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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0057200 |
| Transcript ID | LotjaGi6g1v0057200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A061DXY4|A0A061DXY4_THECC F-box/LRR-repeat protein 23, putative isoform 1; Found in the gene: LotjaGi6g1v0057200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10467928..10472339) extracted from Lotus japonicus Gifu genome v1.2.
GTACATTATGACCTATACTATTATTTTTTTAGTCTTTATAAAGCAGAACACTCATCTCACTAGCTAGAAAACACAGCATT CATTACCTCTAGCATTTTCTGACAAGGCAAACAGTGTTAAAAAGGAGTGATGTGAGTCTTAGTTAGTTTTATCCTCAACG AGACATTTCAACTTCAACAATAATCAGCATTTCCTATTGTTTATAAGAGCCTGTTGAGCAGAGAAGTTAACAATCAACTT CATTTGTAAGATGGCATTTTCTGAAGAAAGGCCTGTGAAGGAAGCCAAAGGAGAGAGCGCAGAGGAGGAACCAAACTGGC TTGAATTAATTCCTGTTGAACTCGCTGCTAGGATTCTAAACAAGCTTGGTATCTTTGAAATTTTCACCAATGCAAGCCTA GTGTGTCCCTTCTGGTTGAAAGTTTGCAAGAATCCCCTCACTTGGCGCACCATTGACTTGACCAATCACTCTCACCATGC AGGGTCCAAATTGCTCAAGTTTTGTCTCCATGCCATTGAACGAAGCTGTGGTTCTTTGGAAGACATTAGTATTGAGGATT TTTGCACTGATGAAATCCTCCAATCCATTGCTGATAGGTAATCTCATTATTTTTCTCTTCATTGGCTTAATGCAATGTTC TATGAATAGTGATTTTCCATGTTTTTTTCTTAATGTATGTTTATATTTATTTAATTTTTTATAAAAAGCATGTAATATTT GAATGAGGGGACTCAACATTTGAGGACATGATTATTGGAAGGGTTAGAAATAATACTATTAAATTATTTATGTGATTTTA ATGAAACAGCTTAGAATTTTGAGATAATTAACTGTTCTTTCATACTTGTGTTTAAACATGTTTCTTTGTATTTGTTTTCC TTTTATCTTTCTATGTTTTATAGCGGAAGTCACCTACGACGAATGCGGCTTTTGAACTGCTGGGAGATTTCTGATGAACA ATTGAGTGAGACTGTGAAGAAGCTTCCACTGTTGGAGGAGTTTGAAATTTCATTCAGCCCCCTATCTAAGGACACTTTGG AACTCATGGGCAAATGTTGCCCACATTTGAAAGTGCTGAAATTTAACATGAGGGGACTGAAAGGCTTTGAATGTGATGAT GAGGCATTTGCTATTGCAAAAACCATGCCTCAGCTGTGTCATCTTCAGCTTTTGGGAAACAGGCTCACTAATAATGGCTT GATTGCTATTCTTGATGGGTGCCCTCATCTTGAATCTCTTGACCTGCGTGCTTGTTCTAATGTTGTTCTGAGTGGAAGAT TGAAGGAAAGGTGTCTTAAGCAGATCAAAGATTTACGTCTTCCAGAGGATGTGAGTGAAGTTCCCAAGTATGTTGATGTT GAAGGTTGTGGCTGTGGATGTGAGGATGATCACAAGGGTAATTTAGCAGCACTTGTAGCACTAGATTTTAATGATCTTCC GCAAGACATCCTTGATCTATTATGATTCATGTTTTAGTTTAGTAATCCTATGTTCCTTTTAGCAGTATATGAAGCACTTG ATCTTGATCTTGATCTTGATCTTGTGGCTGACTACTTTGGTCTATTATGATTCATGTTTTAGTTTAGTGATCCTATGTTC TTTTTGGTTATTTTGATCACCTGCAGCCACGTACTGTTCTATATGGCATTTGTTTTTGGTTTTCAAAGAGACTCAATGTT GTTTTAAATGCCATGGTCCTTTTACTTTTGTAGCGTGTCCTAGATAACTCAGGTTTTGAGTTTACTTGTCTTGATAGATC CTTATGAACTCTTGTATTCTAATTCTAATATGATGGATGCTGCTGGTTACTAGTTTAAGTCCAATTTTGCCATTAGTCTA TATCTCCACATATTGTTTATTAAGATCAAACTATTATATTTTCACAAATTTGTTCCTCAAGTTTGAAGATTTTACAACAT TGAGAGCATGATGATTTCAGGAGGATTTTAGAAAAATAAAGCCTTACATGATCATGGCTTTCTCTAGTGCTGACCTAAAT GGTTGTTGTTTGGCTTCTGAACTTGGCCAGTATTGGTGAATCAGTTGTGACAAAATGATTTATGAGCTTTGACCTATATT GGATGGTTTAGTAATGAGATATTAGTGTTAATGTCTGCAGTTTCTTTTCCTTCTTCCCTTAAATTTCAATGGAAAAAAAA TAAGCAAAAACAAGAAAATGAAAAAAGATAGGTCACGTGAGTGACCAACAGACAAATGAAATGAAACAAAGAAATAGAAA AAGTAAACATAGCACACAGAAGAATTAATGTGAGTGAGACAAGATTAAGCTCTATAAGGCAATGAGTGTAATAGACACGA AGGCAAAGGTGTTTAAAGGCAATCAAAAATAGGACAATCCTCCTCCTATCTCTGCTCCTGAGGCAGAAAAGAAAAGCTAA TTTCATGAATCAATTGGTAAGTAACAGAGGTGCAGAAAAGAGACCAAGAAAGATGAGCATGAAAAAAGAAAGGGGATAGG GACTCTACAATGCTCTGTTTATGTTGTTGATAAGGAAAATTTTGAGCATCAGTGTATCAGTGTGCAGAAGCAAAAGACAA AAAATAAGGAACTCATAACACATTAACACCAACACACACTCCTCACTCTCTTACCCTCTCTCTATAAAGTAAGATGCATA ATAAAGAAAAAGGGAACAGAGAAGACCAACTAGTAACTAGTTGAGTGCTTAATTCTTTATAGAAACCTCTTGTTGAACGA ATTCAACAACCAACTTCATTTGCAGGATGGCATTTTCTGAAGTAAGGCCAGCGAAGGAGGAGCCAAACTGGCTTGAACTT CCTAGAGAAGTCACTGCAAAGATTCTGCACAAGGTTGGTCCCTTTGAAATTTTCACAACTGCAAGCCTAGTGTGTCATTT ATGGTGGAAAATCTGCATGGACCCTCTCATGTGGCGCCCCATTGACTTGACCACCCACCCTCGCTATGCACAATCCAAAT TGGAGAAGTTTTGTATCCATGCCATTGAACGAAGTTGCAGTCAATTAGAAGACATTAGTATTGAGGACATCGCCACTGAT GAAGTCCTCAAACACATTGCTGATAGGTAATCTCATCATTTTTTCTCTTTATGGATGGATGTTCCAAAATTCATAATTCG CTATTTTAGGGGACCAAAAACATATTTAGCCCTAGTTGCATGTAATGCTTTCTATTTACAGTTAAGGAGTTAGAGATTCA GTTACATTGTGTGAGTTTGGAATTAGTTTACATTTAGTCATTTTTAAAATTTGGGGGATATGTTTTTTGGAAGTTTCATA ATTTTGCTTGTTTATGCCTGTTTTGCTTTTTTCTTGTGATGTTTTACAGCGGAAGTCACCTACGACGGATGCGGCTTATG AAATGCTGGACAGTTTCAGATAAACAATTGAGTGAGGTTGTGAAGAAGCTTCCACTGTTGGAGGAATTTGAGATTTCATT CGGTGACCTATCTAAAGATACTTTGGAACTCATGGGCAAATGTTGCCCCCATTTGCAAGTGCTGAAATTTAACATGCAGG AAATTAAAGGCTATGAGTGTGATGATGAGGCGTTTGCGATTGCGAAAACCATGCCTCGGCTACGTCATCTCCAGCTTCTG GGAAACAGGCTCACTAATGAAGGCTTGCTTGCCATTCTTGATGGATGCCCTCATCTTGAATCTCTTGACCTGCGTGTTTG CTCTAATGTCGATTTGAGCGGAAGTTTGAGGGAAAGGTGTCTTAAGCAAATAAAAGATTTACGTCTTCCAGAAGACTTGA GTGAAGTTTCCATCTACACTGAAGGTGGTAATGAAGTGGAATCTACAGATGAAGACTATCAAATTTATCTTCGGGATTAT GTTGACATTGACTGGGCCAATGAAAGGGAATCTACAGATGAAGACTATCAAATTTATCTTCGGGATTATGTTGGTCAATT ATGATTCATGTGTTAGTGCAGTGATCCTTTGTTCTTTTTGGATGTGTAGATCACCTGCAGGCAATGCCACGGTCCTTTTA TTTTTTGTGTCCTAGTAGTGTTTCACAGACTTTGTTAAGAAGACTTGAGTATTTTGTTTTTGTTGCCTGATCTCTTTGGT TTCAAATGTTTTTTATTTACTGTTTGGTGGTTCTGTTTTTTTCCTTTCTCAAGCATTGTGCTCAAGGTAGTTATTCATTC CATAAGGACTCTGGATTGCTGGTAGTTGAGGAAATCTTAAGTTCACACTATCAGCGAGTTTGCGCCAGTAGATCAAATTT AGATAACTCAAATTTTGAGTTTACCTCGATCCTTATCGAATCTATTAACTGTGAGCTTATCAATTGACTAAGATCAGTTG AATGCTTGAATTTTTTGATTGACCTAGATGGCCTAAATCTTATATGAACTCTTGTATTCTATTATTCTATATATATGTTG GATGTTGCTGCT
CDS sequence (LotjaGi6g1v0057200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTTTCTGAAGAAAGGCCTGTGAAGGAAGCCAAAGGAGAGAGCGCAGAGGAGGAACCAAACTGGCTTGAATTAAT TCCTGTTGAACTCGCTGCTAGGATTCTAAACAAGCTTGGTATCTTTGAAATTTTCACCAATGCAAGCCTAGTGTGTCCCT TCTGGTTGAAAGTTTGCAAGAATCCCCTCACTTGGCGCACCATTGACTTGACCAATCACTCTCACCATGCAGGGTCCAAA TTGCTCAAGTTTTGTCTCCATGCCATTGAACGAAGCTGTGGTTCTTTGGAAGACATTAGTATTGAGGATTTTTGCACTGA TGAAATCCTCCAATCCATTGCTGATAGCGGAAGTCACCTACGACGAATGCGGCTTTTGAACTGCTGGGAGATTTCTGATG AACAATTGAGTGAGACTGTGAAGAAGCTTCCACTGTTGGAGGAGTTTGAAATTTCATTCAGCCCCCTATCTAAGGACACT TTGGAACTCATGGGCAAATGTTGCCCACATTTGAAAGTGCTGAAATTTAACATGAGGGGACTGAAAGGCTTTGAATGTGA TGATGAGGCATTTGCTATTGCAAAAACCATGCCTCAGCTGTGTCATCTTCAGCTTTTGGGAAACAGGCTCACTAATAATG GCTTGATTGCTATTCTTGATGGGTGCCCTCATCTTGAATCTCTTGACCTGCGTGCTTGTTCTAATGTTGTTCTGAGTGGA AGATTGAAGGAAAGGTGTCTTAAGCAGATCAAAGATTTACGTCTTCCAGAGGATGTGAGTGAAGTTCCCAAGTATGTTGA TGTTGAAGGTTGTGGCTGTGGATGTGAGGATGATCACAAGGGATGGCATTTTCTGAAGTAA
Protein sequence (LotjaGi6g1v0057200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSEERPVKEAKGESAEEEPNWLELIPVELAARILNKLGIFEIFTNASLVCPFWLKVCKNPLTWRTIDLTNHSHHAGSK LLKFCLHAIERSCGSLEDISIEDFCTDEILQSIADSGSHLRRMRLLNCWEISDEQLSETVKKLPLLEEFEISFSPLSKDT LELMGKCCPHLKVLKFNMRGLKGFECDDEAFAIAKTMPQLCHLQLLGNRLTNNGLIAILDGCPHLESLDLRACSNVVLSG RLKERCLKQIKDLRLPEDVSEVPKYVDVEGCGCGCEDDHKGWHFLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 253 | 241 | 1.9E-82 | – | |
| PANTHER | 13 | 253 | 241 | 1.9E-82 | – | |
| ProSiteProfiles | 21 | 68 | 48 | 9.233 | ||
| Gene3D | 21 | 271 | 251 | 6.1E-32 | ||
| SUPERFAMILY | 50 | 237 | 188 | 3.14E-19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0057200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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