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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0078400 |
| Transcript ID | LotjaGi6g1v0078400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitotic spindle checkpoint protein bubr1; TAIR: AT5G05510.1 Mad3/BUB1 homology region 1; Swiss-Prot: sp|O22806|BUBR1_ARATH Mitotic spindle checkpoint protein BUBR1; TrEMBL-Plants: tr|K7LRS1|K7LRS1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0078400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:14817589..14821321) extracted from Lotus japonicus Gifu genome v1.2.
AAAAATTAGTGTCAAAACTCAAAAGTAATAATCCTTAATTAAATGTAAAATAATTATGAAATCTCTTTCAAATATTTTTT ATTATGAAATCAGGCTAGTCCAATCACAAAACACGGCCCAGCCAATTTGGCCCATCATCTCCTTTACCAAAAGAGCGCGT GACCACCCTCCCAGACTCAAATTCAAACAATGTCCACCGTGTGACCGTGCTGCTCCGACGACCACCGCCATCGCCACCGT GCCCATTCAGAAATGGCGAACTTCGAAGAACTCTTATCCTCCTTGAACTCAGACATCAACTCCTACACCGGCAAAGACCC TCTTCTTCCTTGGCTCCGGTACGTTCCCCTCTCTCTCTATACAGTTCATGTCTCAATTTATACTCAGTAGTTCTCTATCG TTTTCAGAGGGATCCGAAAGATGAAGGACACTCTTCCTCCTCAAACCCTCAACGAAAAACTCCCCGATTTCCTCCAGAAA TGTGCTCGCATCTTCGAGCTCGATCGGCGTTACAGAAACGACATGCGTTATCTTCGCGTTTGGCTCCACTTGGTAACCGA ATTCAACCCCGTTTTTCAGAAATAGGGTTGTGGAAATTATGATTGAATTTTAATTTTTTGGTGTTATCATATTGGATTTA GGAATTTCTTGATGAATTTTTTTTTTCACTTTGTGATAATTGGTAGATGGATTTTGTGGATGATCCTGGAGCACTTTTGA AAACCATGGAGGTGAATCATATTGGGACGAAACGGTGTCAGTTCTACCAAGCATATGCTCTTTACCATGAGAAGAGCAAG AGGTATGATGAGGCAGAGAAAATGTACCATCTGGGAGTGAAGAAGTAAGTTCTTTTCTGTATTCAGGCATCTTGTTTTAA ATTTTGTGTTGAGCACATGATTGGTGATGTAATTTAGCTATGAATTTTGCACTAACAAAGATTAACATTGTTCCTTGATG GATGGATAAAGTCTCATTCGCACGCGTTAAAAAGTGGAAATGAAGTGGAGAGACGAGAGAGATAGAAAGTAAGAGTTGTG ACAGGTGATATGATTGAAAGAGAAGAGAGAGATAGATAGAAAGTAGAGTGGAAATGAAATGGATGTGTGAATGAATCATA GATCTTGATAATATGGTTGCCAAGTGCCAAAACAAACAAATCTTCTCTATCCTGGCCTTTATCTCCTAAAAATATGATGA AGATGTGAGAGTAACTATTATTAAACTTTCAGCTTAGAGACACTCAACTTTGCCTGGATCAGGCATCCCACTCTACTTAT TCTATTATTTAGTGAAATAGGGACATCATTTCAGAGAATTTTTCTTCTAATTTTGCACAAGGAATAACATTTTAGTTTCT TCTGTCCATAACTTCCAGAAGTCATGTTAATCTTGCCCCTACTGTTGAACAGTCTTGCAGAGCCTTTAGATGAATTGCAG AAATCATATGATCAATTTCTTCAACGCATGAAGCGGAAGAACAACAAGAGAGTCCAGGTAGTGCCTAGCTTTTCCTTTTG TTTTCATGTGTGTTGTTTAAGGCATCCCTTTCATGTTGTTAGAGATATTCAGTTAACTAATTTAGAAGCACATTCTACAG CACAAGGAAGTAAGGTCTAGCAGGAGGCCTCTGTCTACAAAGGGCATACCTCCTTTTGATAACAAGACTGGGGAATGCAG TGTTGGGGGTGCGCAAACAGGACGCCAAGTTGCGAGTTCTGTAATTGAAGATGTTGCTGATGATAGAAGAGTGAAGACTA GAAAGAGTGAGGGCAAGAGATTTCATGGTGATGATACAGTTGTTGTCAAGAAGTTTGTTGGCACTGCCATGGATGGAAAG TCTGAAGTAGAAGATGCATGCCATCATGGACTGGTGGATCCTACAATAAATATGAAGGAGGCCAGGAATGCTATTAACAG CATGTTCCGGGAGCCATTGGAGACTGTTCCATTAGCCAGGAAATCACATAAAAAACATGCGAAAGAAAGTCGGAGTACAA AGAATGACTTCAAAGTTTTTGTTGATGAAAACATGGATTATGGAATCAAACCATCCGGTTCTTTATCACTTCAGCAAAGG ACTGGAGCTAGCCAAGCTCACCAAGAACCTCTCCAGATATACATTGATGATGAAGGATGTTCTGAGAACAATGACGTAAA TATGAGTTTGTCTGATGGTTCTGCTTCATCAGCTTCAAAACTAAATGGCTTTGTTTTCCCACCACCTAAGGATCTTCTTT CTGAAAAATCTTCTGATATGGAGGCAGTTAGCTCCCGTAATCCAAGGTTATTTAGAGAGGATACAATCGTTGGCAGATTT GTTGGTTCCGCCATTTTGGATGAACCAAAGGTGGAAAATGTTTGCCACCACGGCTTAGTAGAGCCCACAATCAACATGAA GGAAGCTATGAATGACATAAATGGCATGTTTGTGAAACCAATGGATTTTGTTAGGAGAAAAAGATCAATGAAGCAGGAGA AAGGACCCGAGAGCCATAGTGGAAAGGAATTTGGTGGGTTTTCAATCCTTGCTGATGATGACCTAGAACATCGACAAGGT CCATCACCACCACCTCCACCTCCACCAAAGTTGCCAAGAATGTCAAAGGAATCTGATTTATTTGAGCCAACTCTCCACAC AAAGGAAGCCAAGGACGACATAAACAAGATGTTTAGTATGCCACTCGATTTTTAGGGACAAAGTGTGTGCTGAGTGCCGA TTCTGTGTTTGCAAACCCTTTATATAATTGATTCTAAAGACATAATGGTTCTAAAGCCAGAATCAATTGTGTGGAGAAGC TTTTGTGAGTAGCTTCTGAGTTTCAGAATTGATTATGATGAAAGAGAAGTTGATTGTAAGTTGTAACAACAATTGTGTTT TGTGTGAGATACTCTAATAAAGGTTACCGGTCTCCATTTTTAACTATTTTTACTTTACATACTTTCTGTGCTTAGCTGCT AATGGAACTCAAGCTAGGACAGTCAAAATCCCATGAAATGATATGAAAAACCCAAATTAAATTGCCAGCAGTTACATTAC AATTTAATGTGATACATAAAAATACCAAAAGAAAACTGTATCAGATTGAACACTATATTATAAGGCACAAATAATAGCAA CAATAATGAAATCACGAGAAACTGAATCTCAATGCTTGGTCAAGTGTTTGAAACATCATTAGTGAATCTATGAGCAATCC GAGGGATGGAACGCCAAGGGGCTAGCAGCATATATGACAGCTTCATAGTTGCTTCCATGCAATCTCTTGTTCTCATATCG AAGTCGAGCTCCATTGAGACCATAATTGACATTAGAGAGAAGGCTGCAACTTTCAAGAGGAGACCAAACAGGCTTGACAT AGCAAGAGTGGAGGGGATGATCAAGTATATAGTTCTGCATCTTGAACCCTTCAAGTGGTGCATAAAGGTAACCATTTTTG TCAGTCTGAAAGACCTTGTAGTAGCTAACATGACCTTTGTGGCTTTTGCATGTGACACTCACTTTGGCGAAAGGAACGGG TTTGGCTCCTATCAAAGACCATGTTCCAGAGTGCTCACAGCTCTGACAATAGACAGTGGTTTCCACGACCACATCTATTT TCTTCTCTGTTGTTTTCACAGCATCTTTAGTAGCTTGTGTACAAGGGAAAGCCACTAGGAGAAGGAGAAGAGAAACGAAG CTGAAGTGCGTGCAAGCCATATCCTTTAGTGTTTTAAGAACTAGGAAAAGTTA
CDS sequence (LotjaGi6g1v0078400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAACTTCGAAGAACTCTTATCCTCCTTGAACTCAGACATCAACTCCTACACCGGCAAAGACCCTCTTCTTCCTTG GCTCCGAGGGATCCGAAAGATGAAGGACACTCTTCCTCCTCAAACCCTCAACGAAAAACTCCCCGATTTCCTCCAGAAAT GTGCTCGCATCTTCGAGCTCGATCGGCGTTACAGAAACGACATGCGTTATCTTCGCGTTTGGCTCCACTTGATGGATTTT GTGGATGATCCTGGAGCACTTTTGAAAACCATGGAGGTGAATCATATTGGGACGAAACGGTGTCAGTTCTACCAAGCATA TGCTCTTTACCATGAGAAGAGCAAGAGGTATGATGAGGCAGAGAAAATGTACCATCTGGGAGTGAAGAATCTTGCAGAGC CTTTAGATGAATTGCAGAAATCATATGATCAATTTCTTCAACGCATGAAGCGGAAGAACAACAAGAGAGTCCAGCACAAG GAAGTAAGGTCTAGCAGGAGGCCTCTGTCTACAAAGGGCATACCTCCTTTTGATAACAAGACTGGGGAATGCAGTGTTGG GGGTGCGCAAACAGGACGCCAAGTTGCGAGTTCTGTAATTGAAGATGTTGCTGATGATAGAAGAGTGAAGACTAGAAAGA GTGAGGGCAAGAGATTTCATGGTGATGATACAGTTGTTGTCAAGAAGTTTGTTGGCACTGCCATGGATGGAAAGTCTGAA GTAGAAGATGCATGCCATCATGGACTGGTGGATCCTACAATAAATATGAAGGAGGCCAGGAATGCTATTAACAGCATGTT CCGGGAGCCATTGGAGACTGTTCCATTAGCCAGGAAATCACATAAAAAACATGCGAAAGAAAGTCGGAGTACAAAGAATG ACTTCAAAGTTTTTGTTGATGAAAACATGGATTATGGAATCAAACCATCCGGTTCTTTATCACTTCAGCAAAGGACTGGA GCTAGCCAAGCTCACCAAGAACCTCTCCAGATATACATTGATGATGAAGGATGTTCTGAGAACAATGACGTAAATATGAG TTTGTCTGATGGTTCTGCTTCATCAGCTTCAAAACTAAATGGCTTTGTTTTCCCACCACCTAAGGATCTTCTTTCTGAAA AATCTTCTGATATGGAGGCAGTTAGCTCCCGTAATCCAAGGTTATTTAGAGAGGATACAATCGTTGGCAGATTTGTTGGT TCCGCCATTTTGGATGAACCAAAGGTGGAAAATGTTTGCCACCACGGCTTAGTAGAGCCCACAATCAACATGAAGGAAGC TATGAATGACATAAATGGCATGTTTGTGAAACCAATGGATTTTGTTAGGAGAAAAAGATCAATGAAGCAGGAGAAAGGAC CCGAGAGCCATAGTGGAAAGGAATTTGGTGGGTTTTCAATCCTTGCTGATGATGACCTAGAACATCGACAAGGTCCATCA CCACCACCTCCACCTCCACCAAAGTTGCCAAGAATGTCAAAGGAATCTGATTTATTTGAGCCAACTCTCCACACAAAGGA AGCCAAGGACGACATAAACAAGATGTTTAGTATGCCACTCGATTTTTAG
Protein sequence (LotjaGi6g1v0078400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MANFEELLSSLNSDINSYTGKDPLLPWLRGIRKMKDTLPPQTLNEKLPDFLQKCARIFELDRRYRNDMRYLRVWLHLMDF VDDPGALLKTMEVNHIGTKRCQFYQAYALYHEKSKRYDEAEKMYHLGVKNLAEPLDELQKSYDQFLQRMKRKNNKRVQHK EVRSSRRPLSTKGIPPFDNKTGECSVGGAQTGRQVASSVIEDVADDRRVKTRKSEGKRFHGDDTVVVKKFVGTAMDGKSE VEDACHHGLVDPTINMKEARNAINSMFREPLETVPLARKSHKKHAKESRSTKNDFKVFVDENMDYGIKPSGSLSLQQRTG ASQAHQEPLQIYIDDEGCSENNDVNMSLSDGSASSASKLNGFVFPPPKDLLSEKSSDMEAVSSRNPRLFREDTIVGRFVG SAILDEPKVENVCHHGLVEPTINMKEAMNDINGMFVKPMDFVRRKRSMKQEKGPESHSGKEFGGFSILADDDLEHRQGPS PPPPPPPKLPRMSKESDLFEPTLHTKEAKDDINKMFSMPLDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 4 | 128 | 125 | 3.2E-44 | ||
| PANTHER | 5 | 522 | 518 | 1.2E-215 | ||
| PANTHER | 5 | 522 | 518 | 1.2E-215 | – | |
| Gene3D | 9 | 166 | 158 | 4.5E-44 | – | |
| Pfam | 10 | 128 | 119 | 9.8E-34 | ||
| ProSiteProfiles | 11 | 167 | 157 | 45.809 | ||
| Coils | 135 | 155 | 21 | - | – | |
| MobiDBLite | 153 | 181 | 29 | - | – | |
| MobiDBLite | 445 | 522 | 78 | - | – | |
| MobiDBLite | 493 | 516 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Mitotic spindle assembly checkpoint | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. |
Expression pattern of LotjaGi6g1v0078400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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