Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0048100 |
| Transcript ID | LotjaGi6g1v0048100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Yellow stripe-like transporter 12; TAIR: AT1G65730.1 YELLOW STRIPE like 7; Swiss-Prot: sp|Q9SHY2|YSL7_ARATH Probable metal-nicotianamine transporter YSL7; TrEMBL-Plants: tr|A0A1J7IGQ6|A0A1J7IGQ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0048100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:8793563..8796543) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGTCCAGAAATTGCAAAACAATCTTCAGAAGCTAACACTGCAATGGACATGAAGATCCCGGGCTTAGGATGGATGGT TGCATTTCTATTCGTTGTTAGCTTTCTTGGCCTCTTTTCAGTGGTTCCGCTTCGGAAGGTACACGAATATAATGGGATCA AGTAATGCATAATGTATTAATGGGGAAAGGCTATGGGGAAAAAAAACCAATTAGCTATTCATTGTAATATTTGCTTCCAT TGCATATAAACTCTTTGGTTACTGATGTTGAATTAACTTTTGTTTAATGTTCCTTGTTACAGATTATGATAGTAGACTTC AAATTGACATATCCCAGTGGTACCGCAACAGCTCATCTGATCAACAGTTTCCATACAACAGAGGGTGCCAGACTAGCAAA GTAAGGATTCAGGCTTGCTGGAGTTTCTTTTTCTTGATAAATACATCAATTACGCGCTCCTAATTTCCTTTTGATTCTTT CTTTTAGGAAGAAAGTACACGCCTTGGGAAAGTTCTTCTCCTTTAGCTTCTTTTGGGCTTTCTTTCAATGGTTTTTCACT GCTGGTGATGGCTGCGGATTTGAAAACTTCCCTACATTTGGTCTAGAAGCCTATAAAAACCAGTATGTGTCCACTTATAT TAAAACTGGTTTATAAGTCTATATATGCATTTAGCTTCACTTCTTTTCTGATTTATTATCTTCATAACAGGTTCTACTTC AGTTTTTCGGCTACCTATGTGGGGGTTGGGATGATATGCCCATATATAATCAATATATCCCTTCTGGTTGGTGGAATTCT GTCATGGGGTGTCATGTGGCCTCTCATCGATGCTAGAAAAGGAGACTGGTACTCTGCTGAACTCAAGTCAAGCAGCTTAC ATGGTCTTCAAGGTTACAAAGTAAGATGATTTTCAACATTTAAAAATGTCAAAAAATGTGCTTATTAATATCAAATAGCT GAATTGCAGTTATTGGAGCAACTAGGTACATGGACAATGTCCGTTCAGATTAATATTATTGAGGATAAGTTTAGCTAATA TGTAGCTATATTTCTTTAAGATCAAAATTGTGCTTCAGTTAACTATCATTTGCCTAACAGAGGTAAAAAGTAAAAAAATT CATCTCATGCAGTCACCTGAGAGTCTGAGACAACATCATTTTCAATGTATTGATGGTTAGAATTTGGAATTAAATTGACT ATATTTTTCACATAATTTGCGAAAATGAATTTAATTGATTAGAATCAGAAGTTGGTTCGAAGCTGTAGTTAACTATCATT TCCTATAATGTGTTCAGGAATCATTCCTATATCTTGTCTAAATTACCATTCAGTACTCAGGGTTTGTCTTTGTCTTATCA ATCTCATGCAATGTATGCTTTCAAGTGAATAGTGAACTTTGTGTAACACTGACTGGTCAAGTGTCTCAAGGGTTCTGTGA TATATTAGGCATTTCTTTTGAGATATTGCATGAACTTAGTGCTGGTATTCTATTAGGGATCTTTCTTATAAAGTTAATGT GATTTAATTTTTTTTATGGATTCAGGTTTTAGTCAGACCTTGTAATAATAAACAAGATTCATTTACAAAATTAAGATTAA AGAAAGAGCCAGCACAGGAATGCACTGTAGTAAAGTGCAGCCATAATTTGGATTGTGTTGTTTACTTTGTGACTTTTATT TATTTGGACTGAGTTATTTAGTTTGTATTGATAATCTGAAGTCAATAGGAGATTTGTTGATGGAATGTAATAGTCAGTGT GCCCACTATTTGGTTCTAGTGTGATTTATTGATAGTTTCTTCCTTTCGTACTCTGAATGATATTGTGACTAGTTAAGAAA CATCTCACAGTTGATTGATCTTATTAACTCATACTTCAAACTGCAGATTTTCATAGGCATTGCGATGATTCTCGGGGACG GTCTATACAACTTTGTCAAGGTTCTTGCTCGCACACTTTTTGGTATCTATCAACAGGTCTGCAAAAAAGACTTGGGCACA GTTTCAAACTCAGATGTCCCACCTCCATCACTTTCCTATGACGAGAAGCGCAGAACCGAGGTGTTCCTCAAGGACCAAAT CCCTGCCTGGTTCTCCATTGCTGGATATGTTAGCATTGGAATAGTCTCCACCATTATTCTCCCCCACATTTTCCACCAGC TGAAGTGGTACTACATTATTGTGATTTACATCATTGCACCACCACTAGCATTTTGCAATGCCTATGGGTGTGGACTCACA GACTGGTCCCTTGCAACCACCTATGGAAAATTGGCCATCTTCACCATTGGTGCATGGGCTGGGGCAAATAATGGCGGGGT TCTCGCTGGTTTGGCGGCATGTGGTGTCATGATGAACATTGTGTCCACAGCATCTGATTTAATGCAGGACTTCAAAACAG GTTACATGACACTGGCTTCACCAAGGTCCATGTTTGTGAGCCAAGTTGCCGGAACCGCCATGGGTTGTGTTATATCCCCT TGTGTCTTCTGGCTTTTCTACAAGGCCTTTGGTAACATTGGACTTCCTGGCTCACCATACCCTGCTCCTTATGCGCTTGT TTACCGCAACATGTCAATTTTGGGGGTGGATGGATTCTCAGCTCTGCCGAAAAACTGCCTCACACTTTGCTATGCGTTTT TCGCAGCCGCCATAATCATCAACCTCATTCGAGATTTGGCTGGAAAGAAGTGGGCTAGATTTATTCCTGTTCCTATGGCC ATGGCAATACCGTTTTATATTGGAAGCTATTTTGCCATTGATATGTGTCTTGGCAGCTTGATCTTGTTTATCTGGACGAA GCTTGACAGGGCTAAGGCTGAAGCATTTGGATCAGCTGTAGCTTCTGGTTTGATCTGTGGGGATGGAATCTGGGCACTTC CTAGCTCATTTCTGGCTCTTGCAGGAGTGAGGCCACCTATCTGCATGAAGTTTCTGTCCAGAGCAGTAAATGGTAAGGTG GATGCATTGTTAGAATCTTAA
CDS sequence (LotjaGi6g1v0048100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTCCAGAAATTGCAAAACAATCTTCAGAAGCTAACACTGCAATGGACATGAAGATCCCGGGCTTAGGATGGATGGT TGCATTTCTATTCGTTGTTAGCTTTCTTGGCCTCTTTTCAGTGGTTCCGCTTCGGAAGATTATGATAGTAGACTTCAAAT TGACATATCCCAGTGGTACCGCAACAGCTCATCTGATCAACAGTTTCCATACAACAGAGGGTGCCAGACTAGCAAAGAAG AAAGTACACGCCTTGGGAAAGTTCTTCTCCTTTAGCTTCTTTTGGGCTTTCTTTCAATGGTTTTTCACTGCTGGTGATGG CTGCGGATTTGAAAACTTCCCTACATTTGGTCTAGAAGCCTATAAAAACCAGTTCTACTTCAGTTTTTCGGCTACCTATG TGGGGGTTGGGATGATATGCCCATATATAATCAATATATCCCTTCTGGTTGGTGGAATTCTGTCATGGGGTGTCATGTGG CCTCTCATCGATGCTAGAAAAGGAGACTGGTACTCTGCTGAACTCAAGTCAAGCAGCTTACATGGTCTTCAAGGTTACAA AATTTTCATAGGCATTGCGATGATTCTCGGGGACGGTCTATACAACTTTGTCAAGGTTCTTGCTCGCACACTTTTTGGTA TCTATCAACAGGTCTGCAAAAAAGACTTGGGCACAGTTTCAAACTCAGATGTCCCACCTCCATCACTTTCCTATGACGAG AAGCGCAGAACCGAGGTGTTCCTCAAGGACCAAATCCCTGCCTGGTTCTCCATTGCTGGATATGTTAGCATTGGAATAGT CTCCACCATTATTCTCCCCCACATTTTCCACCAGCTGAAGTGGTACTACATTATTGTGATTTACATCATTGCACCACCAC TAGCATTTTGCAATGCCTATGGGTGTGGACTCACAGACTGGTCCCTTGCAACCACCTATGGAAAATTGGCCATCTTCACC ATTGGTGCATGGGCTGGGGCAAATAATGGCGGGGTTCTCGCTGGTTTGGCGGCATGTGGTGTCATGATGAACATTGTGTC CACAGCATCTGATTTAATGCAGGACTTCAAAACAGGTTACATGACACTGGCTTCACCAAGGTCCATGTTTGTGAGCCAAG TTGCCGGAACCGCCATGGGTTGTGTTATATCCCCTTGTGTCTTCTGGCTTTTCTACAAGGCCTTTGGTAACATTGGACTT CCTGGCTCACCATACCCTGCTCCTTATGCGCTTGTTTACCGCAACATGTCAATTTTGGGGGTGGATGGATTCTCAGCTCT GCCGAAAAACTGCCTCACACTTTGCTATGCGTTTTTCGCAGCCGCCATAATCATCAACCTCATTCGAGATTTGGCTGGAA AGAAGTGGGCTAGATTTATTCCTGTTCCTATGGCCATGGCAATACCGTTTTATATTGGAAGCTATTTTGCCATTGATATG TGTCTTGGCAGCTTGATCTTGTTTATCTGGACGAAGCTTGACAGGGCTAAGGCTGAAGCATTTGGATCAGCTGTAGCTTC TGGTTTGATCTGTGGGGATGGAATCTGGGCACTTCCTAGCTCATTTCTGGCTCTTGCAGGAGTGAGGCCACCTATCTGCA TGAAGTTTCTGTCCAGAGCAGTAAATGGTAAGGTGGATGCATTGTTAGAATCTTAA
Protein sequence (LotjaGi6g1v0048100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSPEIAKQSSEANTAMDMKIPGLGWMVAFLFVVSFLGLFSVVPLRKIMIVDFKLTYPSGTATAHLINSFHTTEGARLAKK KVHALGKFFSFSFFWAFFQWFFTAGDGCGFENFPTFGLEAYKNQFYFSFSATYVGVGMICPYIINISLLVGGILSWGVMW PLIDARKGDWYSAELKSSSLHGLQGYKIFIGIAMILGDGLYNFVKVLARTLFGIYQQVCKKDLGTVSNSDVPPPSLSYDE KRRTEVFLKDQIPAWFSIAGYVSIGIVSTIILPHIFHQLKWYYIIVIYIIAPPLAFCNAYGCGLTDWSLATTYGKLAIFT IGAWAGANNGGVLAGLAACGVMMNIVSTASDLMQDFKTGYMTLASPRSMFVSQVAGTAMGCVISPCVFWLFYKAFGNIGL PGSPYPAPYALVYRNMSILGVDGFSALPKNCLTLCYAFFAAAIIINLIRDLAGKKWARFIPVPMAMAIPFYIGSYFAIDM CLGSLILFIWTKLDRAKAEAFGSAVASGLICGDGIWALPSSFLALAGVRPPICMKFLSRAVNGKVDALLES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 547 | 547 | 0.0 | – | |
| PANTHER | 1 | 547 | 547 | 0.0 | – | |
| Phobius | 1 | 22 | 22 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Pfam | 21 | 524 | 504 | 8.1E-125 | ||
| Phobius | 23 | 44 | 22 | - | – | |
| TIGRFAM | 24 | 525 | 502 | 9.8E-96 | ||
| Phobius | 45 | 83 | 39 | - | – | |
| TMHMM | 82 | 104 | 23 | - | – | |
| Phobius | 84 | 103 | 20 | - | – | |
| Phobius | 104 | 122 | 19 | - | – | |
| Phobius | 123 | 139 | 17 | - | – | |
| TMHMM | 136 | 158 | 23 | - | – | |
| Phobius | 140 | 145 | 6 | - | – | |
| Phobius | 146 | 163 | 18 | - | – | |
| Phobius | 164 | 182 | 19 | - | – | |
| TMHMM | 179 | 201 | 23 | - | – | |
| Phobius | 183 | 204 | 22 | - | – | |
| Phobius | 205 | 251 | 47 | - | – | |
| Phobius | 252 | 275 | 24 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 276 | 280 | 5 | - | – | |
| Phobius | 281 | 300 | 20 | - | – | |
| TMHMM | 281 | 303 | 23 | - | – | |
| Phobius | 301 | 306 | 6 | - | – | |
| Phobius | 307 | 325 | 19 | - | – | |
| TMHMM | 318 | 340 | 23 | - | – | |
| Phobius | 326 | 330 | 5 | - | – | |
| Phobius | 331 | 349 | 19 | - | – | |
| Phobius | 350 | 369 | 20 | - | – | |
| Phobius | 370 | 392 | 23 | - | – | |
| TMHMM | 370 | 392 | 23 | - | – | |
| Phobius | 393 | 425 | 33 | - | – | |
| Phobius | 426 | 448 | 23 | - | – | |
| TMHMM | 426 | 448 | 23 | - | – | |
| Phobius | 449 | 467 | 19 | - | – | |
| TMHMM | 468 | 490 | 23 | - | – | |
| Phobius | 468 | 490 | 23 | - | – | |
| Phobius | 491 | 501 | 11 | - | – | |
| Phobius | 502 | 528 | 27 | - | – | |
| TMHMM | 505 | 527 | 23 | - | – | |
| Phobius | 529 | 551 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi6g1v0048100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…