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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005379
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 40 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.966s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0013419.1
n.a. Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| chr0 5061714 5069034 +
2 domain predictions
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Lj0g3v0020739.1
n.a. PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1| chr0 8323867 8329526 -
2 domain predictions
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Lj0g3v0079579.1
n.a. Os01g0126600 [Oryza sativa Japonica Group] gi|115434280|ref|NP_001041898.1| chr0 30778419 30778719 +
2 domain predictions
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Lj0g3v0079859.1
n.a. PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1| chr0 30840862 30844203 -
2 domain predictions
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Lj0g3v0103809.1
n.a. factor of DNA methylation 1 [Arabidopsis thaliana] gi|15218369|ref|NP_173043.1| chr0 44300120 44303981 +
2 domain predictions
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Lj0g3v0180009.1
n.a. Os01g0147700 [Oryza sativa Japonica Group] gi|115434512|ref|NP_001042014.1| chr0 87499096 87499899 +
2 domain predictions
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Lj0g3v0240679.1
n.a. PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1| chr0 124907360 124910701 -
2 domain predictions
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Lj0g3v0241289.2
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 125145050 125153110 +
2 domain predictions
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Lj0g3v0241299.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 125160764 125162313 +
2 domain predictions
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Lj0g3v0241319.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 125164968 125167232 +
2 domain predictions
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Lj0g3v0263719.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 136727889 136733291 -
2 domain predictions
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Lj0g3v0275119.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 142707483 142711036 +
2 domain predictions
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Lj0g3v0275139.1
n.a. XH/XS domain-containing protein isoform 1 [Theobroma cacao] gi|508726133|gb|EOY18030.1| chr0 142720750 142723843 +
2 domain predictions
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Lj0g3v0275159.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 142729217 142731716 +
2 domain predictions
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Lj3g3v2168470.1
n.a. XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| chr3 26838224 26846273 -
2 domain predictions
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Lj3g3v2168470.2
n.a. XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| chr3 26838224 26852404 -
2 domain predictions
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Lj6g3v1880230.1
n.a. PREDICTED: cingulin-like protein 1-like [Cicer arietinum] gi|502081888|ref|XP_004487000.1| chr6 20721587 20723185 -
2 domain predictions
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LotjaGi1g1v0089300.1
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 LjG1.1_chr1 13023017 13031570 -
2 domain predictions
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LotjaGi1g1v0089300.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 LjG1.1_chr1 13023386 13031537 -
2 domain predictions
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LotjaGi1g1v0575900.1
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900 LjG1.1_chr1 111264383 111273241 +
2 domain predictions
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LotjaGi1g1v0575900.2
n.a. XH/XS domain-containing family protein; TAIR: AT1G13790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LMH6|FDM4_ARATH Factor of DNA methylation 4; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900 LjG1.1_chr1 111265141 111273361 +
2 domain predictions
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LotjaGi3g1v0350700.2
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72958961 72967005 -
2 domain predictions
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LotjaGi3g1v0350700.3
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72958965 72966798 -
2 domain predictions
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LotjaGi3g1v0350700.4
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72959798 72965992 -
2 domain predictions
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LotjaGi3g1v0350900.1
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350900 LjG1.1_chr3 72971037 72977190 -
2 domain predictions
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LotjaGi6g1v0061200.1
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 LjG1.1_chr6 11130121 11138984 +
2 domain predictions
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LotjaGi6g1v0061200.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 LjG1.1_chr6 11131424 11137644 +
2 domain predictions
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LotjaGi6g1v0061300.1
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139672 11153642 +
2 domain predictions
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LotjaGi6g1v0061300.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139672 11153642 +
2 domain predictions
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LotjaGi6g1v0061300.3
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139855 11150919 +
2 domain predictions
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LotjaGi6g1v0061300.4
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139961 11149816 +
2 domain predictions
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LotjaGi6g1v0061300.5
n.a. XH/XS domain protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LHB1|FDM3_ARATH Factor of DNA methylation 3; TrEMBL-Plants: tr|I1MZC5|I1MZC5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11146264 11153471 +
2 domain predictions
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LotjaGi6g1v0061400.1
n.a. XH/XS domain-containing protein, putative; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|A0A151RQC3|A0A151RQC3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061400 LjG1.1_chr6 11161399 11171381 +
2 domain predictions
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LotjaGi6g1v0061500_LC.1
n.a. Factor of DNA methylation 2; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|K7MPS1|K7MPS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061500_LC LjG1.1_chr6 11174673 11178122 +
2 domain predictions
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LotjaGi6g1v0061700.1
n.a. XH/XS domain protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I3T0Y8|I3T0Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061700 LjG1.1_chr6 11204418 11210193 +
2 domain predictions
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LotjaGi6g1v0061700.2
n.a. XH/XS domain protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I3T0Y8|I3T0Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061700 LjG1.1_chr6 11204457 11210151 +
2 domain predictions
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LotjaGi6g1v0061800.1
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|A0A151RQB2|A0A151RQB2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061800 LjG1.1_chr6 11243618 11247504 +
2 domain predictions
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LotjaGi6g1v0061900_LC.1
n.a. XH/XS domain protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LHB1|FDM3_ARATH Factor of DNA methylation 3; TrEMBL-Plants: tr|A0A151RQB2|A0A151RQB2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061900_LC LjG1.1_chr6 11263791 11266847 +
2 domain predictions
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LotjaGi6g1v0181600_LC.1
n.a. XH/XS domain-containing protein, putative; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|A0A151RQC3|A0A151RQC3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0181600_LC LjG1.1_chr6 47375496 47377213 -
2 domain predictions
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LotjaGi6g1v0205100_LC.1
n.a. XH/XS domain-containing protein; TAIR: AT3G12550.5 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LHB1|FDM3_ARATH Factor of DNA methylation 3; TrEMBL-Plants: tr|K7MD03|K7MD03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0205100_LC LjG1.1_chr6 50223929 50224364 -
2 domain predictions
 –