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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0057900 |
Transcript ID | LotjaGi6g1v0057900.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box/LRR protein; TAIR: AT4G05460.1 RNI-like superfamily protein; Swiss-Prot: sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23; TrEMBL-Plants: tr|A0A1J7GM44|A0A1J7GM44_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0057900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10582068..10585278) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTCTCTTCTTAACCTTGACAGCACTTAATAATCGGTAAGTTTTCTTCCATTCTTTTGTTGGAGGGTTTGTGTGCTTC TAAATTACTGTATCTGATCATGCTTTTTCGTTCATGTTCCAGGGTATTTGGTTATTTTCATTTGAATTCAATTTTGTTTT TGTATGGTCTTTACCTGCTTGATTAAATGACTATTTCCTTATATTGGATTAAACCTAAATTGGAATGGATTTTCGCCTCA AACTTGTACTGTTAGAAATTAGAATATTTGTTTGTGTAGTGGGGTTCTGCAGTTGATGTTTCTTTTAGTCCTTTCATCAC AATCTAGTGATCAATGAAATTTGAATCAAGTGTTGTGGACATGTATGTAGAACACTAGAACCTTTCTTCTGCTTGACAGA TGCTGGGTCCATTGTTGGTTCTTTTTCTAATTTTTAGTCTAGCTGTGGTTTATTGGCCAGGATGTTTATGCCTAAAACTG GTTCATGATTTAGATTTGTGTAGGTTTGTTTCCTATTTCATGGCTAAGAATATTATGATCTTCACTGTGTTGCCTTGATT ATATTAATCAATCTCTGTAATTTTGTCCTAGTATTAAAAGCTTAGATCTCCCTCCTTGACTTTCTAAGCCTTACCTTTGC ATTCCTGTTGCCTTTAGTTGGAAGTTTGTGGGTGATTATGGTGGTTTTTGTTCTTGTTACGACCTAGAGATTCTAGATCT AGGGTTTCGCACAGCTGTTTATGAATAAAAGAAAGAACTTGTCTTATTGAATGAGGTGTCTAGCCTTTTATAGTGGGGCT AAACCCCAATCCTAAGCTATTACATCATGGGCCTTACAATTACCTAAAGGGTCATGCGTCAGGTCCGACCCATACAACAA TGACTCACCCTCAATCCTTAACGCAGACTTGCCTTGTAGCCTAAAAACCCTGAAAGGGGCTAGGGCGCTAGCTTTAGGGC GTGGCACCCTAACCAGTCTACATGCCCACAATACGCTGAGTCTGAAGTATGAAGACGAAGTGCGTCTTTATTCTAGCTTA CCAAGTATGCTTTCCTCTCACCCTTGTTGCAACCTTAGACCGTGAAAGGGCTTAAGCGCCAACTTTAGGGTGTGACACCC TAGCCAGTCCAATTTTAGAAGATCTCATTTCTCTGCTTAGGAAAAGCAATAGTTTGAAGTAAGGATAATGCATATGGAGT TTGTAAAGACAAACATTCTATTCATTTTTCTTAAAATGTAAGATAAACTGAAAATATTATGAGAAAAAGGATGATGCACC GACGATGTAAAGTTTTTTTACACCGTCAACCAATCAGATTTTAAGGATGTGCCATGTCAATTAATGAAATTAAATAAAAA GAGAGATTTTCTCATATCCTTGAAATCTGATTGATTGACGGTGTAAAAAAACTTTACACCGTCAGTGCATAGAAATTAAA CTCAAAGATTATTTATTTTTTAAGCAACACTTCTATTTAATTATTTACATAGAAATCTGGCAACATTTATGAGATTTAAC TGCATTTGATTTGTAAATAAAATCAAATAGTTAAGTTATATATCCCATTAATTGAAATCAATTAACATCACATCAGCGGA ATTGATTTATATATGAAACATTAGAGCATTCATTACCTCTTGTATTTTCTGACAAGCTATTTGAGTGGCGAAAGAATTTT GAACAATTAGTAAGTATTAAAGTTTATCACAAAACGTATGACTTTTATAAGTCACAGAGACTATTCAACTTTCAAACGCC AAGATATCATTTTTATTGTTTATAAATCTATTGTTGAACATAGTTAACAATCAACTTCATTTGCGGGATGGCTGCATCTT CTTCAAGGGCAGTGAAGGAAGCAAGAGGAGAGAGCATAGAGGGGCCAAACTGGCTTGAACTTCCTAGAGAAGTGACAGCA AAGATTCTGCACAAGCTTGGTCCCTTTGACATTTTCACCAATGCAAGCCGAGTGTGTCCTTTATGGTGGAAAATCTGCAT GGACCCTCTCATGTGGCGCACAATTTACTTGACCAACCGCCCTCCCTATTCACACTCCAAATTGGCGATGTTTTGTCGCC ATGCCATCAAACGAAGTTGTGGTCATTTGGAAGACATTAGTATTGAGGGTATTGGCACTGATGAAGTCCTCAAATACATT GCTGATAGGTAATCTCATCATTTTTCTCTCTGTTGGCTGCCATGTTTTATGATTATTTCTTATTCTGTTTATGTTGCATG AACAAAACCTTTTCTATTTTATGTGTCTCCTACAGGTCTGCTATTTTCATGTTTATTTTTTATTCATTGGACATGTGCTC ATTTATGTCCTATTTTTATAAATAGCATGAAACATTTGAGTGAAAACTCAACCTTTGGCAACATGTGTTTATTGAAAACT CAACCTTTTTATCTGTTTCTTTTCAAAAATTTACAGTGGAAGTCACCTAAGACGGATTTGTCTTTTAAAATGCTGGGAAA TTTCAGACAAAGGGTTGAGAGAGGTTGTGAAGAAGCTTCCACTGCTGGAAGAGTTTGAAATTTCATTCAGCTGCCTATCT AAGGATACTTTGGAACTTATGGGAAAATGTTGCCCAAATTTGAAAGTGCTGAAATTTAACATGAAGGAATATAAAGGCTT GAAGTCTGATGCTGAGGCGTTTGCTATTGCAAAAACCATGCCTCAACTATGTCATCTCCAGCTTCTGGGAAACAGGCTCA CTAATGAGGGCTTGCTTGCCATTCTTGACGGATGCCCTCATCTTGAATCTCTTGATCTGCGTGTTTGTTCCAATGTCGAT TTGAGCGGAAGTTTGAGGGAAAGGTGCTGTAAGCAGATCAGAGATTTACGATTTCCAGAAGACTTGAGTGAAGTTTCCAC CTATGTTGAAGATGAACAACCTGATTATGATTATTATTTTGAATGTGACTGTGGATGCGACTGTGACTGGAGCAATGAAG GGGACGATAGGGCAAATGATGAATATATCATCGCTGACTATTATGGTCTATTATGATTCATTTTGTAGCTAAGCTATCCT GTGTTCTTTTAGGATATGTTAATCACCTGCAGGTACTGTTCTATATGGCATTTAATTTTGGTTTGAAGAGGCTCACTTGT TCTTCTAAATGCCATGGTTTTTTTTTTCTTTACTTTTGTGGTGTCCATGTATTCAGACTAGTACTTTATATACTTATGAA TGGTTTTAACA
CDS sequence (LotjaGi6g1v0057900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCCTCTCATGTGGCGCACAATTTACTTGACCAACCGCCCTCCCTATTCACACTCCAAATTGGCGATGTTTTGTCG CCATGCCATCAAACGAAGTTGTGGTCATTTGGAAGACATTAGTATTGAGGGTATTGGCACTGATGAAGTCCTCAAATACA TTGCTGATAGTGGAAGTCACCTAAGACGGATTTGTCTTTTAAAATGCTGGGAAATTTCAGACAAAGGGTTGAGAGAGGTT GTGAAGAAGCTTCCACTGCTGGAAGAGTTTGAAATTTCATTCAGCTGCCTATCTAAGGATACTTTGGAACTTATGGGAAA ATGTTGCCCAAATTTGAAAGTGCTGAAATTTAACATGAAGGAATATAAAGGCTTGAAGTCTGATGCTGAGGCGTTTGCTA TTGCAAAAACCATGCCTCAACTATGTCATCTCCAGCTTCTGGGAAACAGGCTCACTAATGAGGGCTTGCTTGCCATTCTT GACGGATGCCCTCATCTTGAATCTCTTGATCTGCGTGTTTGTTCCAATGTCGATTTGAGCGGAAGTTTGAGGGAAAGGTG CTGTAAGCAGATCAGAGATTTACGATTTCCAGAAGACTTGAGTGAAGTTTCCACCTATGTTGAAGATGAACAACCTGATT ATGATTATTATTTTGAATGTGACTGTGGATGCGACTGTGACTGGAGCAATGAAGGGGACGATAGGGCAAATGATGAATAT ATCATCGCTGACTATTATGGTCTATTATGA
Protein sequence (LotjaGi6g1v0057900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPLMWRTIYLTNRPPYSHSKLAMFCRHAIKRSCGHLEDISIEGIGTDEVLKYIADSGSHLRRICLLKCWEISDKGLREV VKKLPLLEEFEISFSCLSKDTLELMGKCCPNLKVLKFNMKEYKGLKSDAEAFAIAKTMPQLCHLQLLGNRLTNEGLLAIL DGCPHLESLDLRVCSNVDLSGSLRERCCKQIRDLRFPEDLSEVSTYVEDEQPDYDYYFECDCGCDCDWSNEGDDRANDEY IIADYYGLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 2 | 231 | 230 | 3.3E-67 | – | |
PANTHER | 2 | 231 | 230 | 3.3E-67 | – | |
Gene3D | 18 | 122 | 105 | 6.3E-16 | ||
SUPERFAMILY | 28 | 194 | 167 | 1.67E-18 | – | |
SMART | 34 | 57 | 24 | 410.0 | ||
SMART | 58 | 83 | 26 | 1.6 | ||
Gene3D | 123 | 206 | 84 | 2.6E-10 | ||
SMART | 138 | 162 | 25 | 45.0 | ||
SMART | 163 | 186 | 24 | 610.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0057900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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