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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0047900 |
| Transcript ID | LotjaGi6g1v0047900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein ROOT PRIMORDIUM DEFECTIVE 1; TAIR: AT1G06440.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|A0A072UXM1|A0A072UXM1_MEDTR Plant organelle RNA recognition domain protein; Found in the gene: LotjaGi6g1v0047900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8760818..8765077) extracted from Lotus japonicus Gifu genome v1.2.
ACTTTTTAAGGTACCTTGAACTTCATTTTTGCTTTTGTAACAAAGAAAAACAAAAAAACCTATAAAAGAAGTCCCTCACA TCTTATGGAAAATGGATTGAAAGGGAATTTGGCTCTTTCAGCAAAACCTGGGATGAGACACGGAAACAGTTAGATGGAAT CCTAGTACATGTAAAAGAACAAAGCAACGGCTCTTGATTGGTACTAGGTGAAGATGGAATCTTGCCAAAAACCTTGATTC GCTGTGAATCCCCTCAGGGAACCATCTTCGAAATACTTGCACCATGGAATCATCAAAGCAAGTGAGTTCCTCTGCAATCA GGAAGTTCAGTACTCCAGTTCCTCTGCAAGGAGCACCATGAACTTGCGTTCCAAATCAACCTTTCTTCACTCTGAATACT CTGTTTAGGTTCTCTGAATAAACTGAGCCTCAACTGTTCGACGAAATGTCTAACCGAGTTTTCATGAAAAAGGGGCTGCT ACCAGCATTGGGTGCCCACATTGTGAACTTGCTAAGCACAAGCAAACAACACTGCGGTGTTTCCATAGTGGTTCGATCGA AAACGACGTCTGCCCAGTACGTGGCTGCGAGAGCTCGAGATGCCACGTTTGAGAAGCTCATGGACAAGTACAAAAACCTT CTCAAAGTCATCGCGGTTCAAGACCTTATCCTCGCTAACCCCAAGAACCCATCAGTCTCTATTGATTTCCTCTCCAGGCT CTCCCAGAAGCTCCACCTCAACCGCGGAGCCACTGCCTTCCTCCGCAAGTATCCTCACATCTTCCACATTTACTATGAGC CCTCCAAGTTGCAACCCTATTGCAGGTTGAGTAGTTTTTATATAAACACAGTATCTGATAGGAACACGTAGTTATGAGTT GTTTTAAATTTTAGCATGAGTTTTGATGTTCTTTTAATAGGGGATGTCTTTTTATTTTATTTTAAGGTATATTGAGTTTT TAATTAGTTGTATCAATAGGCCCTGTGCTCATACAAAAAATTGCTCTTGCAGGTTGACTGATGCTGCTCTTGATGTATCG CGGAAGGAAGCGGAGGCCATTAATGCTTCTATGCCAGTTGTTGTTGACAGACTTGTTCGGATACTGTCCATGTCTGCATC CAAAATGGTTCCACTTCGAGCTATTTTCAAGGTTTGGAGAGAGCTTGGCCTACCTGATGATTTTGAGGATTCGGTTATAT CTGCTAATTCTAGTGTTTTTCAGCTGTGTGATGGGCATGAACTAAATACTCATTTGTTGAAGTTGGTTGGTGATCTTCCC AGTGATGGTTTTAGAGCGACTGTTGAGGATTGGAGGCTGGTTGAGTGCTGTAAGGAGGACAGCAGTGTTGATAGGATGGA AATGCGGTTCAGTTTCAAACATGGGTATCCTCCAGGGATGAGGTTGACCAAGACTTTCAGGGCCAATGTGAAGGAATGGC AGAGTTTGCCTTATGTGGGGCCTTATGAGGTGGTGAGTGAGAAGAAGAAGTCTAAGGCTGGGATGATGGCAATGGAGAAA CGAGCGGTGGCAATTGTTCATGAATTCTTGAGTTTGACAGTGGAGAAGATGGTGGAAGTTGAGAAGATCAGCCAGTTTAG GAATTGGTTTGGGATTGATTTAAATATAAGGGATCTGTTCCTGGATCACCCAGGGATCTTCTATTTGTCAACTAAGGGGA AACGCCACACTGTTTTCCTGAGGGAAGCTTATGAGCGGGGTTGTTTGATCCAACCAAATCCTGTTTATGATGCAAGGAGA AAACTACTTGATCTTGTTCTTCTTGAACGTAGGGGTCTGCCTGCTCTTAATTCCAACTTGCAGGATAGAAGCAGTAACAA TGAGGAGGACAATCAGCAAACACATGACTCTTTATCATCTTGACTAAAGCATTACTGCTGCTTTGTTAAGGTGCCTTGTT TATTGCTTTTTCCGCGTCCGAGATTGGTTCATTTTCTTGTGTTGCTATTGGCACATAAGTACAAAGAAGAAAACTCCTTT GATTCTGACTTGGTCAAAAGTTCAGCATAGACCATTTTGATATATATGAAGACATCATAATTAATGAAAAGCTATCTTCT GTAGCAGAAGGACTGGATGGATGAAATCTGAGTGTAACTTAAATCCGTCATATTACATGTTTCAGCCTGTTATGAAAATA TTCTGCTGCAGAAACTCTCCTGTAACTGGCTTTTCATCGCATTGAAGGATGCAAAATTATGGTTACCCCCTTACCACAGA AGCTCTACTACAGAGACCGTGGATTCAAATGCCTTGTTGCTTATTTTCCTATTCATTTTCAACATGTTGGCAACTAAATA TCATATCAGGGGAGGGCATGGCAATCTAGGCTTCTCTTGAGGAGCTAGTTTGCAGATCATCTCTTGATGCTAGAGGTGTG CAGTGGGTGAACATGTATTCGGCCCTAGCGAAACCTTGTCATGATACTCTATAATGGCACAGTGGCAAGGTTTCCTACTT CAGAGGATGTTGGAGCCACTTTGCTAATATCAATTACAATGATAAACTTGTTCGTTCTGTTGCTACTATTTTAATAACTC ACAAAACATATTTATTTCTTGTATTGTGGATGTATAAGTAGAGTTGATTATGTTGTGGCACACCACATTATATATCTGAA AAAAATGTAATATTGCTCTTTCCCGATAGGCAAACAAGATCATTCCTTTGTTCTATTGATTGCTATTTTATCCATTAACA TCTGTGATGTGAAGCACCATGGTGAAATATTTACAATAATAATGAGCTCATGTACATGTGACCTAAGAGTGAAACATTCA TTTCTTTACGGTAGAATTAACAAGTCCAAATAAACGTATCATATGATGGTAAAGTTCTTCCATTATGATCAGCCACTTAT CATATTTCGCTACAAAAATTGTATATTCAGATAGTCAAATTTAAATTTTAAAAGTTGCCTCTTAGGCTGTAATCAGCTAA TCTTGTATGACCTGAGCCACATTTTCTACATATTTATCTGTTGTTTTATGGTTTAGAATTAATGACCATGTCCCATTTTT TATAACTGAATGAGGATCAGGTTGAAAAAGCAGTTAACATTTGTCATCCCAGTTACTTTATCTGAATGGATCCAATTCTG TTATATCTTCTGCAGCCTTACTACCCAAGCAAATAACTGTTGAATCTCAGCTTTCATCTGCTGATGCTCATTGTGTATTG CCTCAGGTGGAAAACATGGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCCCCATTTCCTGGAAGAGAACA TTCTGCATACCAAAGAAGGTGTGATCCTCAGAGAAATCATTCATTACGGATTAATTTTGATCCCTCATCTCTTATGCTGC AAAATGACATGCAAACCCTTAGAAACATAGGGAATGTGAATGATTCACTGTCATTGCCGTTTTCTGCTTCAAACTGTGGT GTTACGTGCACTGATTTCCCCCTAAGTTCAAACACGATAACATCAAGTTGAGTGGACGAATCAGGCTTCTTGCAGTCTTC TGAAAATGTAGACCAAGCAAATACACCAACCGGAACCTTTGTCAAGGTTCACAAGTCAGTACCCTTTGGGAGGTCACTGG ACATTTCTAAGTTCAGCAGCTATAATGAGCTGCGCAGTGAGCTCGCTCGTATATTTTGCCTTGAAGGCCAACTAGAGGGA CCCCAAGACTCAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAAAATGACATTCTTCTTCTTGGTGATGATCTCTGG AAGGAGTTTGTGAACAATGTGTCTTACATCAAGATACTATCTCCACTAGAAGTGCAAGAAATGAGCAGAAGCGTTGCTAC TTTCTACTTCTTCCCTTGGTCACACAAACTTTCTAATGATGGCAACTCTTGTGATAATTGTGAGTCAACAAGAGTTGAGA AGTTTGATAAACGGCATGGCGCCAATAGGTTCTTTTCAGTACTTGGACTTTCTGCTTCTAAGTAATTTTAGTTGGAAAAT TATGTTGGCAGAACAGAATCTTCATGACGTTTATGTATGGGTTGGTCCAGCATTTTTATACACATTAATGGTTGAGATGT AGTGATTGCAACTGAAAATGGGGAACTTCTGTGTAGCTCCATTTGTCTTGTATACTCACCAAAGTTATATCCATCATAAT TAACAGAGATTGTACTGGGCCAAAAAACAAAATCAAAACATGCACTCATATATCTGCAAGTACTAATCCCTGTGCACCAT GTTGGTTAAATTAGTGTAGA
CDS sequence (LotjaGi6g1v0047900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACCGAGTTTTCATGAAAAAGGGGCTGCTACCAGCATTGGGTGCCCACATTGTGAACTTGCTAAGCACAAGCAA ACAACACTGCGGTGTTTCCATAGTGGTTCGATCGAAAACGACGTCTGCCCAGTACGTGGCTGCGAGAGCTCGAGATGCCA CGTTTGAGAAGCTCATGGACAAGTACAAAAACCTTCTCAAAGTCATCGCGGTTCAAGACCTTATCCTCGCTAACCCCAAG AACCCATCAGTCTCTATTGATTTCCTCTCCAGGCTCTCCCAGAAGCTCCACCTCAACCGCGGAGCCACTGCCTTCCTCCG CAAGTATCCTCACATCTTCCACATTTACTATGAGCCCTCCAAGTTGCAACCCTATTGCAGGTTGACTGATGCTGCTCTTG ATGTATCGCGGAAGGAAGCGGAGGCCATTAATGCTTCTATGCCAGTTGTTGTTGACAGACTTGTTCGGATACTGTCCATG TCTGCATCCAAAATGGTTCCACTTCGAGCTATTTTCAAGGTTTGGAGAGAGCTTGGCCTACCTGATGATTTTGAGGATTC GGTTATATCTGCTAATTCTAGTGTTTTTCAGCTGTGTGATGGGCATGAACTAAATACTCATTTGTTGAAGTTGGTTGGTG ATCTTCCCAGTGATGGTTTTAGAGCGACTGTTGAGGATTGGAGGCTGGTTGAGTGCTGTAAGGAGGACAGCAGTGTTGAT AGGATGGAAATGCGGTTCAGTTTCAAACATGGGTATCCTCCAGGGATGAGGTTGACCAAGACTTTCAGGGCCAATGTGAA GGAATGGCAGAGTTTGCCTTATGTGGGGCCTTATGAGGTGGTGAGTGAGAAGAAGAAGTCTAAGGCTGGGATGATGGCAA TGGAGAAACGAGCGGTGGCAATTGTTCATGAATTCTTGAGTTTGACAGTGGAGAAGATGGTGGAAGTTGAGAAGATCAGC CAGTTTAGGAATTGGTTTGGGATTGATTTAAATATAAGGGATCTGTTCCTGGATCACCCAGGGATCTTCTATTTGTCAAC TAAGGGGAAACGCCACACTGTTTTCCTGAGGGAAGCTTATGAGCGGGGTTGTTTGATCCAACCAAATCCTGTTTATGATG CAAGGAGAAAACTACTTGATCTTGTTCTTCTTGAACGTAGGGGTCTGCCTGCTCTTAATTCCAACTTGCAGGATAGAAGC AGTAACAATGAGGAGGACAATCAGCAAACACATGACTCTTTATCATCTTGA
Protein sequence (LotjaGi6g1v0047900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNRVFMKKGLLPALGAHIVNLLSTSKQHCGVSIVVRSKTTSAQYVAARARDATFEKLMDKYKNLLKVIAVQDLILANPK NPSVSIDFLSRLSQKLHLNRGATAFLRKYPHIFHIYYEPSKLQPYCRLTDAALDVSRKEAEAINASMPVVVDRLVRILSM SASKMVPLRAIFKVWRELGLPDDFEDSVISANSSVFQLCDGHELNTHLLKLVGDLPSDGFRATVEDWRLVECCKEDSSVD RMEMRFSFKHGYPPGMRLTKTFRANVKEWQSLPYVGPYEVVSEKKKSKAGMMAMEKRAVAIVHEFLSLTVEKMVEVEKIS QFRNWFGIDLNIRDLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIQPNPVYDARRKLLDLVLLERRGLPALNSNLQDRS SNNEEDNQQTHDSLSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 416 | 391 | - | – | |
| PANTHER | 33 | 410 | 378 | 2.1E-201 | – | |
| PANTHER | 33 | 410 | 378 | 2.1E-201 | – | |
| Pfam | 51 | 386 | 336 | 5.4E-110 | ||
| MobiDBLite | 394 | 416 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0047900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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