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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0077000 |
| Transcript ID | LotjaGi6g1v0077000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Differentiation-associated protein 1, putative isoform 2; TAIR: AT3G56010.1 transmembrane protein; Swiss-Prot: sp|C4L8X4|IF2_TOLAT Translation initiation factor IF-2; TrEMBL-Plants: tr|I3SL36|I3SL36_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0077000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14583154..14585985) extracted from Lotus japonicus Gifu genome v1.2.
AAAAGAAGCAATAGCATTTCAAAAAAAGAAGAAGCAATAGGTGTGGTCACGCGCTATTTGGCGTGTGTCAAAAGAAGCAA TTTCAGTCCAGAATAAACAATCTAGCGGTAAGAGTATGACCACTCTTTGTGGCTATCCATGGTTCGGCTTTGAAAAACAC AAGAACATGGCCATATCCTTAAACCCCATCATGAGCTTCAGCTCAAAGGTACGTTCTTCCTGTTCTCCTGCTTCTTCACC ATTGATTTTACTTAGTAGCTATTCTATTTCATTTCCTCTAGTTTCATTGAAAATTTTGGGCCATTCCTAAGTTTCTCAAA TCAGATGTATGCTTTTGGTTTTGAAGAATCCAAGGATTATATCCATACCCATTTGAGGGAATCATGGTAATGGGATTTTC TTATTTTAGTTTCAATAGTTGCCAGTGCTTAGTTCAACATTTTTGGAAAGAATCTCCAACCTATTTCTGGTGGGTATAGG AAGGAAGGATATATAGATAACAAGTTTATGGATTCAAGCTATGTTAGTAGTGTTCAACTATTCATGCGTGTGTCTTCACC CGATAGCTTAAGTTTTGGGATAATTGTTTCATGACATCGTATCGGAGTTTGAGTTTCTATGACCAAGTGGTCATCCTTGT TGCCCCTATTTTTCTAATAAGTAATTGAATTTCAGCACAAAGTATGAGGTTGTGCATTGTTCACGCTTCTTGCATGGGAG TATGTTAGAAGTATAATAAAAAACCATTCACGTGTCTTCAACCAAAAGCTTAAACTTTTGAAGTAGTTGGTTTATATGAG AACAATAAAATTGTGTTTAAGTATGGAGAGTGAAGATTGCTTGTACTATTAGAGGTTCGGGAAGAAAGATGAAATTTATA TTGGATTGTAAGAGATTTGAGGCACAATACACAGAACTTTAAATGGTAGGGATTATTTGCCTTAAGATTTTTATGGGGAT AACAAGTAGTATAAGTAGAAGTGTTAATAATCTGTTTTATTATGAGTAAAAAATATTTGATGGTGAACTTCTTAAGAAGG CTATTATTCCAGTTTATTCCTGTACCTCTATGTCACTCTGTAATTCAAAACAATTGATTATGGTGGAGCTGTGGTAAGTT CCGGTTTTGTCAAAATGCACCAAACTGATGTTTCAGTGGGACTTGTTCTAGAATGTAGTACGCTGAAGGCAGGTCTAGTA AGCAATATGTTTGTATAGAGGGGTTTGGAGGGAAAGAGAAGAGATAAAATCAAGGTATAATTGGGTTGAGGGTTTTGGAT GGAAAATTTTCATTTCAAATAAATACTCTATTAAGTTCATAATTTTTTAGGATGTAAGTGGTTTAGAAGTCTCACACTGA CTAGAGATATGACCAAATAGTCCTTACAACGTTCACCCTGAGCTAGCATTTGAGATAGAGTTACGCCTAATCCAAAATCT AAGATGGTATCAGAGCCTATTCTAGATGTGTTTACTGGAGAACACACATATGGATCACCCGCAGACGTTCATTTCTACAA TTTCGACGCTCCAAATATCTAGCCCTGACCGTAAATTTTAAGATGATATCAGAGTCTATCCTACATCCAGTTACTGGAGA CATGATCAGCCTTGGGTGTGAGGGGTGTGTCGAGAAGTCTCAAATTAACTCTAAATGTGGCCAAAATAGTCCTTGCTATA ACATTTAACAAGTAATTCAGTATGATTCAGCAGTTCAATAATTTTATCAGACTGATGTTTCTGATCACTTACGCAAGTCT TCTATTTTCCATTAGAGGCTGGAAACAAAGTATCAAGATGCAACACAGTATTCAGTTGGGGCTTCTTTCTCAAAAGCCAC TCAGATGACTCCCCTGTCGGTAATGTCTAGATCAAGAATGTTAGTCAAGGAAAAAAGGTTCGGTCATTGTTTCTCAGTTG CAGATAGTGATCAGCTTGCTGCAGCCACCGGTAGTAAGGATTCTGGTGATGATGCTGAAAATTCACCTTCTGTGAATCCT GCAGACGAAACTTTCCAATTGGAAGCTGAAACTAATGTCGAGTCAGGATCTCCGACATCAGATGATTCCAATGGATCAAT TGACCAAAAGGAAGGGTCAGAAACATCTTCTGCAACCAAAAGAACAGCAAGAGATAGGTTAAGGGCGGCTCGAGTCCTCA GCCGGTACAAGGACTCATCAAAAGAAACTAAACCAGAGATGGGAAAGAGTGTGCTGGATGCTTTTAAAGAAAGTGAGAAA GGGAAGAAAAGATCAAGACTTCCAGAAGCACCTAGTAATTTGTTGGATGACAGCAAGCGAGGGATGCCGAAGCAGGGCTT GACTTTCGATCTTCCTGGCGGTTCTGATCTGTTTTTCATTGTCTTTTCATTTGTTTTTATCAGCACAGTGATGTTTGCAA CAACTTACCTTGTGTGGAAAGTTGGTGCAATCCATTTTAATGAGTACTGAGATGAGTTATCTTGTTATAGCTGAGAATTC ATTCATAAATATAGATAGCTGAGTTATATATTTGGACAAGCTTCAACTTCTTTAAAGTTCATGAACTGATGTTAAAATCA GTTTTTATTATTATTATTTTTTTTTTTATTTTTTCCAATTTTATTTACTCAGGCTCTTTTTTCTTTATGTTTTAATTAGC TATTATTACCATTAGTTCATTAGGGGGGAGAGGTTTGATTCAGAGGAGATGTACAAGTGAATATACAATGCTAAACAATA CAACTAGGGTTTCTCTCGAGGCTTTGATGATTTTTATATTATTTTCAATTGATTCGGCTCTTCTCTTATAAAAAGATAAG AGAATTGTAGTTCATTACTGTTCAGTTTTCCC
CDS sequence (LotjaGi6g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACCACTCTTTGTGGCTATCCATGGTTCGGCTTTGAAAAACACAAGAACATGGCCATATCCTTAAACCCCATCATGAG CTTCAGCTCAAAGAGGCTGGAAACAAAGTATCAAGATGCAACACAGTATTCAGTTGGGGCTTCTTTCTCAAAAGCCACTC AGATGACTCCCCTGTCGGTAATGTCTAGATCAAGAATGTTAGTCAAGGAAAAAAGGTTCGGTCATTGTTTCTCAGTTGCA GATAGTGATCAGCTTGCTGCAGCCACCGGTAGTAAGGATTCTGGTGATGATGCTGAAAATTCACCTTCTGTGAATCCTGC AGACGAAACTTTCCAATTGGAAGCTGAAACTAATGTCGAGTCAGGATCTCCGACATCAGATGATTCCAATGGATCAATTG ACCAAAAGGAAGGGTCAGAAACATCTTCTGCAACCAAAAGAACAGCAAGAGATAGGTTAAGGGCGGCTCGAGTCCTCAGC CGGTACAAGGACTCATCAAAAGAAACTAAACCAGAGATGGGAAAGAGTGTGCTGGATGCTTTTAAAGAAAGTGAGAAAGG GAAGAAAAGATCAAGACTTCCAGAAGCACCTAGTAATTTGTTGGATGACAGCAAGCGAGGGATGCCGAAGCAGGGCTTGA CTTTCGATCTTCCTGGCGGTTCTGATCTGTTTTTCATTGTCTTTTCATTTGTTTTTATCAGCACAGTGATGTTTGCAACA ACTTACCTTGTGTGGAAAGTTGGTGCAATCCATTTTAATGAGTACTGA
Protein sequence (LotjaGi6g1v0077000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTLCGYPWFGFEKHKNMAISLNPIMSFSSKRLETKYQDATQYSVGASFSKATQMTPLSVMSRSRMLVKEKRFGHCFSVA DSDQLAAATGSKDSGDDAENSPSVNPADETFQLEAETNVESGSPTSDDSNGSIDQKEGSETSSATKRTARDRLRAARVLS RYKDSSKETKPEMGKSVLDAFKESEKGKKRSRLPEAPSNLLDDSKRGMPKQGLTFDLPGGSDLFFIVFSFVFISTVMFAT TYLVWKVGAIHFNEY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 222 | 222 | - | – | |
| PANTHER | 18 | 255 | 238 | 2.0E-83 | – | |
| MobiDBLite | 87 | 106 | 20 | - | – | |
| MobiDBLite | 116 | 208 | 93 | - | – | |
| MobiDBLite | 116 | 139 | 24 | - | – | |
| MobiDBLite | 140 | 196 | 57 | - | – | |
| Phobius | 223 | 245 | 23 | - | – | |
| TMHMM | 223 | 245 | 23 | - | – | |
| Phobius | 246 | 255 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0077000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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