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LotjaGi6g1v0047200.1

Overview

Field Value
Gene ID LotjaGi6g1v0047200
Transcript ID LotjaGi6g1v0047200.1
Lotus japonicus genome version Gifu v1.2
Description Deoxyuridine 5'-triphosphate nucleotidohydrolase; TAIR: AT3G46940.2 DUTP-PYROPHOSPHATASE-LIKE 1; Swiss-Prot: sp|P32518|DUT_SOLLC Deoxyuridine 5'-triphosphate nucleotidohydrolase; TrEMBL-Plants: tr|K7MPZ4|K7MPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0047200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8668521..8670058) extracted from Lotus japonicus Gifu genome v1.2.

ACGATAGCGGGAAAACTTGGCGCCATGAAAGCTTGCAATTTCGTCTTCCATTTCCTATATAAACCCAACCCAACCCTAAC TCCCTTCATTTCCTCTCTTCTCCGACCTTCCCACAATGGCAACCACAAACGGCGTCGTCTCAGCCCATCTTCTCCGAGTC AAGAAGCTCTCCGAAAACGCCGTTTTACCTTCCAGAGCTTCACCTCTCTCCGCCGGCTACGACCTCTCCAGCGCCGCCGA GACCAAGGTCCCGGCGCGAGGAAAAGCCCTCGTCCCCACCGATCTCTCAATCGCCATTCCCGAAGGAACCTACGCCCGTA TAGGTAATTTCCCCCTGTTAGGGTTTTTACTGGGATTTCATTTTTGAATTTTTGTTGGGTTTTGATTTTTGCAGCGCCGA GATCGGGGTTGGCTTGGAAGCATTCGATTGATGTTGGTGCGGGAGTGATCGATGCTGATTACAGGGGTCCGGTGGGGGTG ATATTGTTCAATTTCTCGGATGTTGATTTTGAAGTGAAAAAGGGGGATAGGGTTGCTCAGATGATTCTGGAGAAGATTGT GACACCTGAGGTTGCTGAAGTTGAGGATTTGGATTCCACTGTCAGAGGTGAAGGTGGTTTTGGATCTACTGGGGTTTAAT TCTCTAACTATGATTTGTTGCTTTTTAGGATTAGATTACTGGCATGTACCAGAAGAATGAATGGCTTTTGGTGATTTTGT ATGATAGTTTGTGGGCTTGTCTCTCCTTTTTTCTTTGTAGTAATCTTGGGTTTTCTACGATTTCTATGTATAATAGTTTG GTAGTAAAAGACAGATGGAAACTGAGGATTGCTTTTTACACATCTTACATTTTTATTAATCTCACATTGGAGTAGGGTTA AGGTAGAAATCAATACCCTAAAATTTTCAATTCCTTTGGAAACCAATAATCATACTTCCAAAAGATTCAGCTTCCAAAAT GCTTCAGCATTTATGCTATGATGATCCACTTAAAAATGAACGGGATAGGATACAGAAAGCAATAGAGCAAACTTCGTAGG AAGTACAATAATAAACTTCAAGGGATCGAAGTTCAATTTCAGCAAACACACAAGGCTCTGGATACCACATCTCCAGCCTT ATAGATCCTCAGCATTTGGGCCAGCCGCTGCCTCAACTCTCCCCATCTTGCAGTAACATTCCTGCAGCAACTCATCATCC ATCTTCTCATCGCGTGTGAATGCCATCAGTTAATCAGATGTGGCTTCAATGAACAAATCACGATTACGCACCAGTAGCAG CGTGCGCTAAGCGCCATAGATTACCGTATAAGAGACTCCATAGATTACCGTTTAAGAGACTTTGCCATGGCTTATCACCT CAAGAAGGCCATGTGAAGTGAAATGTCTTTGTTCTGTGTTGATTTAGGGCATGCTTTAATACCACCACGAATGTTCTCTG TGCATATTTGTCCTAACACCATGCTATTGTTGACTTTGTTATTTATCTTATCTTTAGTTTACAGTTTAGCTAATTCAGAT TACATTCTGATAAGTTCC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0047200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACCACAAACGGCGTCGTCTCAGCCCATCTTCTCCGAGTCAAGAAGCTCTCCGAAAACGCCGTTTTACCTTCCAG AGCTTCACCTCTCTCCGCCGGCTACGACCTCTCCAGCGCCGCCGAGACCAAGGTCCCGGCGCGAGGAAAAGCCCTCGTCC CCACCGATCTCTCAATCGCCATTCCCGAAGGAACCTACGCCCGTATAGCGCCGAGATCGGGGTTGGCTTGGAAGCATTCG ATTGATGTTGGTGCGGGAGTGATCGATGCTGATTACAGGGGTCCGGTGGGGGTGATATTGTTCAATTTCTCGGATGTTGA TTTTGAAGTGAAAAAGGGGGATAGGGTTGCTCAGATGATTCTGGAGAAGATTGTGACACCTGAGGTTGCTGAAGTTGAGG ATTTGGATTCCACTGTCAGAGGTGAAGGTGGTTTTGGATCTACTGGGGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0047200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATTNGVVSAHLLRVKKLSENAVLPSRASPLSAGYDLSSAAETKVPARGKALVPTDLSIAIPEGTYARIAPRSGLAWKHS IDVGAGVIDADYRGPVGVILFNFSDVDFEVKKGDRVAQMILEKIVTPEVAEVEDLDSTVRGEGGFGSTGV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11241:SF9
3 150 148 1.0E-88 –
PANTHER
PTHR11241
3 150 148 1.0E-88
IPR008181
Gene3D
G3DSA:2.70.40.10
9 150 142 1.1E-56
IPR036157
SUPERFAMILY
SSF51283
10 150 141 7.59E-48
IPR036157
TIGRFAM
TIGR00576
14 149 136 6.8E-56
IPR008181
Pfam
PF00692
21 149 129 9.2E-47
IPR029054
CDD
cd07557
33 121 89 6.89067E-32
IPR033704

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000287
Molecular function Magnesium ion binding Interacting selectively and non-covalently with magnesium (Mg) ions.
Subterm of
GO:0004170
Molecular function DUTP diphosphatase activity Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
Subterm of
GO:0006226
Biological process DUMP biosynthetic process The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
Subterm of
GO:0046081
Biological process DUTP catabolic process The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0047200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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