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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0056400 |
| Transcript ID | LotjaGi6g1v0056400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G37720.2 ALWAYS EARLY 4; Swiss-Prot: sp|Q6NQ72|THO4D_ARATH THO complex subunit 4D; TrEMBL-Plants: tr|V7D142|V7D142_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0056400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10241178..10244578) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTCTTCATTGGATATGTCACTTGATGACAGAATCAAGAACAGGAGTAGCAGAGGGAGAGGTAGAGGACGTGGTGG AGCCCGTTCTGGCCGTGGACCTAGCAGGACTCTTAATGGTGGAAGAATGACTGGTGCCTTTGGTGGTAGAAGAATGACTG GTGCTGTTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTACCACGCGGCCATCATCCTATGCT ATTGCCAAGGCAAGCTCAAAAAACGTGGATGCTTATACATGTGCTTGAGATTCTGATATTCTATAATATACCCAATAATG AGACAAATCAGCATTATAGAAACTCAAAAGCAAGAGGAACTCCTTTAGTATTTGTTCCTTGGAGAAGCTCATGCTTGATC GTTTTGCAATTAGTATACACCTAAGAGTTGTTTGCTTTTGTTTTTGGGGGCTTTGCTACAGATCTCTGATGTGTGCAGGA GTTCTTTGATGATTCCTGGCATATTTTGTGAAGGAGCTTCATTAGGTGAATTTCAAAATGGAGCTCTTTCCAGTAGCACA AAAATCATATAACTATATAAGGGGGGTTAAATTCTCTAAACCACGATAATCCGTTTCATTTACATAAATGTTTGGCTGGT TTGTCTGGGATGGCGTTTTATTGGGATCCTCTTACTAAGTTGGGTTCAATGGTGCAAGAATTCAGTTTACTTCCCCATTT CATGGTATTTTGCAAAGGAGGTTTTCACATAACATCAGAACTGGAGCTCTCACTTGTGGCATTGCACTGGTTCATATGCA GTGGCTGAATTCTTACTCCCGTTTACAACCTTTTACCTAGAGCTTTGATGGTTGAGTATGGATTATCCTTTGAATTTATT GCCGTGGCCAGATCTACTTCCTTAATAACATTTTTGTTCTGTTTTCTCGGGGATTTTCCTACACTGACTAATCTTGAAGA ATGATTAATAATGTTTTCTGGTCATAATCTGACGTCTTCTTTTGCCTCTGGAAACTGTTTGGTTTGGACAGTCTATTCGC AGAACCAGGCCTTTTCCATGGCAGAATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGATTCAAGGAATAGAAGTTGG CACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGTATATGCTGTCATATTAATATATG CTTCGTTCTTAGTCACTTTTTCCACCCAACCGCTCTAGAAGTTCTCCTGAAACTTGATTTGCAACTCAGGAACTTTTCTC TGAGCTTGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGTATGTATTGGAATTTGTATTC TAAACTCAATTGCTATTTTATTTTCTGCATCTTGTTCTTGATTATTAATTCACTTATACCTCAGTTTGGGGTCTTTTATG AGAGCAGCATTTGTTATTTTTGGGGGGGCGGTGAGGGCAAAGTTTTCAAAAACGTGAAATGTTTCAGAACGTTGTGATCT CCTTAGCCATGGCATTTTTTCCATACTCAATAGTTTTGTCTAATGCATATCATCTTTTCAATTGTGATTATCATTTTCTT AAGCTAAATATTTAATACATTTCAATGTGTAACAGGGTTCAGCTGAAGTTGTCTATACTAGAAGGAGTGATGCATTTGCT GCTCTCAAACGATATAATAATGTACTTTTGGATGGGAAGCCCATGAAGATTGAAATTGTAGGTGCTGATTCAGAATTGCC CATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGACAGAGAAAGAGGACAGTTGTGATGACGTAAGTTATCATGAAGG CTTTTGTGTGATAAAAATGTGTTCGTCTGTGTATCTGTTGTGAAATAAGTTCATGTTTATTTTTTAATTCCAAAAATGAT GTTTACACGACCAATATATGCAGCAGCTGGCATATATCTTTACTCTATAATGTTCGAAGTTCTTTTGTAATCATTCATCT ACTTTTGGTAAAAAAAAAAGTAAGTACTTCAGATTGTGTGTGCTGATGTTTAAAGGATTTGCAGGCCTGGAGGTGGTCGA GGTGGAGGTCCAGCTTTGGCTAACCGTGGTGCTGGGTAAGTCTTACATTTGTTATCTTTTATTGATTAAACTTGCTGAAA TATATTCATTGAGCTTTCTACAATTAAGTTAATAATATGCATATACATACATATATTTTTTTTTGTCAGTCTATCATATT AATAAGATTTAGGTCATTGTCTTCCTTATGTTTATAGTTCTCTATTTACTGTAAGGTCAAGTGGTTTTTAATTTTTTGTC TTCATGTTTAGATGGGATTTCATTAGAGTACTTGCAATTGTGACTTGCAAAGGATTTGGCATTTGCCAAGCCCTCTTTAG TTGCTGTTTCATCCTACTTTTACCTAGTTTTTTAGCCGTGTTTTATTATGATGATTTTATATCATCCCTCTTTAAGGTTT TTTTTAATAATTGTAACCAAATGAAATTGACTTCTACTTAATCTCTAAAATAGTTAATTTTTTTACAGAGCTAAAACCAG TTTTAAAAGCTTTCACAAACGAGCCCCATATTTATAGATCATTTATTTAGAATCTCTGTAATGTGCATGTCACATGTCTT TGCAAGAATAGTCAAATTTGTCTACAGTATTGACCATGTTTAGAATTTTCAGATTCTGGTAGACAGATATTGAAATATTT GCATACATAAATCCTTTAAAGCACTTTAGAATGTAGAAACTTATGAGTGGTACTCTTGGATATTGGTTTCTTCACTGATT GTGTCTTGCCACTCTTACCATCATCAAAGCAAGGATTAGTTTTTCTTTCTTTCTGAAATTGGTGAATTACCCTGCACATA ATGAACAGGCAAGATGTTTATGGTGTTTTATTTTGATTGGCCGTGCTTGAGTTTTTGTAGTTCTGGTCCAATTTCTTTAG GAGTCCTAGTGGGACTTGGGTAATGTGCTTCTTTGTATGATTTTTTTCTGTTAACTTGCCTTGCTTGCTAATGAAGGTAT TTGTGGGGTTGCATGAATCTTCTTAATTGTCCCCGAAGCATTTTCAGTAGACCTGTGCTGTGTTGAAATATTCAAATGAT CTTATAGTTTCTTTGTTTTCATTCACTTCAGTTAAGTTGTTTACCAAAGACTTCTCTTCATTTGTTTATTTATATACAGT TGGGGACGCCGTGGTGGCTCAAGGAGTGCTATTGGTAGTGGGAGTGTACGTGGACGTGGTGGAGGACGTGGGGGCGGCCG AGGCCGTCGTGGCAGGGGTGGAGGCCGGGGTCGTGGAAGAAAGGGTTGGGTTGAGAAGTCGGCTGAGGAACTTGACAAGG AACTGGAGACCTATCATGCTGAGTCCATGCAAATCTCTTGA
CDS sequence (LotjaGi6g1v0056400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCATTGGATATGTCACTTGATGACAGAATCAAGAACAGGAGTAGCAGAGGGAGAGGTAGAGGACGTGGTGG AGCCCGTTCTGGCCGTGGACCTAGCAGGACTCTTAATGGTGGAAGAATGACTGGTGCCTTTGGTGGTAGAAGAATGACTG GTGCTGTTAATGGTGGAAGAACAACTGGTGCTGTTCGTAGAGGTCCTCTTATGGTTACCACGCGGCCATCATCCTATGCT ATTGCCAAGTCTATTCGCAGAACCAGGCCTTTTCCATGGCAGAATGATTTGTTTGAAGATAGCTTAAGAGCTGCAGGGAT TCAAGGAATAGAAGTTGGCACCAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGACATAAGGGAACTTT TCTCTGAGCTTGGAGACCTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACATCCAAGTGGTTCAGCTGAAGTTGTC TATACTAGAAGGAGTGATGCATTTGCTGCTCTCAAACGATATAATAATGTACTTTTGGATGGGAAGCCCATGAAGATTGA AATTGTAGGTGCTGATTCAGAATTGCCCATATCTGCTCGTGTGAATGTCACTGGGGTGAATGGACAGAGAAAGAGGACAG TTGTGATGACGCCTGGAGGTGGTCGAGGTGGAGGTCCAGCTTTGGCTAACCGTGGTGCTGGTTGGGGACGCCGTGGTGGC TCAAGGAGTGCTATTGGTAGTGGGAGTGTACGTGGACGTGGTGGAGGACGTGGGGGCGGCCGAGGCCGTCGTGGCAGGGG TGGAGGCCGGGGTCGTGGAAGAAAGGGTTGGGTTGAGAAGTCGGCTGAGGAACTTGACAAGGAACTGGAGACCTATCATG CTGAGTCCATGCAAATCTCTTGA
Protein sequence (LotjaGi6g1v0056400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSLDMSLDDRIKNRSSRGRGRGRGGARSGRGPSRTLNGGRMTGAFGGRRMTGAVNGGRTTGAVRRGPLMVTTRPSSYA IAKSIRRTRPFPWQNDLFEDSLRAAGIQGIEVGTKLYVSNLDHGVTNEDIRELFSELGDLKRYAVHYDKNGHPSGSAEVV YTRRSDAFAALKRYNNVLLDGKPMKIEIVGADSELPISARVNVTGVNGQRKRTVVMTPGGGRGGGPALANRGAGWGRRGG SRSAIGSGSVRGRGGGRGGGRGRRGRGGGRGRGRKGWVEKSAEELDKELETYHAESMQIS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 1 | 298 | 298 | 8.7E-110 | – | |
| PANTHER | 1 | 298 | 298 | 8.7E-110 | – | |
| SUPERFAMILY | 19 | 188 | 170 | 5.05E-22 | ||
| Gene3D | 108 | 190 | 83 | 9.1E-20 | ||
| ProSiteProfiles | 114 | 191 | 78 | 14.743 | ||
| CDD | 114 | 188 | 75 | 1.95437E-42 | – | |
| SMART | 115 | 187 | 73 | 1.8E-16 | ||
| Pfam | 116 | 184 | 69 | 2.1E-13 | ||
| MobiDBLite | 216 | 281 | 66 | - | – | |
| SMART | 225 | 300 | 76 | 8.3E-14 | ||
| MobiDBLite | 257 | 271 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0056400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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