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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0059200 |
| Transcript ID | LotjaGi6g1v0059200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium binding family protein; TAIR: AT1G18210.1 Calcium-binding EF-hand family protein; Swiss-Prot: sp|Q9LE22|CML27_ARATH Probable calcium-binding protein CML27; TrEMBL-Plants: tr|I1LMD7|I1LMD7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0059200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:10797485..10797904) extracted from Lotus japonicus Gifu genome v1.2.
ATGGACAACGAGGTACGCGAGATCTTCAAAAAGTTCGACAAGAACGGCGATGGGAAGATCTCATGTTCGGAGCTCAAGGA CCTGATGGCGGCGATGGGATCCAAGACGACGGCGGAGGAGGTCCGCCGCATGATGGCCGAGCTTGACCGGAACGGCGACG GCCACATTGATCTCAAGGAGTTCGGCGAGTTTCACCGCGGCGGCGGCGGCGGAGATTCGAAGGAGATCCGGGAGGCGTTT GAGATGTATGAGCTGGACAAGAACGGGCTGATTTCAGCGAAGGAACTGCACTCGGTGATGAGGAAATTGGGGGAGAAGTG CTCGCTTGGTGATTGCCGGAAAATGATCGGAAACGTGGATGCCGACGGTGATGGTAATGTGAATTTCGAAGAGTTCAAGA AGATGATGAGTCGCTCCTAG
CDS sequence (LotjaGi6g1v0059200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAACGAGGTACGCGAGATCTTCAAAAAGTTCGACAAGAACGGCGATGGGAAGATCTCATGTTCGGAGCTCAAGGA CCTGATGGCGGCGATGGGATCCAAGACGACGGCGGAGGAGGTCCGCCGCATGATGGCCGAGCTTGACCGGAACGGCGACG GCCACATTGATCTCAAGGAGTTCGGCGAGTTTCACCGCGGCGGCGGCGGCGGAGATTCGAAGGAGATCCGGGAGGCGTTT GAGATGTATGAGCTGGACAAGAACGGGCTGATTTCAGCGAAGGAACTGCACTCGGTGATGAGGAAATTGGGGGAGAAGTG CTCGCTTGGTGATTGCCGGAAAATGATCGGAAACGTGGATGCCGACGGTGATGGTAATGTGAATTTCGAAGAGTTCAAGA AGATGATGAGTCGCTCCTAG
Protein sequence (LotjaGi6g1v0059200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNEVREIFKKFDKNGDGKISCSELKDLMAAMGSKTTAEEVRRMMAELDRNGDGHIDLKEFGEFHRGGGGGDSKEIREAF EMYELDKNGLISAKELHSVMRKLGEKCSLGDCRKMIGNVDADGDGNVNFEEFKKMMSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 67 | 67 | 4.5E-23 | – | |
| ProSiteProfiles | 1 | 35 | 35 | 16.606 | ||
| PANTHER | 2 | 139 | 138 | 9.6E-80 | ||
| PANTHER | 2 | 139 | 138 | 9.6E-80 | – | |
| Pfam | 3 | 63 | 61 | 6.0E-14 | ||
| SUPERFAMILY | 3 | 138 | 136 | 2.23E-42 | ||
| CDD | 4 | 61 | 58 | 1.06555E-16 | ||
| SMART | 4 | 32 | 29 | 1.2E-7 | ||
| ProSitePatterns | 13 | 25 | 13 | - | ||
| ProSiteProfiles | 36 | 71 | 36 | 13.955 | ||
| SMART | 40 | 68 | 29 | 7.1E-4 | ||
| ProSitePatterns | 49 | 61 | 13 | - | ||
| Gene3D | 72 | 138 | 67 | 1.8E-22 | – | |
| ProSiteProfiles | 72 | 106 | 35 | 12.031 | ||
| Pfam | 74 | 137 | 64 | 4.2E-11 | ||
| SMART | 75 | 103 | 29 | 8.3E-5 | ||
| CDD | 75 | 137 | 63 | 5.40211E-16 | ||
| ProSiteProfiles | 107 | 139 | 33 | 12.421 | ||
| SMART | 111 | 139 | 29 | 1.4E-5 | ||
| ProSitePatterns | 120 | 132 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi6g1v0059200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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