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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0058900 |
| Transcript ID | LotjaGi6g1v0058900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | C2 domain-containing protein; TAIR: AT3G17980.1 Calcium-dependent lipid-binding (CaLB domain) family protein; Swiss-Prot: sp|Q9LVH4|CAR4_ARATH Protein C2-DOMAIN ABA-RELATED 4; TrEMBL-Plants: tr|A0A151U9Q5|A0A151U9Q5_CAJCA Putative ADP-ribosylation factor GTPase-activating protein AGD13; Found in the gene: LotjaGi6g1v0058900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10755109..10756084) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTCATGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAGTGGAATGATGATTTGACTTTATCCA TTGTAGATCATCGTGACACAATCAAACTAGTAAGTAACTTTTCTTGTAACAGTGTGTTTTTCAGAGCAAAAGTTGGGTTA ATTAAAACATGAAAGTTGCATTAGCTACCTGTATGCATATCAGTGTTATCAGGTGACTGATGACAGTAGTCAATATGAGA TTTTTCAATGTCGCAGAAACTTGATCTGAATATGACAGAACACCAAAACCATACAAACATTATCTTAGAATCAAAATGTT AAATTTTTGGGATTCAGAACATCGTCATATGTGGGGCTAGACGGCTAGTTGCTGAAACACTGGATATCTTTGTTACTTAC TGTGCCTATTTTTGGATTAGTTTGGATTTCAGCAGAGCATTCATGCAGCCGAGTATTTTTAGCTGTATGATCTCAATTGC ATGATTCACATTTCAACTTGTAATAGTAAAATGCAATAGCAACTTGGAATGTGAGTCATCCGATCTTAATCAGACTAAAA ATATACTTGAATGCGTGAATGCAGTTCCCCTGACCGGAATCCAAATTCTTCAACTTATCTGCACATTGACATTCGATACA GAATTCAACACTGAGCACTAATTTTACTGTCTTGTGATGATGCAGTTTGTGTATGACAAGGACCTATTCAGCTTGGATGA CAAAATGGGGGATGCTGAGTTTGAGATTGGTCCATTTATCGAAGTGGTGAAGATGCGGTTGCAAGGTCTCCCTGATGGCA CCATAGTTACCAGAGTGCAACCTAGCAGACAAAATTGCTTAGCTGAGGAGAGTCACATTGTGTGGAAGGATGGGAAAGTT GTCCAAAACATGGTTCTGAGACTTAGAAATGTTGAGTCTGGGGAAGTGGTGCTTCAGTTGCGATGGATTGACATTCCTGG TTCAAGGGGTGTCTAG
CDS sequence (LotjaGi6g1v0058900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGAAGCTGAAGACTCGGGTAGTGAAGAAGAATCTAAATCCTGAGTGGAATGATGATTTGACTTTATCCATTGTAGA TCATCGTGACACAATCAAACTATTTGTGTATGACAAGGACCTATTCAGCTTGGATGACAAAATGGGGGATGCTGAGTTTG AGATTGGTCCATTTATCGAAGTGGTGAAGATGCGGTTGCAAGGTCTCCCTGATGGCACCATAGTTACCAGAGTGCAACCT AGCAGACAAAATTGCTTAGCTGAGGAGAGTCACATTGTGTGGAAGGATGGGAAAGTTGTCCAAAACATGGTTCTGAGACT TAGAAATGTTGAGTCTGGGGAAGTGGTGCTTCAGTTGCGATGGATTGACATTCCTGGTTCAAGGGGTGTCTAG
Protein sequence (LotjaGi6g1v0058900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQKLKTRVVKKNLNPEWNDDLTLSIVDHRDTIKLFVYDKDLFSLDDKMGDAEFEIGPFIEVVKMRLQGLPDGTIVTRVQP SRQNCLAEESHIVWKDGKVVQNMVLRLRNVESGEVVLQLRWIDIPGSRGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 52 | 52 | 10.708 | ||
| Gene3D | 1 | 128 | 128 | 6.6E-15 | ||
| PANTHER | 2 | 130 | 129 | 8.1E-63 | – | |
| PANTHER | 2 | 130 | 129 | 8.1E-63 | – | |
| Pfam | 2 | 57 | 56 | 1.3E-11 | ||
| SUPERFAMILY | 3 | 124 | 122 | 6.25E-15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0058900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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