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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0069600 |
| Transcript ID | LotjaGi6g1v0069600.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LIM domain-containing family protein; TAIR: AT3G55770.1 GATA type zinc finger transcription factor family protein; Swiss-Prot: sp|Q9M047|WLI2B_ARATH LIM domain-containing protein WLIM2b; TrEMBL-Plants: tr|I3T8A1|I3T8A1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0069600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13310108..13313051) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTTTTCTTGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACAGTGTATCCTGTTGATCAGCTTTCTGCTGATGG TACTTCTTACCATAAAGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTGAAGGTACCTATTCTTGTTTTGTTTGCTG CATTGTTTATTTTCATGTCATGTTTTCCTTAGATCCTGCCTTTACTTGATGCAGCCTTCCATTCTTCTGAAATTCCCATA ATTTTACTTGATCTAAGTTGTTGACTAGAAAAAATCTCATTACTAGTATGCTAGGATCAGTTTCTCTTTTTTCAGAAGTT TATTTCCAAACTTAATTATGGACATGTATGTATTTTGATGGCATAGATAAGTTCTTATAGCAATGTAGATCACTGAACAC CTTTTAGTTAACTTTTGTGTGTCTAGTTTAAAGTTGAAACTTTTACTTGGACTATCGATTATTGATGGTCTTTGTGTTTC AGCTGAGCAACTATTCCTCAATGGAAGGTGTTCTTTACTGCAAGCCTCATTATGAGCAGCTTTTCAAGGAGACTGGCACA TTCAAGAAGAACTTCCAGTCGCGTATGTCTTCTTCTTTTTCTTCTTCAAAGATTAAGCTAATTTTGTGATTTTTGAATCA GATACCTCTTTAACTGGCCATTATTTCATTTTCAACAGCTGCAAAGCTAGCTGACAAGAATACTCCTGAGCTGGTAAATA TGTTAAATTTTCCATTTTTCAAACTTCATTTTGATATGGCCTTTTCATCATTAGTTCTATTCTGTGGCATTTTGGTATTG TTGAATTAACTATTGCATCTTCCTTTTATTCCAGACAAGGTCCCCAAGTAAAGCTGCGGGCATGTTTTCTGGGACACAAG AAAAGTGCGCTACATGTGGCAAGACTGCTTATCCATTGGAAAAGGTAAGCTTAACATATCTCGAAAACAAATTAGTTTAT GATATTTGTTATAGTCTCGAATTTCTTTATTACAAATTGGGAATATGGGTGTTCAAGCCATAACAACAAGGATCTCTATT AACATTGCGGTCTAGATCTCGTAGATTACAGGATTATCCTACTTTTCTAGCTCTATGATATGTGGCTAACCAAAAATTGA GAGTGCATAAGTGTAGCATAAAAAAGGTTAGTGTGAAGTGTCACTTCGCTTCCTTTTCTGGAAATATTCACTAGTTTTGG GCTAAATTGCCAGCGTGAAAATGCTGGATTAGTTTGACCTTTTGCCTCATGGTTGGTACATCATGTGCTAACTGCTAAGC TATCAAAATCATAGGAGTTTGAACTTCATTTTCAATATTCAGTCCAATACTTTGATATGGCTTCCTTATTCTATTAGGAG ACATATGTAGATAACAAAATTATGTGTTCATTTTTCTTTCATAATCCTCACAACAAGCAATTTTCCTGCCCCACACCTTG GGTCATTCACCAGCATTACCGTTAATTAAGAAAGTAGCTGCTATCATTCAATAAACCAAGAGCTTTTTTTTAGCAACAAA ACCCTAGCTATTGTTCGTGCTTCTCACCTGAGGATCACTCACTGTCTTGTCCTGACATGTTCCTTCGCGTTTAGAAGCTC ACTCCTTGGCTCAGGGCTCCCTCCAGCATTATCCGCCCCTTCAGTATGCTTTTTAAGTGCTTCCCTCGGGGCTATCTAAA ACAACAGCAGCTCTAACTTGCACGTGCTCCACACCGTGAAGCCTATGTTGATAAAGAGGCTTCCTTTCCTATGCAAACTC GGGGCACTTTCTCTCTTCCGCTCCCACAGAAAATTGCAATAAAAATTCCACTAAATGAAATCCTTGCTTCTAGTAACATA TACCTGCTGACCTTGTTTTGATGGGTTGGTTGAAACTGGAGATGATGTATGCCTGGCAGTTAGTAATTCCATTCACGGGA TCCAACGTACTTGATGATTCGGCAAGCAATGTGGGCAACTAGTGTTTATGGTATTACTATCAGCTAAGCCTAATTTTTTC CCACTGGGAAGGAGGTGTGGACTTTATCTCCTACCCAGTTCGATCTGAGAAAACAGTGTTTGATCCACTCTTCAGTCTCT ACGAATGGACGGGCTTACCTGAAATTGTGTGTAACCAAACTGGACTATATCTAAATGAGAGGATATCACTGTTTATTTGT CAATGATCGCACGAAACGAGGCTATGTTTCGATACCTTGTTCGTATCAGTCCAAACAAAGTTGGCACCCATTTTTGAGAC AAAAAGTGAACAAAACTCTTCTTATGGATTGGGATAAAAGTGCATTTACGTTGCATCAACTGGTATTCTAACACACTAAG TCTAATTACCACAAATCTGCAGTTCTTCACAAATAACTTAAATTGGAATGTTTAGTGTGTAATTGAGTGCAACCTTATAG ACTTTCAACCCTACTCATAAAAAGAGTGTTATTCACTTTTTGTTTTGAAGTACATGTAACTGTCTGTTTGCACTCATGTT TGAACACACCCTTAATTTTTTTTGTTACTATATATAAATATCTCTCTTATTTTGAGTGTAGGTAACAGTGGAAAGTCAGG CCTATCACAAATCATGTTTCAAGTGTTCACACGGTGGTTGTCCCATAACTCCATCGAATTATGCAGCCCTTGAGGGCATT TTGTATTGCAAGCATCATTTCTCTCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAGTCTGCATCAATCAA AAGGGCAGCAGCCTCAGTTCCAGAATCTTGATTGTTGGTGTCTTGTATTGCTTTCAATTTTTTTAAAGAAGATATTTGGT CTATCAATCAAGTGTTTGTATGTGTGGCCTTTTTTTTCAATTGTTCTATAGTGACTTGATCCTTTTCTGATATTTCCTTC TATGTCTGGCGTGGATTTCTTGTGTGATTTATTTATCCAATGCACATTCAGTAATGACCAATGA
CDS sequence (LotjaGi6g1v0069600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTTTTCTTGGTACCCAGCAAAAGTGCAAGGCTTGTGAGAAAACAGTGTATCCTGTTGATCAGCTTTCTGCTGATGG TACTTCTTACCATAAAGCTTGCTTCAGGTGCTCTCACTGCAAAGGAACATTGAAGCTGAGCAACTATTCCTCAATGGAAG GTGTTCTTTACTGCAAGCCTCATTATGAGCAGCTTTTCAAGGAGACTGGCACATTCAAGAAGAACTTCCAGTCGCCTGCA AAGCTAGCTGACAAGAATACTCCTGAGCTGACAAGGTCCCCAAGTAAAGCTGCGGGCATGTTTTCTGGGACACAAGAAAA GTGCGCTACATGTGGCAAGACTGCTTATCCATTGGAAAAGGTAACAGTGGAAAGTCAGGCCTATCACAAATCATGTTTCA AGTGTTCACACGGTGGTTGTCCCATAACTCCATCGAATTATGCAGCCCTTGAGGGCATTTTGTATTGCAAGCATCATTTC TCTCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTATTAAGTCTGCATCAATCAAAAGGGCAGCAGCCTCAGTTCC AGAATCTTGA
Protein sequence (LotjaGi6g1v0069600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFLGTQQKCKACEKTVYPVDQLSADGTSYHKACFRCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGTFKKNFQSPA KLADKNTPELTRSPSKAAGMFSGTQEKCATCGKTAYPLEKVTVESQAYHKSCFKCSHGGCPITPSNYAALEGILYCKHHF SQLFKEKGSYNHLIKSASIKRAAASVPES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 185 | 184 | 3.6E-112 | – | |
| PANTHER | 2 | 185 | 184 | 3.6E-112 | – | |
| SUPERFAMILY | 3 | 35 | 33 | 1.58E-9 | – | |
| Gene3D | 5 | 74 | 70 | 9.0E-21 | – | |
| CDD | 6 | 68 | 63 | 2.25925E-41 | – | |
| ProSiteProfiles | 8 | 68 | 61 | 13.87 | ||
| SMART | 9 | 61 | 53 | 2.7E-14 | ||
| ProSitePatterns | 10 | 44 | 35 | - | ||
| Pfam | 10 | 65 | 56 | 7.4E-13 | ||
| SUPERFAMILY | 36 | 76 | 41 | 3.38E-15 | – | |
| SUPERFAMILY | 100 | 133 | 34 | 6.02E-9 | – | |
| Gene3D | 102 | 172 | 71 | 5.4E-19 | – | |
| ProSiteProfiles | 106 | 166 | 61 | 12.256 | ||
| SMART | 107 | 159 | 53 | 1.9E-11 | ||
| CDD | 108 | 168 | 61 | 4.81325E-36 | – | |
| Pfam | 108 | 163 | 56 | 1.6E-10 | ||
| SUPERFAMILY | 134 | 173 | 40 | 2.96E-14 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0069600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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