGCACAACTATAAATACCCC AAACCTACAAAGATCAAAATCAGCTAAACAATCTTATAAGTTTCTCATCAAAATTAATCCAAGGCAAATGGCAGAGAACA AGGTGGTTCTGTTGGATTTCTGGCCAAGTTCTTATGGAATGAGGGTGAAAATCGCTTTGGCAGAGAAGGGCATCTCATAC GAGTGCAAGCAAGAAGATTTTCAAGCTAAAAGCTCTCTGCTTTTAGAGATGAACCCAGTTCACAAAATGATCCCTGTTTT GATTCATAATGGAAAACCCATATGTGAATCACTCAACATCGTTGAGTACATTGATGAAGCTTGGAACCACAAACCTTCCC TTCTACCAGCTGACCCTTACAAGCGATCTCAAGCCAGGTTTTGGGGAGATTACATTGATAAAAATGTAAGATATCTTTTT ACTATGTATATTGTTACGAATTTAATTAGTATATATGTTAGGGTTAAATGTGTTTTTAGTACCGTAAAATAGGTGTGAAT TGAATTTGGTTCCTAAAAAAAATCATAAATTTTGGCCCAAAGCCCCAAACCATCACTGAAATATGTGAAGTTAATCTTAT GGTGGTTTAAATTCTGCACCATATGGACTAAAATGTGAGTATTTCAAAAGTTTGATCACATCCTACATATGCTTCTTGTC CACAATTTGCACATTTCATCATTCTTCTGATCTTCTCTAACATGATGTAATTGTAGGTATACAGCATTGGAAAGAGAGTG TGGACAGGAAAAGGTGAAGATCAAGAAGAGGGCAAGAAGAAATTTATTGAATGCTTGAAGATTTTGGAAGGAGAGCTTGG AGACAAGCCATATTTTGGTGGTGATAACTTTGGGTATGTGGATGTGGCTCTTGTTCCGTTCACCAGCTGGTTTTACACGT ACGAGACATGTGGGAAACTGAGCATAGAGGAAGAGTGTCCCAAGCTTGTGGCTTGGGTCAAGAGGTGCATTGAAAAAGAG AGTGTGAGGAAGGCACTCCCTCACCCTCACAAGATCTATGAGTTTGCCCTGCAATATAAACAGAGAAATGGACTTGAGTA AAGATTGCTGCTGATGAAGCAAACTCTGTGTTCCGTGGAGAATAATACATTATGAGTGTAATCTCAATAATGTAAAATTT GCATGTTTTGTTTTGTTTTGTTTTTCCCACATAAAACATGTTCTTACTATGTCTATGTAACCGTCTTCCCTGGGCCGAAG TTTCTGTCATACTTCTTATCAATATATTTATTTGGCTTCTACAAAAAATATTGCACAATTTGAATTTTGCTCAACATGTG ATTGGAGTCTTTATTCCATGACTACTTTTAATGACTTTTTGAATTACTTTAGTTTATCTTAAAAATTTATGTATGATTTA GATTGTGTTTGTATGATTTACATTTTTGTCAATGTAACCTCCCTGTAAAAAAAAACACAATTTTGCTCAACATGTGATTG GAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0043900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAGAACAAGGTGGTTCTGTTGGATTTCTGGCCAAGTTCTTATGGAATGAGGGTGAAAATCGCTTTGGCAGAGAA GGGCATCTCATACGAGTGCAAGCAAGAAGATTTTCAAGCTAAAAGCTCTCTGCTTTTAGAGATGAACCCAGTTCACAAAA TGATCCCTGTTTTGATTCATAATGGAAAACCCATATGTGAATCACTCAACATCGTTGAGTACATTGATGAAGCTTGGAAC CACAAACCTTCCCTTCTACCAGCTGACCCTTACAAGCGATCTCAAGCCAGGTTTTGGGGAGATTACATTGATAAAAATGT ATACAGCATTGGAAAGAGAGTGTGGACAGGAAAAGGTGAAGATCAAGAAGAGGGCAAGAAGAAATTTATTGAATGCTTGA AGATTTTGGAAGGAGAGCTTGGAGACAAGCCATATTTTGGTGGTGATAACTTTGGGTATGTGGATGTGGCTCTTGTTCCG TTCACCAGCTGGTTTTACACGTACGAGACATGTGGGAAACTGAGCATAGAGGAAGAGTGTCCCAAGCTTGTGGCTTGGGT CAAGAGGTGCATTGAAAAAGAGAGTGTGAGGAAGGCACTCCCTCACCCTCACAAGATCTATGAGTTTGCCCTGCAATATA AACAGAGAAATGGACTTGAGTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0043900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAENKVVLLDFWPSSYGMRVKIALAEKGISYECKQEDFQAKSSLLLEMNPVHKMIPVLIHNGKPICESLNIVEYIDEAWN HKPSLLPADPYKRSQARFWGDYIDKNVYSIGKRVWTGKGEDQEEGKKKFIECLKILEGELGDKPYFGGDNFGYVDVALVP FTSWFYTYETCGKLSIEEECPKLVAWVKRCIEKESVRKALPHPHKIYEFALQYKQRNGLE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.40.30.10
1 88 88 2.5E-38
IPR036249
SFLD
SFLDG00358
2 216 215 0.0 –
SFLD
SFLDG01152
2 216 215 0.0 –
PANTHER
PTHR11260:SF620
4 216 213 7.5E-110 –
ProSiteProfiles
PS50404
4 83 80 22.385
IPR004045
PANTHER
PTHR11260
4 216 213 7.5E-110 –
SUPERFAMILY
SSF52833
5 107 103 2.95E-23
IPR036249
Pfam
PF02798
6 77 72 1.5E-16
IPR004045
CDD
cd03058
6 79 74 7.68321E-44 –
SUPERFAMILY
SSF47616
77 216 140 8.87E-48
IPR036282
Gene3D
G3DSA:1.20.1050.10
89 220 132 2.1E-50 –
ProSiteProfiles
PS50405
89 209 121 22.146
IPR010987
CDD
cd03185
90 213 124 2.19751E-57 –
Pfam
PF13410
124 189 66 5.3E-14 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0043900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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