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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0056200 |
| Transcript ID | LotjaGi6g1v0056200.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase-like protein; TAIR: AT1G66250.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|Q9C7U5|E132_ARATH Glucan endo-1,3-beta-glucosidase 2; TrEMBL-Plants: tr|A0A151U9J9|A0A151U9J9_CAJCA Glucan endo-1,3-beta-glucosidase 2; Found in the gene: LotjaGi6g1v0056200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10231840..10233677) extracted from Lotus japonicus Gifu genome v1.2.
AAATACTCACATTTCACACAAGTAACTCAACACAAAAAATCTGGATTTAATTGAAAGTGGCAAAATGTGCAAAAGGCAAA CCTTGTGTTATTTGACTAGTGAATTGTATGTTTGGAAATTCTTCTATGATTGATTCTAAAGCAAAAATCAATTTTTGAGA CAAGCTTTTGTGAGCAGCGTCTGGTTGCTAGAGTTGATTATGAGAAAAAAAAAAGTTGATTCAAACATGCTATAATTGGT AATGGTTTTAACCTGAGCTAATGCTTAATGGGTTTTAATGTTTGTTCCTTACAGAACCATTTATTGGAGTGAATATTGGA ACAGATCTCTCAGACATGCCTCACCCCACTCAAGTAGTAGCACTGCTTAAATCCCAAAAACTTCAACATGTCAGATTGTA TAATGCTGACCAAGCTATGCTCGTTGCACTTGCAAACACTGGAATTCAAGTTGTTGTGTCTGTCCCCAATCAAGAGCTCC TATCAATTGGTCAATCAAATTCCACAGCAGCAAAATGGGTTTCTACCAATGTGGTAGCACATTATCCAGCTACTAATATC ACAGCAATTTGTGTTGGTTCTGAGGTTTTAACCACCCTCCCTAATGCAGCAAAACTACTAGTCAACGCTCTTAAGTACAT TCATTCAGCCCTTGTTGCGTCGAATCTCGATCGCCAGATTAAAGTTTCAACACCCCTTTCCTCTACCCTCATCCTTGATT CATTTCCACCTTCCCAAGCCTTCTTTAACCGCTCGCTGAATCCAGTCTTGGTCCCAATGCTCGATTTCTTGCAATCCACC GGCTCTTATCTCATGCTTAACATCTACCCTTATGACGACTACATGCTGTCGAATGGTGTGATTTCATTGGACTATGCACT CTTCAAGCCTCTTCCTCCCAACAAGGAAGCTATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTCTGG TTGATGCAGCATACTTTGCCATGTCTTATCTCAACTACACTAACATTCCTGTGGTGGTGACTGAGACAGGTTGGCCCTCA AAGGGTGACTCTAATGAGCCGGATGCAACGCTCGACAATGCCAATGCTTACAACAGCAACTTGATCAAGCATGTGCTGAA TGTAACCGGAACTCCAAAGCGCCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGATACAAAGGACG GGCCATTGTCAGAGAAAAACTGGGGATTGTTTGATGCTGATGGGAAACCTATTTACATTTTACACTTGACAGGATCAGGA GCAGTGTTGGCGAATGACACTACCAACCAAACTTACTGCGTTGCGAAGGACGGTGCTGATCCGAAGATGCTGCAGGCTGG GATAGACTGGGCATGTGGACCTGGCAAGGTGGATTGCTCTCCATTGTTGCAAGGAGAGGCATGCTATGAACCAGACAATG TGAATGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTGAGTCATGTAATTTCAATCAA ATGGCTACAATCACCACCTCAAATCCAAGTAATTTACCATTTTCCTTTGAGATTGTAAATATTTGGCTGCATTGTTGTGA TTTTTGTGGTTCTATTGGCGATTTCTAGTATGACTTATGATATTCTAAATGATTGTTGCAGGTCATGGTTCCTGTATATT TCCAGGAAGGTAATGTATTTGTCCTGAGATATTTGTGACATACTACTAAGATAATGGTGTGATATTGGTGCAGCTATGAT CTTATTGAGATATTATATATCAGATATGCTGTAATCTCATAATACCAGGATCAACCGATCAACATCTTAGTAATATGT
CDS sequence (LotjaGi6g1v0056200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCACCCCACTCAAGTAGTAGCACTGCTTAAATCCCAAAAACTTCAACATGTCAGATTGTATAATGCTGACCAAGC TATGCTCGTTGCACTTGCAAACACTGGAATTCAAGTTGTTGTGTCTGTCCCCAATCAAGAGCTCCTATCAATTGGTCAAT CAAATTCCACAGCAGCAAAATGGGTTTCTACCAATGTGGTAGCACATTATCCAGCTACTAATATCACAGCAATTTGTGTT GGTTCTGAGGTTTTAACCACCCTCCCTAATGCAGCAAAACTACTAGTCAACGCTCTTAAGTACATTCATTCAGCCCTTGT TGCGTCGAATCTCGATCGCCAGATTAAAGTTTCAACACCCCTTTCCTCTACCCTCATCCTTGATTCATTTCCACCTTCCC AAGCCTTCTTTAACCGCTCGCTGAATCCAGTCTTGGTCCCAATGCTCGATTTCTTGCAATCCACCGGCTCTTATCTCATG CTTAACATCTACCCTTATGACGACTACATGCTGTCGAATGGTGTGATTTCATTGGACTATGCACTCTTCAAGCCTCTTCC TCCCAACAAGGAAGCTATTGATTCTAACACCCTTCTCCACTACTCCAATGTGTTTGATGCTCTGGTTGATGCAGCATACT TTGCCATGTCTTATCTCAACTACACTAACATTCCTGTGGTGGTGACTGAGACAGGTTGGCCCTCAAAGGGTGACTCTAAT GAGCCGGATGCAACGCTCGACAATGCCAATGCTTACAACAGCAACTTGATCAAGCATGTGCTGAATGTAACCGGAACTCC AAAGCGCCCTGGAATTGCTGTTAGTACTTACATCTATGAGCTCTACAATGAGGATACAAAGGACGGGCCATTGTCAGAGA AAAACTGGGGATTGTTTGATGCTGATGGGAAACCTATTTACATTTTACACTTGACAGGATCAGGAGCAGTGTTGGCGAAT GACACTACCAACCAAACTTACTGCGTTGCGAAGGACGGTGCTGATCCGAAGATGCTGCAGGCTGGGATAGACTGGGCATG TGGACCTGGCAAGGTGGATTGCTCTCCATTGTTGCAAGGAGAGGCATGCTATGAACCAGACAATGTGAATGCACATGCAA ATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTGAGTCATGTAATTTCAATCAAATGGCTACAATCACC ACCTCAAATCCAAGTCATGGTTCCTGTATATTTCCAGGAAGATATGCTGTAATCTCATAA
Protein sequence (LotjaGi6g1v0056200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPHPTQVVALLKSQKLQHVRLYNADQAMLVALANTGIQVVVSVPNQELLSIGQSNSTAAKWVSTNVVAHYPATNITAICV GSEVLTTLPNAAKLLVNALKYIHSALVASNLDRQIKVSTPLSSTLILDSFPPSQAFFNRSLNPVLVPMLDFLQSTGSYLM LNIYPYDDYMLSNGVISLDYALFKPLPPNKEAIDSNTLLHYSNVFDALVDAAYFAMSYLNYTNIPVVVTETGWPSKGDSN EPDATLDNANAYNSNLIKHVLNVTGTPKRPGIAVSTYIYELYNEDTKDGPLSEKNWGLFDADGKPIYILHLTGSGAVLAN DTTNQTYCVAKDGADPKMLQAGIDWACGPGKVDCSPLLQGEACYEPDNVNAHANYAFDTYYHQMGKSPESCNFNQMATIT TSNPSHGSCIFPGRYAVIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 409 | 409 | 9.2E-249 | – | |
| Gene3D | 1 | 311 | 311 | 4.9E-113 | – | |
| PANTHER | 1 | 409 | 409 | 9.2E-249 | – | |
| Pfam | 2 | 309 | 308 | 1.1E-78 | ||
| SUPERFAMILY | 2 | 309 | 308 | 1.38E-83 | ||
| ProSitePatterns | 224 | 237 | 14 | - | ||
| SMART | 326 | 411 | 86 | 6.4E-46 | ||
| Pfam | 327 | 398 | 72 | 9.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi6g1v0056200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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