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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0056400 |
Transcript ID | LotjaGi6g1v0056400.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | RNA-binding family protein; TAIR: AT5G37720.2 ALWAYS EARLY 4; Swiss-Prot: sp|Q6NQ72|THO4D_ARATH THO complex subunit 4D; TrEMBL-Plants: tr|V7D142|V7D142_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0056400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10240820..10245511) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGACGCGGTTTGAAGATACGCAAAATATATAAACAGTGCCTTTCTCAGTTGCGAAGCTAAATCCAACTCTCTCTCTC TCTTTCTCTTTCGCAGAAACCCTAAAACCCCCCCTTTTCTCTGAAGCTTCATCAAGCTTTTGCCCCCAAAAACACGCTCT CTCTCCCAATCTTCTCCTTCCGATTCTTCTTTGCACACTTCATTCCCTTCTCCTTTCGTAGATTTGTTATCATCTCAAGG TAATTTTCTTCTTTTCCTCTATTTGTTCCCCTCTAATTGCGATTCCGATGCGTTTCGACTAGATTAGGGTTCTTCAGTTT CTAGTTTGTGATTTGTGTATAGTGTTGTTGAACTCTGTAATTCGCCAAATTGAGATATGATTTTATTTGTTTTTCAATGC CTTTTTCATGCTTTTGTGTTGGGTGGGTGTGTGGGGGATCAGAAGCTCTGATCCATTACTGCTATAGTGCTGTCTGTTAA GGAGATCATTCTGTTGTTTCTATTTTCTTACAAAATTGGAAGCTGGAAATTAAGTGGGTTTTTTTTTTTTAATTTGGGTA GTGTTAAGACTGAAGAGAGATCATATAGTCGAAGGCATTCGTTAGAATTCTCTGTTAATTGTGTTGGGTGTCTAAAAATT CAGAAGGGAATGTTAAAGGTGGGATCTGCTAGTTGGTATTTTGGCATTTTCTGGTGGGCTGGTCTCCAAATTGTAGATTC TTTTGGGGTGTTACAGTTTCATAATATATATTTGGCCAATAATTTCTGGAGCTTACTTTAGTTTGTATCAACAATATTGT CATCATAGTAGGCGTGTCATTCTTTGTTGTTTACGTTAGGACATGTACATGTAACTGATTTCATTCATTGTTTTTGCAGG TTAACAATATCTAAATTTCTTGAAGGGTCAGACTTTGTTAAAGTGCAAGTGCTATGGCTTCTTCATTGGATATGTCACTT GATGACAGAATCAAGAACAGGAGTAGCAGAGGGAGAGGTAGAGGACGTGGTGGAGCCCGTTCTGGCCGTGGACCTAGCAG GACTCTTAATGGTGGAAGAATGACTGGTGCCTTTGGTGGTAGAAGAATGACTGGTGCTGTTAATGGTGGAAGAACAACTG GTGCTGTTCGTAGAGGTCCTCTTATGGTTACCACGCGGCCATCATCCTATGCTATTGCCAAGGCAAGCTCAAAAAACGTG GATGCTTATACATGTGCTTGAGATTCTGATATTCTATAATATACCCAATAATGAGACAAATCAGCATTATAGAAACTCAA AAGCAAGAGGAACTCCTTTAGTATTTGTTCCTTGGAGAAGCTCATGCTTGATCGTTTTGCAATTAGTATACACCTAAGAG TTGTTTGCTTTTGTTTTTGGGGGCTTTGCTACAGATCTCTGATGTGTGCAGGAGTTCTTTGATGATTCCTGGCATATTTT GTGAAGGAGCTTCATTAGGTGAATTTCAAAATGGAGCTCTTTCCAGTAGCACAAAAATCATATAACTATATAAGGGGGGT TAAATTCTCTAAACCACGATAATCCGTTTCATTTACATAAATGTTTGGCTGGTTTGTCTGGGATGGCGTTTTATTGGGAT CCTCTTACTAAGTTGGGTTCAATGGTGCAAGAATTCAGTTTACTTCCCCATTTCATGGTATTTTGCAAAGGAGGTTTTCA CATAACATCAGAACTGGAGCTCTCACTTGTGGCATTGCACTGGTTCATATGCAGTGGCTGAATTCTTACTCCCGTTTACA ACCTTTTACCTAGAGCTTTGATGGTTGAGTATGGATTATCCTTTGAATTTATTGCCGTGGCCAGATCTACTTCCTTAATA ACATTTTTGTTCTGTTTTCTCGGGGATTTTCCTACACTGACTAATCTTGAAGAATGATTAATAATGTTTTCTGGTCATAA TCTGACGTCTTCTTTTGCCTCTGGAAACTGTTTGGTTTGGACAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAAT GATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGA CCATGGAGTAACCAATGAAGACATAAGGGTATATGCTGTCATATTAATATATGCTTCGTTCTTAGTCACTTTTTCCACCC AACCGCTCTAGAAGTTCTCCTGAAACTTGATTTGCAACTCAGGAACTTTTCTCTGAGCTTGGAGACCTGAAGCGCTATGC TGTTCATTATGACAAAAATGGACATCCAAGTGTATGTATTGGAATTTGTATTCTAAACTCAATTGCTATTTTATTTTCTG CATCTTGTTCTTGATTATTAATTCACTTATACCTCAGTTTGGGGTCTTTTATGAGAGCAGCATTTGTTATTTTTGGGGGG GCGGTGAGGGCAAAGTTTTCAAAAACGTGAAATGTTTCAGAACGTTGTGATCTCCTTAGCCATGGCATTTTTTCCATACT CAATAGTTTTGTCTAATGCATATCATCTTTTCAATTGTGATTATCATTTTCTTAAGCTAAATATTTAATACATTTCAATG TGTAACAGGGTTCAGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCTGCTCTCAAACGATATAATAATGTACTT TTGGATGGGAAGCCCATGAAGATTGAAATTGTAGGTGCTGATTCAGAATTGCCCATATCTGCTCGTGTGAATGTCACTGG GGTGAATGGACAGAGAAAGAGGACAGTTGTGATGACGTAAGTTATCATGAAGGCTTTTGTGTGATAAAAATGTGTTCGTC TGTGTATCTGTTGTGAAATAAGTTCATGTTTATTTTTTAATTCCAAAAATGATGTTTACACGACCAATATATGCAGCAGC TGGCATATATCTTTACTCTATAATGTTCGAAGTTCTTTTGTAATCATTCATCTACTTTTGGTAAAAAAAAAAGTAAGTAC TTCAGATTGTGTGTGCTGATGTTTAAAGGATTTGCAGGCCTGGAGGTGGTCGAGGTGGAGGTCCAGCTTTGGCTAACCGT GGTGCTGGGTAAGTCTTACATTTGTTATCTTTTATTGATTAAACTTGCTGAAATATATTCATTGAGCTTTCTACAATTAA GTTAATAATATGCATATACATACATATATTTTTTTTTGTCAGTCTATCATATTAATAAGATTTAGGTCATTGTCTTCCTT ATGTTTATAGTTCTCTATTTACTGTAAGGTCAAGTGGTTTTTAATTTTTTGTCTTCATGTTTAGATGGGATTTCATTAGA GTACTTGCAATTGTGACTTGCAAAGGATTTGGCATTTGCCAAGCCCTCTTTAGTTGCTGTTTCATCCTACTTTTACCTAG TTTTTTAGCCGTGTTTTATTATGATGATTTTATATCATCCCTCTTTAAGGTTTTTTTTAATAATTGTAACCAAATGAAAT TGACTTCTACTTAATCTCTAAAATAGTTAATTTTTTTACAGAGCTAAAACCAGTTTTAAAAGCTTTCACAAACGAGCCCC ATATTTATAGATCATTTATTTAGAATCTCTGTAATGTGCATGTCACATGTCTTTGCAAGAATAGTCAAATTTGTCTACAG TATTGACCATGTTTAGAATTTTCAGATTCTGGTAGACAGATATTGAAATATTTGCATACATAAATCCTTTAAAGCACTTT AGAATGTAGAAACTTATGAGTGGTACTCTTGGATATTGGTTTCTTCACTGATTGTGTCTTGCCACTCTTACCATCATCAA AGCAAGGATTAGTTTTTCTTTCTTTCTGAAATTGGTGAATTACCCTGCACATAATGAACAGGCAAGATGTTTATGGTGTT TTATTTTGATTGGCCGTGCTTGAGTTTTTGTAGTTCTGGTCCAATTTCTTTAGGAGTCCTAGTGGGACTTGGGTAATGTG CTTCTTTGTATGATTTTTTTCTGTTAACTTGCCTTGCTTGCTAATGAAGGTATTTGTGGGGTTGCATGAATCTTCTTAAT TGTCCCCGAAGCATTTTCAGTAGACCTGTGCTGTGTTGAAATATTCAAATGATCTTATAGTTTCTTTGTTTTCATTCACT TCAGTTAAGTTGTTTACCAAAGACTTCTCTTCATTTGTTTATTTATATACAGTTGGGGACGCCGTGGTGGCTCAAGGAGT GCTATTGGTAGTGGGAGTGTACGTGGACGTGGTGGAGGACGTGGGGGCGGCCGAGGCCGTCGTGGCAGGGGTGGAGGCCG GGGTCGTGGAAGAAAGGGTTGGGTTGAGAAGTCGGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATGCTGAGTCCA TGCAAATCTCTTGATCTTAGAAGTAGTCTTATTTGCTTTGTACAGAGGAGCTTTAAGTTTTTCCATGGCGTTACTTGTTT TTTATTATACTGGGCTGTTAAATGTGCCATTCTTGTGAGGGTCTGAATGATTGCTTTGGTGATTTTAAGTTCAGATTATA TAGATTATTGTTGCATTTTTGCCTATTGTTATTGGTCAAATTTGCAATTGTCGGGCTCCATTAGCTGGTCTCCCAGTCTT CTGTCTTGAAGATTTTCTCATCTTACAAGAAATTAGTTTTTTGGTTCAGTTGAACTCTAGTTTTTAACATGCTTCTTCAG TGTTCTGTTAAGCAGTTATATGTCAATCTTTTTAAAACAGTTTAGTATTTTC
CDS sequence (LotjaGi6g1v0056400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCATTGGATATGTCACTTGATGACAGAATCAAGAACAGGAGTAGCAGAGGGAGAGGTAGAGGACGTGGTGG AGCCCGTTCTGGCCGTGGACCTAGCAGGACTCTTAATGGTGGAAGAATGACTGGTGCCTTTGGTGGTAGAAGAATGACTG GTGCTGTTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTACCACGCGGCCATCATCCTATGCT ATTGCCAAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGAT TCAAGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTT TCTCTGAGCTTGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTC TATACTAGAAGGAGTGATGCATTTGCTGCTCTCAAACGATATAATAATGTACTTTTGGATGGGAAGCCCATGAAGATTGA AATTGTAGGTGCTGATTCAGAATTGCCCATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGACAGAGAAAGAGGACAG TTGTGATGACGCCTGGAGGTGGTCGAGGTGGAGGTCCAGCTTTGGCTAACCGTGGTGCTGGTTGGGGACGCCGTGGTGGC TCAAGGAGTGCTATTGGTAGTGGGAGTGTACGTGGACGTGGTGGAGGACGTGGGGGCGGCCGAGGCCGTCGTGGCAGGGG TGGAGGCCGGGGTCGTGGAAGAAAGGGTTGGGTTGAGAAGTCGGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATG CTGAGTCCATGCAAATCTCTTGA
Protein sequence (LotjaGi6g1v0056400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSLDMSLDDRIKNRSSRGRGRGRGGARSGRGPSRTLNGGRMTGAFGGRRMTGAVNGGRTTGAVRRGPLMVTTRPSSYA IAKSIRRTRPFPWQNDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVV YTRRSDAFAALKRYNNVLLDGKPMKIEIVGADSELPISARVNVTGVNGQRKRTVVMTPGGGRGGGPALANRGAGWGRRGG SRSAIGSGSVRGRGGGRGGGRGRRGRGGGRGRGRKGWVEKSAEELDKELETYHAESMQIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 64 | 64 | - | – | |
PANTHER | 1 | 298 | 298 | 8.7E-110 | – | |
PANTHER | 1 | 298 | 298 | 8.7E-110 | – | |
SUPERFAMILY | 19 | 188 | 170 | 5.05E-22 | ||
Gene3D | 108 | 190 | 83 | 9.1E-20 | ||
ProSiteProfiles | 114 | 191 | 78 | 14.743 | ||
CDD | 114 | 188 | 75 | 1.95437E-42 | – | |
SMART | 115 | 187 | 73 | 1.8E-16 | ||
Pfam | 116 | 184 | 69 | 2.1E-13 | ||
MobiDBLite | 216 | 281 | 66 | - | – | |
SMART | 225 | 300 | 76 | 8.3E-14 | ||
MobiDBLite | 257 | 271 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0056400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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