Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0068100 |
| Transcript ID | LotjaGi6g1v0068100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | maternal effect embryo arrest 60; TAIR: AT5G05950.1 maternal effect embryo arrest 60; Swiss-Prot: sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7; TrEMBL-Plants: tr|A0A151R4M8|A0A151R4M8_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0068100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13000913..13002769) extracted from Lotus japonicus Gifu genome v1.2.
CTTCGATATCTGTTTCCAAATACATTTGAAGGTGTTTTAAGTTTTAACCCAAGTACTTAATTTGGAGCCTGTTTGCATGC GGACAACCCTTATTGGATGCCATTTTTCTATTGTTAAATGCTGGTTGAATCAGATACAGTGGAGGGAGGGAGAAGAGAAT TCCAGATGGAATTGCACCCAAAATCTCAACTTTTTTCACTGTTAATTTCTAATTTGAACAAAACTTAATTCAGATGAACT AACAAACAGTAACACATCAAAATTCTTCAAACCGTGTACAACATGACCGATTTCTTCTCTATTCTTTCCACAAATTAGTA CATGTAGAAGGGTTGTGAGAGAATCATGCTGCTAACACATACTTGGGTTGCGGGGATGCAGGGCCGGCGCCGTTGAGAAG GAGGCGGCGGCGGCGGAGAGGGGGGCAGCGCCGACGGTGGAGAGAGGGGCAGCAGCGGTTGGTACGAAGAAGAAGGAAAT AACGTGAAATAAAGAAGGGAAACCCTAGAATAAAAAGTTGGAATTTTAGATTTTTGCAGGGCTATTTTTGTCCGAAATTT ATTTCCCCTCCTAATTCCCCCACTTTTGGAGGGATCAAAAAGTTGAGGTTGGAGGGATTTTGCTCCCCTCCATTTCCCTC CCCTCCTAAAATTTGAACCAAACAAAATCAGATTTTAAAAATTCCTCCCCTCCCCTTCCCTTCCCTCCCCTCCGTTCTCC TCCAACCAAACAATTCCTTAGCAGCTAACTTTACTAAAATTGAATAAAAGAGTGAAGATCTATCTCTATCTGGTATCTAT CTGCATTGGCGAAAATGGCAATTTCTTCTTCCATCACGAGCGTGCACATCACGGCGCTAGACGCGATCGTGAACGTGAAC TCCCTCTTCACCCTCGCCGTCTTCATCGGCCTAACCTGGAACCCTCACGACCCGGAGAACAACCTCAACTCCGACCCCGC CTGCGCCCCCACCGCCGCCATCGCCGAGAATCTCGTCGCCTTCCATGTCTACTCCTTCAGCTCCTTCCTCTTCTCCAGCC TCATCGCACTCGCACTCAAGCAAGCCATCCGCCTCACCCGCACCTCCGCCTACACCCCCGCCGTCGCACATGTCAACCGC TCCTGCCTCCGCCTCGTCATGGTCGTCTCCGGCGCCGGATCTGTCTCCGGTTGCCTCTTCCTCATGCTCGCTCTTGTCAA TGTTGTTCAGATCAAGCTTGGTACTCTCGCCTGCGGCAGCTCCCACGCTTTCGCCGCCATCGTTCCGCTCTTCATCTTCG TTCCGATTGCGCTTCTTATTTATGTTTCTGTAGTGTTTTACGCTTTTACCCGCTAGGGTTTTCTTTTGTGAGTGTGTGTA AAACTGTGATTGCACTGTTTTGATGATGTATGTGAATGACAAACTAATGTATCTTCAATCCAATTACTATGAATTATTAC TGTGTTGTTAGAATTGGAGATTGTCTAATTGAGAGAAACTTGGGATGGATTGGATTGAAACTTAACCAACATTCCAACAA TTTGCTGTCTATCGGTTTGGTTTTCAGTTTGAAAGTGCTTCTACCCCAATTGGGGTCCATAATCTATTTTACGTTTGGGG CTTGAGAATGTGTGATTCAGTGTCCCAAACGGACCACCAAACTGAAAACCAACATTTTGGGGTTTTTCATGTGAAAGAAC AAATGTTTGGAATGTTGGTTTTAGTACTTAGGGGAGACAATGCAGTTGTTTTCACTTATTACATGTACCTAGCTCACAAG CTTGGCTTGCTTTGGTTTGACTTATTCAAACTAAAAAGGAAGGAATATGAAGAATGAATGAATTGTATGTTATTCACAGT TGAAATGAAAAGATACG
CDS sequence (LotjaGi6g1v0068100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATTTCTTCTTCCATCACGAGCGTGCACATCACGGCGCTAGACGCGATCGTGAACGTGAACTCCCTCTTCACCCT CGCCGTCTTCATCGGCCTAACCTGGAACCCTCACGACCCGGAGAACAACCTCAACTCCGACCCCGCCTGCGCCCCCACCG CCGCCATCGCCGAGAATCTCGTCGCCTTCCATGTCTACTCCTTCAGCTCCTTCCTCTTCTCCAGCCTCATCGCACTCGCA CTCAAGCAAGCCATCCGCCTCACCCGCACCTCCGCCTACACCCCCGCCGTCGCACATGTCAACCGCTCCTGCCTCCGCCT CGTCATGGTCGTCTCCGGCGCCGGATCTGTCTCCGGTTGCCTCTTCCTCATGCTCGCTCTTGTCAATGTTGTTCAGATCA AGCTTGGTACTCTCGCCTGCGGCAGCTCCCACGCTTTCGCCGCCATCGTTCCGCTCTTCATCTTCGTTCCGATTGCGCTT CTTATTTATGTTTCTGTAGTGTTTTACGCTTTTACCCGCTAG
Protein sequence (LotjaGi6g1v0068100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAISSSITSVHITALDAIVNVNSLFTLAVFIGLTWNPHDPENNLNSDPACAPTAAIAENLVAFHVYSFSSFLFSSLIALA LKQAIRLTRTSAYTPAVAHVNRSCLRLVMVVSGAGSVSGCLFLMLALVNVVQIKLGTLACGSSHAFAAIVPLFIFVPIAL LIYVSVVFYAFTR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 173 | 173 | 1.8E-79 | – | |
| PANTHER | 1 | 173 | 173 | 1.8E-79 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 35 | 24 | - | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 36 | 60 | 25 | - | – | |
| TMHMM | 60 | 82 | 23 | - | – | |
| Phobius | 61 | 81 | 21 | - | – | |
| Phobius | 82 | 106 | 25 | - | – | |
| TMHMM | 103 | 125 | 23 | - | – | |
| Phobius | 107 | 133 | 27 | - | – | |
| Phobius | 134 | 144 | 11 | - | – | |
| TMHMM | 145 | 167 | 23 | - | – | |
| Phobius | 145 | 171 | 27 | - | – | |
| Phobius | 172 | 173 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0068100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…