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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0061800 |
| Transcript ID | LotjaGi6g1v0061800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|A0A151RQB2|A0A151RQB2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0061800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:11243618..11247504) extracted from Lotus japonicus Gifu genome v1.2.
ATAATAAATAGTCATATGTGCAGGCAGTTATTTTGAGTTTGTGTGAAGATGTCAAACCCTAGGAGTAATGGTGGTGCAAG CAAGCAAAGCAAGGCATTTTCAAGCCTTCAGAAGGAAATCGAACAACAGAAGCATAAAGTGAATGATGTGCATCAAAAGA ATAATGAGACAGCTATGTTCTTGAGCAAACTCAAAGACTCTTTGAAAACGGTCATGGAAATGGCCAACAAAGAAGATACA CAGCGTGAGGAATGTGACAAAGGTATCTATCTATTTACACTATATATATTTACATGAAGATAATAGAGATCGTTAGCATT ATATAAGAGTGTGTCCATATATATTTATATTTATTTGTATTTCATCCTTTTGTTATGTATTTTCTCTTTGCCTTTGGGAA AAAAAATGAAATTGAGATCGAGGTTTCCTGTTTTTTCAATATATTTCCAAATTTTACATGAAATCCATTTTGGGTTACTT GGATGGCGTTTCTGGTATGACATTCTAAGAAAGAACAAATTGTTAAACTAAGGGGGCGTTTAGTAGAGGGTTTGAAAATA GACTCTGAATGCTATATTTCGGTATAATTTATTCCTAGGTAAACATGTGTTGAGTTTTAAGCAACCTGAGTCTTAGACAT ATCTTCTGCGTGCCGTGCCATAAAATTCTCCACAACATCTGCTTATAACACACTTAACATGTGTTTATGTTAGATTATGT AGCTTTTGTGTGCCATTAAAAATGAGGGTATTGTATCAAAGTAACATCCAATGGAAATACTGAATATTATAACAATTGAA CAAGATTGCTGGTTATGTGATAATTTTCTGCAATTTTCTGGGATTGCTTGTTACAAAATATTATTGTGAAATGTTTTTAC TTGTTTTCTAATTTCTATATTTGTCCTGTGCTAAACTTAAAATTTCATTTATACTTTGTCAGAACTACGACATATGAAGT TCTTGATCTCTAAAATGAGTCATGACATGGAATGTGTCAAGAAAGAACATGAGCAGATCACCAAGGAGCTGGAAGAGAGC AAATCTCTGAATGAACTGCAGCTGAAAAAGTTTACTGAAGAGACTCGTAAGGTCAGTGACCTTTGGATGTGTCATTAACT TCTTGGAAGTTGAATAGTTCTATTTATGCTCAAATATCAACCCCTTGTAGCAGGTTGAATGTACTTAAGATTCTTTTAGA TGGAATTATTTAATACTGCAGGTTTTTTGTTGTGTTTTCAGAATTTAAAGCAAATTAGCTCTCTGAAGATGGCTGTTCAG AAGCAAACTGGTCATACAAATGTATCTACATTCTCTGAAGATCTTAAGGTGATAGTGTTACCTATTTCTAAGCTTTGTAG TTGTACATGGCGTTAAGTATCTTTGGCAGTATGAGAATAACATTGTTTATCATATTTGATTATCTATTTTTTCAGGGCCA AACTGACCAACTCAATGCCAAAATAGTTGAACTTGAAAAACAATTGGAAAGCAAACAAGAGATGGAACTGGAGAATCAGC AACTTCAAGAGAAATTAGATGTCATGGAGCACATGGAAGGTGAATTTCTGAAGATGGTGGCTGATTTACACATAAATGTA GCGGAAAAGGAACGGGCACTTCAAGCCTTAGAAGAATATAGCCAAGCACTGACAGTTAAAGAGCGTGAGAGCAATGATGA GCTTCAGAAAACTCGAAAAAGAATGATTGAGGTAAGTTTTTTTCGATTTCTTAAAAGATGAATCTCCGATTAGGCTATTA GTAGAGTTATGATTCTTTGAATGAGATCTGGACAATATATATATATGTTCTGTTAAGTTCAGTTCTTTAGTTTTATTTGA AATATTTGGCTATCATTGAAAACTTGGTCATGTACTAGCTTGATGATGATTTTGCTTTTCTCTTTGATGTGCTATGCAAT GTCAATACTATATTAGTTGATTACTTGATTGATGAAACTGCCTTGGACTTCTCACAATTCAAGAAATGAAGCTTGCTTTG AAGTGCACATGTGATGTTGTAAATTCACATTTTTTGGGTTGTGCACTTCCTCTCAATTGTTAGTTTTCACAGTTTGAATT TTAGAGAAGATGAGGATTTCATGGTTGTTAGTCTGTTGTATTGACATGTATTTCAAAAATGTTTTTGATAGTCCATTTCA TTATCTAGACTTGCCAAGTTTGAAGGTTTTTTTCCTGGTTAGTTTTGATATTTACTGCTGATTTGGTATTCATCATAGAT TGGGTTAATGGTCAAATTGCGATTTTGTAAGCGAGTTTGATTTTGGTCCATCGGTGGAAAAATGATGTTTAGTGACAGTC ATTTTAGAATTATTGGTTGTTTTTTACTGCCACTAAACATCATTTTTCCGTCAGATGACTAAAATTAAACTGGCTTACAA AATAAGGAACAATTTGACCATTAACCCTCATAAATTTTATGTTTTGAAAGTTTCTCGCGTTTAGCTAGAAAGCTTTCTTT GAGTCCTTTGTATGCACAACAAAGAGCACCTGTTGTTGGATGATTTGCATTCAAATGGGATTGTCATTTTTCTTTCCATA ACTTTTGTTAGATCTATTAATAATCTCTTTCAATCTTGCAGGGCATTGCAGGAAGACCTAGTCGTGGTGCCAACATTGTT GTGAAGAGAATGGGGCAAGTGGACTCAAGGCCATTCTACAAAGCTTTGTATGCAAAGAGAAAATATAGCAAGGAGGAAGT AGCTGAGAGAGCTGCAGAAATGTGTTCTGTGTGGGAAAATAATCTGAAGGACCCCCATTGGTATCCTTTCAAAATAATCA CATTTCGTAATGGACCAAAGGTGGACAACAAACATGACACTATTTTGAGATTCAATTTTTGTGCATTTATACTGCTTCAT ATTTTTCCAGGTTAATGGTCAAATTAGTCCATGTTGTAAGCGAGTTTGATTTAAGTTCTTCAGCGAAACTGGCTGTTTTT TACTGTCACTGAACGACACTTTTTCTGCCGAACGACTAAAATCAAACTCACTTACAAAATCAAGGACTAATTTGACCCTA TTTTTCCTGGTGAAATTCATAGCTAATGCTAACTTTTATTTTGCTGGCTGGTGTTTTTTATTATTTTAGGAAATTATAAA TGAAGAAGATGCAAAGCTGAAAAGATTGAAAATGGAGATGGGTGTTGGGCCATTTAAAGCGGTGGTGACAGCTTTGACAG AGATGAATGAGTACAATCCCAGTGGGAGATATGTAGTCTCAGAGCTATGGAACCGCAGTGAGGAAAGGAGAGCAACTCTG GAAGAAGGAGTTGAACTTCTGTTTGAACATTGGAAAGTAAAAAAGCAGAAAATACATCAAACTGGGACTGCTGATGGTGA AAATGCTGATAATGACAATGAAGTGTCACCCGCCCATGATGACAATGCGGCATCACCCTTTGTAGGAAAGGGTGTGTAAT TCACATTGCTTTGTCCCTGACATCAAAGCAAGTTGTGAATGGTGGGAAGGTTGATAGGTAATGAAATTAAGGTAGTGCTT TTGTTTTGAACATTTTGAGCTAGTAGGAAAAAGATTACAAGGGCTAATTCATTATATATAGATGTAGAAATGTGGCTAAC TTCTTGTTAGCTTGCTATCCTTGTTTGTTACTTAACTGGTGTGGGTGAACACATGGATTTTTGAACTTTGAATGACTATA TTATGTGCCTTTTTGTTTCTACTTTATTTCATTTCCTTGTTAGCTAGCTTTTTGTTAACCCTATCAGGCAGGGTCGAACT CTTAGTAATCTGATTAGCAATATCTGAGATAATGATGAGGATATGCAGTTATGCACCTGGACATTGGTATGGCTATTAAA AACCAAATCATATCTGTCCTTCCACAGTTGTCAGACAGTGATTCCAA
CDS sequence (LotjaGi6g1v0061800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAAACCCTAGGAGTAATGGTGGTGCAAGCAAGCAAAGCAAGGCATTTTCAAGCCTTCAGAAGGAAATCGAACAACA GAAGCATAAAGTGAATGATGTGCATCAAAAGAATAATGAGACAGCTATGTTCTTGAGCAAACTCAAAGACTCTTTGAAAA CGGTCATGGAAATGGCCAACAAAGAAGATACACAGCGTGAGGAATGTGACAAAGAACTACGACATATGAAGTTCTTGATC TCTAAAATGAGTCATGACATGGAATGTGTCAAGAAAGAACATGAGCAGATCACCAAGGAGCTGGAAGAGAGCAAATCTCT GAATGAACTGCAGCTGAAAAAGTTTACTGAAGAGACTCGTAAGAATTTAAAGCAAATTAGCTCTCTGAAGATGGCTGTTC AGAAGCAAACTGGTCATACAAATGTATCTACATTCTCTGAAGATCTTAAGGGCCAAACTGACCAACTCAATGCCAAAATA GTTGAACTTGAAAAACAATTGGAAAGCAAACAAGAGATGGAACTGGAGAATCAGCAACTTCAAGAGAAATTAGATGTCAT GGAGCACATGGAAGGTGAATTTCTGAAGATGGTGGCTGATTTACACATAAATGTAGCGGAAAAGGAACGGGCACTTCAAG CCTTAGAAGAATATAGCCAAGCACTGACAGTTAAAGAGCGTGAGAGCAATGATGAGCTTCAGAAAACTCGAAAAAGAATG ATTGAGGGCATTGCAGGAAGACCTAGTCGTGGTGCCAACATTGTTGTGAAGAGAATGGGGCAAGTGGACTCAAGGCCATT CTACAAAGCTTTGTATGCAAAGAGAAAATATAGCAAGGAGGAAGTAGCTGAGAGAGCTGCAGAAATGTGTTCTGTGTGGG AAAATAATCTGAAGGACCCCCATTGGTATCCTTTCAAAATAATCACATTTCGTAATGGACCAAAGGAAATTATAAATGAA GAAGATGCAAAGCTGAAAAGATTGAAAATGGAGATGGGTGTTGGGCCATTTAAAGCGGTGGTGACAGCTTTGACAGAGAT GAATGAGTACAATCCCAGTGGGAGATATGTAGTCTCAGAGCTATGGAACCGCAGTGAGGAAAGGAGAGCAACTCTGGAAG AAGGAGTTGAACTTCTGTTTGAACATTGGAAAGTAAAAAAGCAGAAAATACATCAAACTGGGACTGCTGATGGTGAAAAT GCTGATAATGACAATGAAGTGTCACCCGCCCATGATGACAATGCGGCATCACCCTTTGTAGGAAAGGGTGTGTAA
Protein sequence (LotjaGi6g1v0061800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNPRSNGGASKQSKAFSSLQKEIEQQKHKVNDVHQKNNETAMFLSKLKDSLKTVMEMANKEDTQREECDKELRHMKFLI SKMSHDMECVKKEHEQITKELEESKSLNELQLKKFTEETRKNLKQISSLKMAVQKQTGHTNVSTFSEDLKGQTDQLNAKI VELEKQLESKQEMELENQQLQEKLDVMEHMEGEFLKMVADLHINVAEKERALQALEEYSQALTVKERESNDELQKTRKRM IEGIAGRPSRGANIVVKRMGQVDSRPFYKALYAKRKYSKEEVAERAAEMCSVWENNLKDPHWYPFKIITFRNGPKEIINE EDAKLKRLKMEMGVGPFKAVVTALTEMNEYNPSGRYVVSELWNRSEERRATLEEGVELLFEHWKVKKQKIHQTGTADGEN ADNDNEVSPAHDDNAASPFVGKGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 39 | 39 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 6 | 388 | 383 | 1.4E-109 | – | |
| PANTHER | 6 | 388 | 383 | 1.4E-109 | – | |
| Coils | 17 | 37 | 21 | - | – | |
| MobiDBLite | 22 | 36 | 15 | - | – | |
| Coils | 87 | 107 | 21 | - | – | |
| Coils | 146 | 193 | 48 | - | – | |
| Coils | 198 | 228 | 31 | - | – | |
| Pfam | 257 | 389 | 133 | 7.3E-47 | ||
| MobiDBLite | 390 | 424 | 35 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0061800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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