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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0061700 |
| Transcript ID | LotjaGi6g1v0061700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XH/XS domain protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I3T0Y8|I3T0Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11204457..11210151) extracted from Lotus japonicus Gifu genome v1.2.
CTTCACTCCTCCCATTTTCAACCATACTTAAGCCACTCTTGTTCACATTTCTTAAACGCTCTTTCCTCTTCTCTTTCCAG GTAGTATTATTGCATCACTCAGAAAGTATTTTCAGCTTGTTCATTTGCATGTGAGCATTTGGTTAAAATTAAATGTTTAG TTGTCATATTTTGCAGGTTCTTTGAGTTTCCATCATCAACATGGCTGCAGAGACACCTTCGAGTAAACAAAGCAAGGCTT TTGCAAGTCTTCAGAAGTCCATCGAACGCCAGAAACATAAAATTACTGATGTGGAGCTTAAACATAATAGTGACAAAGCT GCCTCTGTGACCAAACTCAAGGAATTTTCTGACATGTTTATCAAGATCACCAACAAAGAATCTACTCTCCATGAGGACTG TCAAAAAGGTAGTATATTATAATGTGATATGTTATTTCTTTGCTTGCAAGGATAGATTTTAAACATCAAAAGATTTTTTT CTTGAAAGGAAATGCTAACGGTTCATGTTTCTTTTCTGAATATTGCTTTCCTCCAAACATTGCTTCATTATCTTCTATTG GTTAATTTAATGATTGCAGATTTATGGCATTGGCATCAATTCCTATTCAAAATTAACTGTAAAATAAATTTTTTATGGCA AATGGAGGTCCTGAACTTGGATCCCCTAGGGTTTCCAGAGTCACAAACCGTTGGGGAGGATTGGACCAATTTTCATAACA AACTAAAAATAAATTGATTTAGCAATTGGGTTCAAATTATGTTAATTCAAATAAGTTTAGGTCAAAAGGGTTGCCATGTT AGTCGGCTGAGAAACCAATGCAATGATTCCCTAAATAAGTGATTACTCAAGGAAAGGTTCCTCAATGCATATTCTTAAGT CACCCACAGGAAACTCTTAGTTATTGCTATTGAGAGGTTGAAGATGAAGTTGCTGAATGCAATTAATTAAGTAAAGGAGA ACAAATGGCTAATGAATAATTGAAATCACTAATGATAAAGCATAAAACTTAAATTAAAGAACTAAGAAAAATATATGAAA TTTGGGAAATTTGTATGTTTTGATTGTGTATCTCTACAAATAACCTTATTATTTATAGGGAGAATTCGGCTCACTACAAC CGTTGCCCATGCACCCAACCACTAACCCACATCTTAGGTCCCATATAAGCCACTACAATCGTGGGATGTTAATGCCTTCT CACTCCTCGCCAGCTCAGAAGATTCCTCTGATTGTTCTTCCTTTTATTGGCTGATTCCTGTAACAAAACGCTCATATTTT TAGAGAATAGGATCCATATCCAATATTCCATGTGATTAAAACCTAGCTTCTAACTGTAGTACTGTAAATATCTTTCCTTT CAATAGTATATGATCAGTGAGCATCTTCGGCTTCTTGTCCAATAGTATATGATCTTCCTTTCTCCATTTTTCTAGGGATG TGGTATTGTATCCAAGTAACATAGAATAAATACATTGAATATGATTAGGATTTAATCGAAGATTCCTGGTTTATGTGACC ATTTTTTTACAAAATTCAAGGATTCCATATCCCCTATACTTGTGGAAATGACTTATTTTACAGTACTCGACTTCTACCTT TGTTGATTCAGGTCTTGATCTTCCATATTCATGCTTCTTCTGTGACATGGAAATTATTTCTGCACATTTTCTGTTTTTTT TTTTCTATTCGAGACTAAGAGAGACATAGAGTTAGCGTTAAAAGAGTTGGTTAGTGTTAGTTAGCAGTGAGTTAGCATGT AAAACAGGATTGGTTAAAGTTTGTGAGAAGGTTGTTAAAGCTCTTACATTACACATTGTATAAAATCACAATCTAGCTCT TTTGGTACTCGCCTGAAATATTGAAGATTGTTCAGTTCACACTTTTTCTCTCTGTGTTCTCTTCAAAATTCTCTCTTCCT CTTGGATCTACCATTTCAGATATGTTCTGTTCAAAACTTCAACTTACACTTCCTACTTTTCAGAATTACAACAGTTGAAA GTCATGAACTCTGGTATGAGTGATGACATGGAATGTATTAAGAAAGAAGTTGAGCAGATGACGAAGGAATTGGAAAAGAG TAAGATCATAAAGGAAAAACTTAAGCAGATCACTAAGGAATTGAATACGGTGAAGAGCCAGAATGTTCTGCTTCAGCTGA TTTACAGTGACTATACTGAGAGGGCTCGAAAGGTCAGTCACTATAATTACCTTTGGAATGTATGATTTACTTGTTAGAAG CTAGTTCAGTTTTGAATTATGAAAAGAGTGCTGCTGCGTGTTACGAATGGAATTTGGATTCTCTACAGATGATACAGATG AGAAAGGAATTGGAGGAGAGTAAAAAAATAAAGGAAAAACTTGAGCAGACCACCAAGGAATTGGAGGAGAGTAAAAAAAT AAAAGAAAAACTTGAACTGATCTCTAAGGAATTGGAGGAGAGAAAGTCCCTGAATGATCTGCAGCAAAAGAATTTTACAG AGAAGACTCGAAAGGTCAGTGGCAGTTCTTTGGTATGAAACAACAAAATGAGCATAAAGATGTTTTGAAATTGACTGAAG ATCTAAAGGTTCTTATCTGTTTTTGTGCTTTGTAAGCAGATTTAATAATGAGAATAGCATAATGTTCAATGGATTTGATT GTCTATTTATCCAGGACAAAAAGGAACAACTCAATGCCAAAACAGTTCAGCTCGAAAAACAACAGAAAAGTAAACAAAAG CTGGAATTGGAGAATCATCCGCGTAAAAGAAAGTTAGAAGTCATGAAGAACATGGAAGATGAATCTCTGAAGACGGTAGG TAATTTACAAACAAATTTAATGGAAAAGGAACAGTTACTTCAGGAGTTACAAGATTATTGCCAATCAGTGATCACTAAAG AGCGTCAGAGCAATGATGAGCTTCAGAAAGCTCGAAAAAGAATGATTGAGGTAAGTGTTTTGGATCTTTTTAACGATGTG TCTGTTTCTATTAGGTCCAGTTTTTTATTGTTACTTGAATTTTTCAGTTATGATTTGTGGATTATAACGATATTGGTCAT GTAATTGATATGATTTTCTCTTCTAGTGGTATGCCATTTTAATACAAATATACAATACTAGTTGATTGATGAAACTGCTT TGGATTTCGCACGATTCCAGAAATGAAACTTGCTTGGAAGTACACAAGTGATGTTATAAATTTAATCGTTTGGGCAGTGC ACTTCCTCTTTTTTTTTTTAAAGCTTGAAAAAGCACTAAAAATGGTACAAGGGGCACCATAATCCATATACAAAACTAAC CTGTTACGCACAATGAAGTGTGCCTATACCAGTCAACAAATGTTAAACTAAAGCCCTTCAACCTACACCTAAGCTAAAAC CAAGCTAAAGCCTTCACTCTTTTCCAAAATAGATGCAATTTATGAGCTATAAAATCATTGCGAGCACCCCAAATGGATTA AAAGGTAGCGAATCAAACAGCTATCAACACCCTCCTTGGGAGATTACCACCCTACACTCATGGAGTGTTGTGTAAACTCC AAGCTGATTAAGACAATGTTGTCAGATAGAAGCAGAAGCTGAACAAGTAAACAAAACATAAAGAACACGATTCATGACCT TAATTACATAAAGGACATAAAACACTTCAATTCTCCTAAGCAAACCCTATCCAACAAATTATCCATTGTCTGCTACCTTC CAAGATAGGCTTTCCAACCAAATGCTTAAACTTTTGATGGAACAATATTTGTCCAAAGAAGCTTTAGGTACGCACTATCC ACACTTCTAGAAGTTTGTTGCAAAGAGACATAAGCTGAACGCACTGATGTATCAGTAACTTCCTACTTGGGTGTATTTTG GCTAATAACCTGCAACAAATAGTCAAAGAGCGGTCCTTCCAATTAAAAATTCCCTTCTCCAAACCATATCCCACCTCCAA ACACCATTTTCCCACTTACCAATCTCACTCACCTTACCTTCTTTTTGCTCAGAGATTGTAAACAATGTAGGAAATTTACT ACACAACACATCTTTCCCAACCCATCGGTCTAACCAAAACCGTGTCCTGCCTCTATTCCCCAACATAATTAACAAGTTTT TTTGGTAGAAGTAATCGATGCCCTCCCAACAAATATCCTTTGAGACACCTCTACTTCTTTGTTGTTAGTTTTTATAGTTT GAATTTCAGAAACAATGAGGATTTCTCCAACATAATTGACATGTATTACTAAAATGTATTTGATGGTCCATTTCATTATA TTGAATTGCTTAGTTTACGTGAGTTTTTTTGGCAGTGTGGATATATTTACTGCTCATTTGTTATTCATCACAGATTTTAT GTGCTCTTTCTTTCACTTTTTATTTCCCACAAACTTTTTGTTATCTCTATTAATAATGTCTTTCTCTCTTGCAGGGAATT GCAGGAAGGTCAAGTCGTTGTGCCAATATTGGTGTAAAGAGAATGGGGGAACTGGACAATGGGCCATTTCTTAAAGCTTT GCGTGCGAAGCAAAGAAATTATACGCAGAGAGCTGCAACATTGTGTTCTGTGTGGGAAAATAATCTGAAGGACCCCCATT GGTATCCATTCAAAATAATTACAATTGGTGGGGAATCAAAGGTGGACCTTTGCTAGACAAACACATCTCTTAAACTTTGC TTGATATATATAATTTTCTTGTCATCTAGTCTTAATTGAATGTGTTTCATCCAGTTACTTATTTGTAAACTGTTCCTTTT CTTATAGATACTGATGAATATCCTTTTTTGTCCTTGCATGCATTGGAGTTATATAATATACATATCAGAATATATATTTA GAGCAATGTTAAAGTGAATGTGTCATAAGTAGAGTTGGAATGACAGACAAAATGAGGTGTGAAAGTGTCAAAGTTACAAT GGCGTAAGCTCTCAAAATCTAATTGTACAGAACAACATTCTTTTTTTTGTCATACTCTCAAGTAGATTCTTTTTCTTTTG TGCATTTATATTGCATTATATTTTTATTGGTAAAATTCATAAGTAATGCTTACATTTCATTTACTTTGCTATCTGGTTTG ATTTTATAATTTTAGGAAATTATAGATGAAGAAGATGAAAAGCTGAAACGACTGAAAAGGGACATGGGTGCTGGGCCATA CCAAGCGGTGGTGAAAGCTTTGACAGAGATGAATGAGTACAATCCTAGTGGGAGATCTGTGGTCTCAGAGCTATGGAATC ATGGAGAGAACAGGAGAGCAACTTTGGAAGAAGGGGTTGAATTTCTATTTGGACATTGGAAAACAAAAAAGCAGAAAACA CATCAAATGGGGACAGATGATGATAGTGAGGATGCTTATCAAAGAAAAAATGGTAGTGAGGCCGGATAGCGATAATGATG ACGATCAGGTGCCTCCCGCCGATAATAGAGTTAGTCACTCTGGTGAAGCATCGCCTAGTGTAACTCATATTGCTTTGCCT CTAACTTCCAAGTAAGTTGTGAAATATGGGAAGGTTGATAGGTAATGAAATTAAGGTAGTGCTTTTGTTTTGAACATTTT GAGCTAGTAGGAAAAAGATTACAAGGGCTAGTTGGTATGAGCTTTGTTTTGGTGTATATGTGTACATGTAGATGTGGCTA GTTGGTATGTAGCTTGCTATCCTTGTTTGTTACTTCACTGGTGTGGGTAAACACATGGATGTTGAACTTTGAATGACTAT ATTATGTGCCTTTTG
CDS sequence (LotjaGi6g1v0061700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAGAGACACCTTCGAGTAAACAAAGCAAGGCTTTTGCAAGTCTTCAGAAGTCCATCGAACGCCAGAAACATAA AATTACTGATGTGGAGCTTAAACATAATAGTGACAAAGCTGCCTCTGTGACCAAACTCAAGGAATTTTCTGACATGTTTA TCAAGATCACCAACAAAGAATCTACTCTCCATGAGGACTGTCAAAAAGAATTACAACAGTTGAAAGTCATGAACTCTGGT ATGAGTGATGACATGGAATGTATTAAGAAAGAAGTTGAGCAGATGACGAAGGAATTGGAAAAGAGTAAGATCATAAAGGA AAAACTTAAGCAGATCACTAAGGAATTGAATACGGTGAAGAGCCAGAATGTTCTGCTTCAGCTGATTTACAGTGACTATA CTGAGAGGGCTCGAAAGATGATACAGATGAGAAAGGAATTGGAGGAGAGTAAAAAAATAAAGGAAAAACTTGAGCAGACC ACCAAGGAATTGGAGGAGAGTAAAAAAATAAAAGAAAAACTTGAACTGATCTCTAAGGAATTGGAGGAGAGAAAGTCCCT GAATGATCTGCAGCAAAAGAATTTTACAGAGAAGACTCGAAAGGACAAAAAGGAACAACTCAATGCCAAAACAGTTCAGC TCGAAAAACAACAGAAAAGTAAACAAAAGCTGGAATTGGAGAATCATCCGCGTAAAAGAAAGTTAGAAGTCATGAAGAAC ATGGAAGATGAATCTCTGAAGACGGTAGGTAATTTACAAACAAATTTAATGGAAAAGGAACAGTTACTTCAGGAGTTACA AGATTATTGCCAATCAGTGATCACTAAAGAGCGTCAGAGCAATGATGAGCTTCAGAAAGCTCGAAAAAGAATGATTGAGG GAATTGCAGGAAGGTCAAGTCGTTGTGCCAATATTGGTGTAAAGAGAATGGGGGAACTGGACAATGGGCCATTTCTTAAA GCTTTGCGTGCGAAGCAAAGAAATTATACGCAGAGAGCTGCAACATTGTGTTCTGTGTGGGAAAATAATCTGAAGGACCC CCATTGGTATCCATTCAAAATAATTACAATTGGTGGGGAATCAAAGGAAATTATAGATGAAGAAGATGAAAAGCTGAAAC GACTGAAAAGGGACATGGGTGCTGGGCCATACCAAGCGGTGGTGAAAGCTTTGACAGAGATGAATGAGTACAATCCTAGT GGGAGATCTGTGGTCTCAGAGCTATGGAATCATGGAGAGAACAGGAGAGCAACTTTGGAAGAAGGGGTTGAATTTCTATT TGGACATTGGAAAACAAAAAAGCAGAAAACACATCAAATGGGGACAGATGATGATAGTGAGGATGCTTATCAAAGAAAAA ATGGTAGTGAGGCCGGATAG
Protein sequence (LotjaGi6g1v0061700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAETPSSKQSKAFASLQKSIERQKHKITDVELKHNSDKAASVTKLKEFSDMFIKITNKESTLHEDCQKELQQLKVMNSG MSDDMECIKKEVEQMTKELEKSKIIKEKLKQITKELNTVKSQNVLLQLIYSDYTERARKMIQMRKELEESKKIKEKLEQT TKELEESKKIKEKLELISKELEERKSLNDLQQKNFTEKTRKDKKEQLNAKTVQLEKQQKSKQKLELENHPRKRKLEVMKN MEDESLKTVGNLQTNLMEKEQLLQELQDYCQSVITKERQSNDELQKARKRMIEGIAGRSSRCANIGVKRMGELDNGPFLK ALRAKQRNYTQRAATLCSVWENNLKDPHWYPFKIITIGGESKEIIDEEDEKLKRLKRDMGAGPYQAVVKALTEMNEYNPS GRSVVSELWNHGENRRATLEEGVEFLFGHWKTKKQKTHQMGTDDDSEDAYQRKNGSEAG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 184 | 181 | 7.3E-98 | – | |
| PANTHER | 4 | 184 | 181 | 7.3E-98 | – | |
| Coils | 78 | 122 | 45 | - | – | |
| PANTHER | 115 | 436 | 322 | 7.3E-98 | – | |
| PANTHER | 115 | 436 | 322 | 7.3E-98 | – | |
| Coils | 130 | 184 | 55 | - | – | |
| Coils | 200 | 227 | 28 | - | – | |
| Coils | 249 | 269 | 21 | - | – | |
| Pfam | 308 | 436 | 129 | 2.3E-48 | ||
| MobiDBLite | 433 | 459 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0061700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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