Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi6g1v0048100.1

Overview

Field Value
Gene ID LotjaGi6g1v0048100
Transcript ID LotjaGi6g1v0048100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Yellow stripe-like transporter 12; TAIR: AT1G65730.1 YELLOW STRIPE like 7; Swiss-Prot: sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7; TrEMBL-Plants: tr|G7KD70|G7KD70_MEDTR OPT family oligopeptide transporter; Found in the gene: LotjaGi6g1v0048100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:8793259..8800026) extracted from Lotus japonicus Gifu genome v1.2.

TTTGGGTAAATAGCCAAGTTCATCCCTGAATGTGTCCACCGACTTCACATTCGTCCTTGAATGAATTTTATTCATCTCGC GGTCCCCCAAAGTGGCAAACGTCCGTCACTTTAGTCCTTGACGTTAAAAAACACTAACAGACGTTACCAAATTCATTTTT TTAAAACTGAAAAATCATTTAAGTAAATTAGAATAACAATTGAACTAAAATCTAATTAATTAAAACAGAAAAAAAAATTC TTAATGTGAACCACTGGTCTTCATCTCCTTCTTCTTCTCATCATCTTCTTCTTCATCTTCACAAATCCTTCCACCACAAC CCAATTCCCCACCACAAACCTTCCAACATCATTAAAATAATGCATTCCTGGAAAAAATAATAATAATGCATTCCTGAATT CAGATCCAATGTCAGCTTGGATCAGAACATGTTCCCAACCAGAACCCAACCCCCCCCCTCCCCCAACAAAATCCCACAAC AGCAACAAATCAAGCACGAAATTGAACATAAGAAAGTGAAAATTGCCACAGATCCATCCACTTTTCACACAAATCAAAAA AAAAAACCCAACAATCACAAAATAGAAACCCCATCACACAACATGTTTGGGAGCTGGAGCAAACGAAGCAAGGAGAAGGA GTGGTTGAGAGAGAGAAAGAAAACCACGATCTGGATCTGGCGGCTCAATCGCTGACTGCATGGAAGATGGTCCGTCTTCC CCAAGCCCAACCTTCTTCTCTTCCCCTCTCCTTCCTTCACGTGGCCGCTTAGGGTTCTTCGCCGCCCCAACACTATCACC GCCACCATATCTGAACCCGAGGTCGAAGTGTTTGGAGGCGTGAGGTTCACGTTCAGCGTCCAGGTTCGATCCTTCATCTC TCTTGTTCTTGATCCCCCTCTGGTTCTTGGAGGGGCGGTGCCAGATTTATCATGAAAGGGAGAGCTAGGGTTCATTGTGG GTATGAGAATGATGAAACACATACGGGTCTGGTGATGATTTATCGTTAAGCTTCCTGTTCCCTTGATCTGGTTTTGCTTT GAAATTGGATTCTGACCTGGATTTTGAGTTTTGGTGGAGGAGGAAGAAGAGGTTGGGGATATGGGGGTTATGAGATTGTG GAGATTGGGGTTGTTGTGTTTCAGTAAAAAAATTGGGTGGGTTATGAAGAAAAGATGAAGAAGCAGATGCAGATGGTGAT TTTTTTAGATGAAAAATTGGGTTATGATAAAAAACTGGGTTATGATGCAAAGATGAAGAAAAAAGGAGTAAGCTGAAGAA GATGAGAAGGAGATTAGGATTTTGTGTTTTAAATTTTTAATTAATCAATTTTTTAGTTAATTTGTTTTTTTAAATTTAAA TTAATGATTTTCACATGGGTAAAAAAATATAAAAAATGAATATGTTAACGTCTGTTAGTGTTTTTTAACGTCAAGGACTA AAGTGACAGACATTTGTCACTTTGGGGGACCGCGAGATGAATAAAATTCATTCAAGGACGAATGTGAAGTCGGTGGACAC ATTCAGGGACGAACTTGGCTATTTACCCGTGAAGATTTGGTTTTGGCTGGCACGTAAGTCCTAACGCGAAATCTTTGGTA GAAACCATAATCAGTTATTACTAATTAATGACGCAAGATGGAAAACACTATTGTTGGCGTAAACAACAGCTAAGATGAAG AATCAAAACTCTCCATTCCCCGATTCTCCTTTCAAATTCATTATCACTACAATTAATTCATTTTATTCTTGCTAATTCTT ACCATAATCATCATCAATACAGTTGTACATTTTCACCATAATAAATACCAAACAAAACCTCTAAATCATTCTATAGAATT CAAACACAGAGAAACTGAAATTGTGAAAAACAATCAACATTCAATGGCTTCGGGAGGAGGCAACCGCAACCGTCCCGATG GCGACGACGTGGAAGGGAGCGGCGACGACGAGTTGGCGGTGGAGTCGGTGGAGAAGGCGTTTGAGTCCAAGGCGGTGCCG TCGTGGCAGAGGCAAGTCACGGTGAGGGCGTTGGTGGCGAGTTTGGTGTTGTCGGTGATGTTTACGTTTATCGTCATGAA GCTGAGTCTCACCACCGGTATCATTCCTTCTCTCAATGTCTCCGCGGGGTTGCTAGGGTTCTTCTTCGTCAAGACGTGGA CCGCGCTGCTTGCGAAATCAGGGTTCCTCAACCAGCCTTTCACTCGCCAGGAGAATACGGTTATTCAGACGTGTGTCGTC GCCTCCAGCGGCATTGCCTTCAGCGGTAACCACCACCACCACCTTCTTCTCCGTGCTTTCAATTTGTTGCATGATTTTAG AGTAAATTTCAATTTCAATTTCAATTCCTCTATGAATGATGAATTCAGTAACAGAATGTAGAAATCATGAAATTGAGTAG TTAGGTGGTTCAATTTCTGGAAATTGGGTAGATTGAAGGATGAATTTATTGGGGTTTTTGGGTATTGAGATTCATTTGCA TGCGTTTCCTCGTGCGGTGTATCATGGGGGTGGGTCCCGTTGTGATTCTGATGAGCTTTTCTTTTACTTTTAATTTTAAG TGGCAATTTGTTTTCCGTCTTTGATGGATGTCGTCACACCTTCGGATAGGGTTGCATGTTTCTAACAAAAAAACGTGTCG TTCCCAGATTTTAGCTTGTGCTGCTCTCATCCTTACTAGGTGGGGGCCTAGTTTGCTTACAACTAAACCAGCACCTTATT GTTTAAGTGGCGAATTTTGAAAAAATGGATAAATAAAAATGATTTTTTTTAGAATGGAAAAATAGGGCTGGTTGGAGGTA ATGTACTTTATGTGACCACTAACTAAAGTTGGGCAGTAGCAAATGTCCTTTTTTATGGTAATCATACCATGTGCATGTTT AAGGGTTAGTTTACTTTATATTATAAGTAATATAATTATTAAATAGTACTTTTTAATTTTAAAGGTCAACCTAGTAGTAG TACCAACACCTTTGACTACCTTGGCCATATATATAGGTGCGTGTCTGTCAGTCTCTCTGCTTTCCGTGGTATTAAGATAA TGATGAAAAAGACAGGGAGGGGGCCAAAAAAAAATTCCATAAGTTTTTGAGGAAGAAAAAACAAGGGAAAAAATTCCACA GAGCTTGTGGCTGTTATGAAGTTTATAATACAGTTTTTCACTTTTAAAAACACTTCCTCAGTTTATTTAATGATGAATGA AATCTCTGGAGTTTTAGTGCCTTAGAAATGAATTATTACTGAGTACTGAAGTTGTGGGGATTTTGGATCTTCTACAATAA ACTGTCCATCTTTCTGATTACATTTATTGTCATACATTATATTGTTGTTTTAATAGGATTTGAGAAGAATGCTATGGCTG AAATTATATATAGAAAATGCTCAAATAATTGACTGCAATTCTGATGCAAGAATCATTTATGTTGTTGACACATCTTTGAC TGGATTTGCTTGAGTAGGTGGCTTTGGAAGCTACTTGTTTGCAATGAGTCCAGAAATTGCAAAACAATCTTCAGAAGCTA ACACTGCAATGGACATGAAGATCCCGGGCTTAGGATGGATGGTTGCATTTCTATTCGTTGTTAGCTTTCTTGGCCTCTTT TCAGTGGTTCCGCTTCGGAAGGTACACGAATATAATGGGATCAAGTAATGCATAATGTATTAATGGGGAAAGGCTATGGG GAAAAAAAACCAATTAGCTATTCATTGTAATATTTGCTTCCATTGCATATAAACTCTTTGGTTACTGATGTTGAATTAAC TTTTGTTTAATGTTCCTTGTTACAGATTATGATAGTAGACTTCAAATTGACATATCCCAGTGGTACCGCAACAGCTCATC TGATCAACAGTTTCCATACAACAGAGGGTGCCAGACTAGCAAAGTAAGGATTCAGGCTTGCTGGAGTTTCTTTTTCTTGA TAAATACATCAATTACGCGCTCCTAATTTCCTTTTGATTCTTTCTTTTAGGAAGAAAGTACACGCCTTGGGAAAGTTCTT CTCCTTTAGCTTCTTTTGGGCTTTCTTTCAATGGTTTTTCACTGCTGGTGATGGCTGCGGATTTGAAAACTTCCCTACAT TTGGTCTAGAAGCCTATAAAAACCAGTATGTGTCCACTTATATTAAAACTGGTTTATAAGTCTATATATGCATTTAGCTT CACTTCTTTTCTGATTTATTATCTTCATAACAGGTTCTACTTCAGTTTTTCGGCTACCTATGTGGGGGTTGGGATGATAT GCCCATATATAATCAATATATCCCTTCTGGTTGGTGGAATTCTGTCATGGGGTGTCATGTGGCCTCTCATCGATGCTAGA AAAGGAGACTGGTACTCTGCTGAACTCAAGTCAAGCAGCTTACATGGTCTTCAAGGTTACAAAGTAAGATGATTTTCAAC ATTTAAAAATGTCAAAAAATGTGCTTATTAATATCAAATAGCTGAATTGCAGTTATTGGAGCAACTAGGTACATGGACAA TGTCCGTTCAGATTAATATTATTGAGGATAAGTTTAGCTAATATGTAGCTATATTTCTTTAAGATCAAAATTGTGCTTCA GTTAACTATCATTTGCCTAACAGAGGTAAAAAGTAAAAAAATTCATCTCATGCAGTCACCTGAGAGTCTGAGACAACATC ATTTTCAATGTATTGATGGTTAGAATTTGGAATTAAATTGACTATATTTTTCACATAATTTGCGAAAATGAATTTAATTG ATTAGAATCAGAAGTTGGTTCGAAGCTGTAGTTAACTATCATTTCCTATAATGTGTTCAGGAATCATTCCTATATCTTGT CTAAATTACCATTCAGTACTCAGGGTTTGTCTTTGTCTTATCAATCTCATGCAATGTATGCTTTCAAGTGAATAGTGAAC TTTGTGTAACACTGACTGGTCAAGTGTCTCAAGGGTTCTGTGATATATTAGGCATTTCTTTTGAGATATTGCATGAACTT AGTGCTGGTATTCTATTAGGGATCTTTCTTATAAAGTTAATGTGATTTAATTTTTTTTATGGATTCAGGTTTTAGTCAGA CCTTGTAATAATAAACAAGATTCATTTACAAAATTAAGATTAAAGAAAGAGCCAGCACAGGAATGCACTGTAGTAAAGTG CAGCCATAATTTGGATTGTGTTGTTTACTTTGTGACTTTTATTTATTTGGACTGAGTTATTTAGTTTGTATTGATAATCT GAAGTCAATAGGAGATTTGTTGATGGAATGTAATAGTCAGTGTGCCCACTATTTGGTTCTAGTGTGATTTATTGATAGTT TCTTCCTTTCGTACTCTGAATGATATTGTGACTAGTTAAGAAACATCTCACAGTTGATTGATCTTATTAACTCATACTTC AAACTGCAGATTTTCATAGGCATTGCGATGATTCTCGGGGACGGTCTATACAACTTTGTCAAGGTTCTTGCTCGCACACT TTTTGGTATCTATCAACAGGTCTGCAAAAAAGACTTGGGCACAGTTTCAAACTCAGATGTCCCACCTCCATCACTTTCCT ATGACGAGAAGCGCAGAACCGAGGTGTTCCTCAAGGACCAAATCCCTGCCTGGTTCTCCATTGCTGGATATGTTAGCATT GGAATAGTCTCCACCATTATTCTCCCCCACATTTTCCACCAGCTGAAGTGGTACTACATTATTGTGATTTACATCATTGC ACCACCACTAGCATTTTGCAATGCCTATGGGTGTGGACTCACAGACTGGTCCCTTGCAACCACCTATGGAAAATTGGCCA TCTTCACCATTGGTGCATGGGCTGGGGCAAATAATGGCGGGGTTCTCGCTGGTTTGGCGGCATGTGGTGTCATGATGAAC ATTGTGTCCACAGCATCTGATTTAATGCAGGACTTCAAAACAGGTTACATGACACTGGCTTCACCAAGGTCCATGTTTGT GAGCCAAGTTGCCGGAACCGCCATGGGTTGTGTTATATCCCCTTGTGTCTTCTGGCTTTTCTACAAGGCCTTTGGTAACA TTGGACTTCCTGGCTCACCATACCCTGCTCCTTATGCGCTTGTTTACCGCAACATGTCAATTTTGGGGGTGGATGGATTC TCAGCTCTGCCGAAAAACTGCCTCACACTTTGCTATGCGTTTTTCGCAGCCGCCATAATCATCAACCTCATTCGAGATTT GGCTGGAAAGAAGTGGGCTAGATTTATTCCTGTTCCTATGGCCATGGCAATACCGTTTTATATTGGAAGCTATTTTGCCA TTGATATGTGTCTTGGCAGCTTGATCTTGTTTATCTGGACGAAGCTTGACAGGGCTAAGGCTGAAGCATTTGGATCAGCT GTAGCTTCTGGTTTGATCTGTGGGGATGGAATCTGGGCACTTCCTAGCTCATTTCTGGCTCTTGCAGGAGTGAGGCCACC TATCTGCATGAAGTTTCTGTCCAGAGCAGTAAATGGTAAGGTGGATGCATTGTTAGAATCTTAACTACATCTTAATCTTA ATGCATGTTTGGACACACAACGAAGGAGAATTTATTCTGGAAGAAGCTCTTCTAGTACCTTTTGTGGAAGTAGAATTGAT TCTGGAAGATATGAACGTGAATCCAATTATTAAATTTGACTTCTACCTTGTTACAGCAACTATATGCTACATGTACATAC TTTTACCTCATTAGTCACTGACCTATCCAATGATATTAGTCAATCAAGATTATATTCAAGTAAAACAATCTCTATCGTTT ACATATGGTTATAACTTATAAACACTGTTTGAATATCCGTTTGGCCAG 

CDS sequence (LotjaGi6g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTTCGGGAGGAGGCAACCGCAACCGTCCCGATGGCGACGACGTGGAAGGGAGCGGCGACGACGAGTTGGCGGTGGA GTCGGTGGAGAAGGCGTTTGAGTCCAAGGCGGTGCCGTCGTGGCAGAGGCAAGTCACGGTGAGGGCGTTGGTGGCGAGTT TGGTGTTGTCGGTGATGTTTACGTTTATCGTCATGAAGCTGAGTCTCACCACCGGTATCATTCCTTCTCTCAATGTCTCC GCGGGGTTGCTAGGGTTCTTCTTCGTCAAGACGTGGACCGCGCTGCTTGCGAAATCAGGGTTCCTCAACCAGCCTTTCAC TCGCCAGGAGAATACGGTTATTCAGACGTGTGTCGTCGCCTCCAGCGGCATTGCCTTCAGCGGTGGCTTTGGAAGCTACT TGTTTGCAATGAGTCCAGAAATTGCAAAACAATCTTCAGAAGCTAACACTGCAATGGACATGAAGATCCCGGGCTTAGGA TGGATGGTTGCATTTCTATTCGTTGTTAGCTTTCTTGGCCTCTTTTCAGTGGTTCCGCTTCGGAAGATTATGATAGTAGA CTTCAAATTGACATATCCCAGTGGTACCGCAACAGCTCATCTGATCAACAGTTTCCATACAACAGAGGGTGCCAGACTAG CAAAGAAGAAAGTACACGCCTTGGGAAAGTTCTTCTCCTTTAGCTTCTTTTGGGCTTTCTTTCAATGGTTTTTCACTGCT GGTGATGGCTGCGGATTTGAAAACTTCCCTACATTTGGTCTAGAAGCCTATAAAAACCAGTTCTACTTCAGTTTTTCGGC TACCTATGTGGGGGTTGGGATGATATGCCCATATATAATCAATATATCCCTTCTGGTTGGTGGAATTCTGTCATGGGGTG TCATGTGGCCTCTCATCGATGCTAGAAAAGGAGACTGGTACTCTGCTGAACTCAAGTCAAGCAGCTTACATGGTCTTCAA GGTTACAAAATTTTCATAGGCATTGCGATGATTCTCGGGGACGGTCTATACAACTTTGTCAAGGTTCTTGCTCGCACACT TTTTGGTATCTATCAACAGGTCTGCAAAAAAGACTTGGGCACAGTTTCAAACTCAGATGTCCCACCTCCATCACTTTCCT ATGACGAGAAGCGCAGAACCGAGGTGTTCCTCAAGGACCAAATCCCTGCCTGGTTCTCCATTGCTGGATATGTTAGCATT GGAATAGTCTCCACCATTATTCTCCCCCACATTTTCCACCAGCTGAAGTGGTACTACATTATTGTGATTTACATCATTGC ACCACCACTAGCATTTTGCAATGCCTATGGGTGTGGACTCACAGACTGGTCCCTTGCAACCACCTATGGAAAATTGGCCA TCTTCACCATTGGTGCATGGGCTGGGGCAAATAATGGCGGGGTTCTCGCTGGTTTGGCGGCATGTGGTGTCATGATGAAC ATTGTGTCCACAGCATCTGATTTAATGCAGGACTTCAAAACAGGTTACATGACACTGGCTTCACCAAGGTCCATGTTTGT GAGCCAAGTTGCCGGAACCGCCATGGGTTGTGTTATATCCCCTTGTGTCTTCTGGCTTTTCTACAAGGCCTTTGGTAACA TTGGACTTCCTGGCTCACCATACCCTGCTCCTTATGCGCTTGTTTACCGCAACATGTCAATTTTGGGGGTGGATGGATTC TCAGCTCTGCCGAAAAACTGCCTCACACTTTGCTATGCGTTTTTCGCAGCCGCCATAATCATCAACCTCATTCGAGATTT GGCTGGAAAGAAGTGGGCTAGATTTATTCCTGTTCCTATGGCCATGGCAATACCGTTTTATATTGGAAGCTATTTTGCCA TTGATATGTGTCTTGGCAGCTTGATCTTGTTTATCTGGACGAAGCTTGACAGGGCTAAGGCTGAAGCATTTGGATCAGCT GTAGCTTCTGGTTTGATCTGTGGGGATGGAATCTGGGCACTTCCTAGCTCATTTCTGGCTCTTGCAGGAGTGAGGCCACC TATCTGCATGAAGTTTCTGTCCAGAGCAGTAAATGGTAAGGTGGATGCATTGTTAGAATCTTAA 

Protein sequence (LotjaGi6g1v0048100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASGGGNRNRPDGDDVEGSGDDELAVESVEKAFESKAVPSWQRQVTVRALVASLVLSVMFTFIVMKLSLTTGIIPSLNVS AGLLGFFFVKTWTALLAKSGFLNQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFAMSPEIAKQSSEANTAMDMKIPGLG WMVAFLFVVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTTEGARLAKKKVHALGKFFSFSFFWAFFQWFFTA GDGCGFENFPTFGLEAYKNQFYFSFSATYVGVGMICPYIINISLLVGGILSWGVMWPLIDARKGDWYSAELKSSSLHGLQ GYKIFIGIAMILGDGLYNFVKVLARTLFGIYQQVCKKDLGTVSNSDVPPPSLSYDEKRRTEVFLKDQIPAWFSIAGYVSI GIVSTIILPHIFHQLKWYYIIVIYIIAPPLAFCNAYGCGLTDWSLATTYGKLAIFTIGAWAGANNGGVLAGLAACGVMMN IVSTASDLMQDFKTGYMTLASPRSMFVSQVAGTAMGCVISPCVFWLFYKAFGNIGLPGSPYPAPYALVYRNMSILGVDGF SALPKNCLTLCYAFFAAAIIINLIRDLAGKKWARFIPVPMAMAIPFYIGSYFAIDMCLGSLILFIWTKLDRAKAEAFGSA VASGLICGDGIWALPSSFLALAGVRPPICMKFLSRAVNGKVDALLES 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 44 44 -
MobiDBLite 1 21 21 -
PANTHER 21 683 663 0.0
PANTHER 21 683 663 0.0
TIGRFAM 40 661 622 2.5E-113
Pfam 44 660 617 6.1E-150
Phobius 45 65 21 -
TMHMM 45 64 20 -
Phobius 66 76 11 -
TMHMM 74 96 23 -
Phobius 77 97 21 -
Phobius 98 117 20 -
TMHMM 116 138 23 -
Phobius 118 138 21 -
Phobius 139 157 19 -
Phobius 158 180 23 -
TMHMM 158 180 23 -
Phobius 181 219 39 -
TMHMM 218 240 23 -
Phobius 220 239 20 -
Phobius 240 258 19 -
Phobius 259 275 17 -
TMHMM 272 294 23 -
Phobius 276 281 6 -
Phobius 282 299 18 -
Phobius 300 318 19 -
TMHMM 315 337 23 -
Phobius 319 340 22 -
Phobius 341 387 47 -
Phobius 388 411 24 -
TMHMM 390 412 23 -
Phobius 412 416 5 -
Phobius 417 436 20 -
TMHMM 417 439 23 -
Phobius 437 442 6 -
Phobius 443 461 19 -
TMHMM 454 476 23 -
Phobius 462 466 5 -
Phobius 467 485 19 -
Phobius 486 505 20 -
TMHMM 506 528 23 -
Phobius 506 528 23 -
Phobius 529 561 33 -
Phobius 562 584 23 -
TMHMM 562 584 23 -
Phobius 585 603 19 -
TMHMM 604 626 23 -
Phobius 604 626 23 -
Phobius 627 637 11 -
Phobius 638 664 27 -
TMHMM 641 663 23 -
Phobius 665 687 23 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0048100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…