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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0072500 |
Transcript ID | LotjaGi6g1v0072500.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein yippee-like; TAIR: AT2G40110.1 Yippee family putative zinc-binding protein; Swiss-Prot: sp|P59234|YIPL_SOLTU Protein yippee-like; TrEMBL-Plants: tr|I3SXJ4|I3SXJ4_LOTJA Protein yippee-like; Found in the gene: LotjaGi6g1v0072500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:13797331..13800540) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCTCTTTTTCTCTGTCCACGTTTCTTGCAACTTGCAACTACTGCATTGTACCAACAGACACAGAGGTAAATCATCTT CAACTGTTCTCACTTTCTTCTTCTTTCTTCTTCATCTTTCTTCTTTATCTCAATTGTTGTTGATCTTCTGTTACTTGCAG AGTCATGGGTAGGTTGTTTGTGGTCAATCTGGAAGGGAGGATCTACAGCTGCAAACACTGCCGCACCCATCTTGCGCTAT ATGAAGATATCATCTCCAAGGTTCCACTTTTCTTTAGCTAATAATTTATCTGGGTCTGTGTTACTTTTGCTAGATTTGCA ACCCCCATTGTTGTTTGTTCATCTGTAATGGATTATTTCTGCTATGTAATGTTAGTAGCTACTGTAATCACCGGGGTCTC AATTCTTTTGATGCAATCATGGTGCTGTCTGCAATTACTTGAATCTAATTTAATGCTTCACTTTGCTAGAGTCGGTGTGT TAAGTGGAGTTGTGGATTTTGTGCTGCTTTTTTTCAATTGCTTGGTGGTTGCTTAATTTGCTCAGCTTAGAATGTCTATT TTCCTTTAGATGCTTTGATATGCTAATTGCTTCTTATGTCATGTTTTTTTGTGGTTTCAAACGTTTGATTTGGCTACTTG TACCCCAGAAGTCATGGGGATTTGGTTTCGCATAAGAGTGCTTGTCTTTTTTTAATTTTCGGTACGAATTACTTAGAGAG GTGAGGTTTTCCTTTCTTATCTACTTACTGAACTATTATACTGTACTTAGTAGTTTTCTTAAATTTGTTTTCTGAAAGTA GTAGAGAAGAAAGTAGCTAGATAACTTTTGGAATCTCTTCACACAAAGAGAAGTTGATGTCATCTATATAATTTTCCTTC TGCTGAGACATGGTTGGTTTCAACATTTTTCCCAGAGAATTATGGATTACAATGCTATTCTGGATCTCATTTCTTCATGA TTTTGTGAATATTACATAAGATCTGCATTCTGCAAATAAAGTTGTAGAGATTTAGGCCTCCTTTGCCCCTTTAAAATTAA ACTAGTGTTCTACAAGTAACATTGTTGTGATTTTGAGTTAGGTGTGTATTATCTTTCTTGGAGAAAGATCGTATTGAGTT TGAGTTACAACTTACATGGCACCATCAGCTTCAATTTAAATTGCTAATCGTTAGTTGTTACCTCTAGTGCACTTTGTTAT CATTAGACACACTTTGGTTGGATAGATGCATCTTTGAATTCCATTATTAACTATGAATTATGTCAGATAGTCTTTTTCAA TCAATTGATACCTGCAGCTTGTCAAGGCTACCTAATAGAGAAACACTTTGAAGACATTATCTTCCAAAGGAAATATTGCC AGTGTTATCCTTTTACAAAATTAGTATCTTCATTTTTTTTTCTTGATTTTTTTGTTCTTTTTTGTTGTTGGCACCCCAAT TCCTTATGGGAGCTTGTCATAAACACAAACAATCTGACTATCATTCTTTTGGTATGTTGATTTGTTTAGACTTTCCACTC CAGAAATGGGAAAGCTTATCTCTTCAATAAGGTGTAAGTAATCTTTACTTTGGGAACCTTATCATTGTTTGGTTACTAAG ACACTAAAGTAAACATTCCACTTGTTGTATCAAGTCCATCAGCAATAAAGCTTGGTCATGTCTTACTTTTCTACCTATGG TCTTAAAAAGAGGGAATCATAGAAGAAGATTATTGAGATTTTATTTGTCCTAGAAGTTTTTTGAGGATGGATACATCATA TTCCTTTTTTTGTGAATGTCTACTGGTAAATCCTCTTATGCTTGCATTTAGGACATGGAAATCAAATATAAAATTCTATA ATCTTAGGTGAATCACAACTGCATAACATTATCAATCTATAATCGCTAGAACTCTTAACCAGTCCTGAGGCAACGTGTAA CGAAGTGTTCACAAATTAGTAAAGTTTGCAATTCATGGTCTCTTGCCTTGTGGACCTCTAATAGCTGCAAAATTATATTT TTGCAGTTGTCTCTGTTTACAGATATAGTTGAAACCTTTTATTCTTTGACAGCGTGAATATTTCTCTTGGTGAAAAAGAG GATAGAATGATGATGACTGGGTTACATACTGTGGCTGACATTTTCTGTGTGGGTTGCGGATCGATGGTCGGTTGGAAATA TGTAAGATCATGAGGCAGTGCTTCAAATGTCATGGTTTTACCTTTAAATGTAACTTTTACTTACTCAAATGGTTCTTTTT CAGGAGACTGCCCATGATAAAGGCCAGAAGTACAAGGAAGGAAAATCTGTGCTTGAACGGTCAGTAGAAATGTCGTTTGA AAAAAATGTTAATATAATTTAAAGTGAAATCATCTTGAGCCATAAGTATGTGGTGGTTTAGATGAGTTCTATTTTGAACA GGTACAAAATGTCAGGTCCTGACGGAAGCAATTATTGGATCAGCCATGAAGCAAATATTGGTGGAAGTGATGCAGATGAT GCTTAATCATTCTGCCATTCTCAATTGTACATTCCTTTACCCTGGGTTTTTCAATCAATGTTAATTTATCCCAACAATTT CACAGAATCAGCATGTTGCCATCTAATTGGTTATTTTCTTATATATAAAAGCTGATATTCAAACATCTAATTGGTCCTGT TTTTCAATTTGTAGAAACAAAGTTGGATGGAGAAAGCCTTTCAAGTGCTTTGTCTTTGTCTCTCAAGTAAATGGAATGTA ATGAAATAAAAAACTGCTGAAAACTATGTATTAACCAATACTTGGTTGGTTGATTCTAAGTTAATTTCTTCTTGAAATGA TTAATCAGTTATGATACCGAAAAAGATCCTACTTGAATGTGAAACACTGACAACTGTTGATTGAAATGCAAAGATTGGTA TTCTCATCCTGATGTAGGACTAAGTGTGTGTTTGAATACCAGCTAAGTGCAATGTGAATGAACTTTCATCTCAATTCAAA AGAAGAGTTTTATTCACTTTTTGCCTCTAAAGTGATTGCTAACATTCGTTTGCACTTCTGTCAACTAATATCCAAACATA ACCTAATTGGGTTGGATACAATGTAACTAGGATACAATGTAACTAGCTGGCCACTAGCAAGTATCTTTCCCATTCAACAA TTTGATAGCTATTGTTTTCTGTATTATACTAGCTATTACTGGCAGCATTAGTATTTTCCATTTCCCCCCTACATGTATGC TTGATATAAG
CDS sequence (LotjaGi6g1v0072500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGGTTGTTTGTGGTCAATCTGGAAGGGAGGATCTACAGCTGCAAACACTGCCGCACCCATCTTGCGCTATATGA AGATATCATCTCCAAGACTTTCCACTCCAGAAATGGGAAAGCTTATCTCTTCAATAAGGTCGTGAATATTTCTCTTGGTG AAAAAGAGGATAGAATGATGATGACTGGGTTACATACTGTGGCTGACATTTTCTGTGTGGGTTGCGGATCGATGGTCGGT TGGAAATATGAGACTGCCCATGATAAAGGCCAGAAGTACAAGGAAGGAAAATCTGTGCTTGAACGGTACAAAATGTCAGG TCCTGACGGAAGCAATTATTGGATCAGCCATGAAGCAAATATTGGTGGAAGTGATGCAGATGATGCTTAA
Protein sequence (LotjaGi6g1v0072500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRLFVVNLEGRIYSCKHCRTHLALYEDIISKTFHSRNGKAYLFNKVVNISLGEKEDRMMMTGLHTVADIFCVGCGSMVG WKYETAHDKGQKYKEGKSVLERYKMSGPDGSNYWISHEANIGGSDADDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 129 | 129 | 1.1E-78 | – | |
PANTHER | 1 | 129 | 129 | 1.1E-78 | ||
ProSiteProfiles | 12 | 109 | 98 | 50.474 | ||
Pfam | 14 | 105 | 92 | 2.9E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0072500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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