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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0084900 |
| Transcript ID | LotjaGi6g1v0084900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Apoptotic chromatin condensation inducer in the nucleus; TAIR: AT4G39680.1 SAP domain-containing protein; Swiss-Prot: sp|Q9JIX8|ACINU_MOUSE Apoptotic chromatin condensation inducer in the nucleus; TrEMBL-Plants: tr|A0A0B2RHC9|A0A0B2RHC9_GLYSO Apoptotic chromatin condensation inducer in the nucleus; Found in the gene: LotjaGi6g1v0084900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16850615..16856076) extracted from Lotus japonicus Gifu genome v1.2.
AACCATTCTCACTTGAAACTCTGGATCAAGCAGTCGCCACGTGTCAAAAGGGTAATATCGACATTGCAACCACGAACCAA ATCTTAATGTAACTACCACGCCTGTGCAGAAAATGAGACAAACCCAGACGGGAACATAAGGCTGAACCCTAAAAACAGAG CCGTTCCTTCCTTCCTCGCTCCCCACCCAACCCAGAATCAAGAACCCTATTTTTATTTTATTTCTTAATAATTGTTTTGG ATAAGAACGTTTTCTGATTCTGAATCTTTATTTGTTTGGACATTATTCTGTTTCGCTGTTTTCAGGAAAAGGAGATATTA AAATTCAGCGCTTTCGTTTCGGTTCGATGTCCTTCTCTGTTTCTTCTTCTCTGCTTCCTCTTCTCAAATTAGGGTTTTGA TTTCGAAGTCTCTCTCGATTCTCCGCGAATTATCATCATCGTGAGTAAATTTCTATCCTTTTTCTATCTGTTGGTAAATG ATTCTTCCGCCATTACTGATTATTGTGCGAATTTTCATGGTTTTCTTGAATTTTCCCACTTTTTAATTTGGGGTTTTGTT TGTAAATCTTGGCAAGGTTGCAATTTTGAGAAATAATTTGTATGCATTTCAGTTCAGTTTGATGTGGTTTTAGGACAAGC CTTGTTGTTTGTTTGCGCGGTGTTTGAATTGATGGGTTCTTTGTTTCTTTGTTGCTGTGTGGATTTTTAATTGATGTCTC CAGGTTAAGGAAGGTGATTTGTGGTTTTGATTTTGGATATAATGTTGACGTCAAGAGTTCTCGACAATCGGCCCATTCAT CAGTGGAAGGTTACGGAGCTGAGAGAGGAGCTGAAGAGAAGGAGGTTAACTACCAAAGGTTTGAAGGATGATTTAATCAG GCGTTTGGATGAAGCCCTTCAGGCTGAGGCGGATGAGGCTGAGGCTGAGGCTGAAAATGCTCGTGCTGAGGATGCTGAGG CTTCTGAGAAGGACGATGCTGAAAGGAAGGGTGCTGATCCTCCTGATGCTGAAAGGGAGGGAGCTGTGGCATCTGAGAAG GACGAGGCCAATGGGGTTGACGGGGATGTAGCTGGTGTGAAAGATTCCCAGACAGTAACTGTTGATGCTGAAGCAGCGGA TGTGAATGAAAAGGAAAGGGCTCAAACAATTGAAACTTCTGAAAAGGTGACTAGTGTTGAAGTTGAGACAATTGAAACAG AAAATGCAGAGAAGATTCCTCCTGAGGTTGTGGATTATGACAGCAATAAGAATGACAAGCAGGATGGTGTTACCATACCA ATTGACATCAATAATAGTGTGTCAACAATGGATCAAGAAATTGAATACTCGCGGTTGCCAGCTGGTGCAGATTCTGCAAA CGCGGGAGAGGATGTTATTGTCCATTCTTCTACCTTGGAGACCACTGTTACAGTCACTGAGACTGTATTAACAGAAGTAG TAGTCAGTGGTCAGGATTCTGACAGGGTATACAAGAATAATGAGGATTCTGGAATCAAGCTGGATAATGAGCAGTCAAAG GTGCAGCTGGATAGTGAGGACTCAAAGCCCCAACTGCAGTGTGACACAAAGGCCCTTTGCGAGGATCTCATGCCCGACTC TTCTATTCCGGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATT CTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATAATTGCTGATAATGTCAAATTAGAACAAGATTTTGTTAGG CCGGAGTTGGTGCAAGAACCATCATCCAGAAATGATGAACCTGTTTATGATGAATCAAATTCAATGGATGTTGGAGGGCT GCATGAGAAAAAGGCATCTGTTGAAGAAAATACCAATAATATTACAAGTCCAGACTTCAACAAGACCATTAACAGTGATG ATGCGGGGTATCCCGAAAAGTTGAACTTGGATAGAAGTTCTGGTGATGATTCCATGGAAGAGGATGTGCCTGAGACTAAG CAATTTGATTCTAAGTTTAATGTTGATGAACTTAGTCTTAGAGACAAAGGGGAGAATATTGAAGTATCTATTGTGAAGGA GGAAAATAATACTGTAGTTGTGGGAGATGGTCTATCTGCAGGGAAAAGTGATACAAATCTTGACATTGACATGAGTCCTG TTGCCTTGGCTGATAAACGGAAATATGCTGGTATGCATGATATTTTTATTTCTTATTTGTCCTCAAATCAACTTTTTGGT GGTTGTACTGTATTCTTAAGGACATGCAAGGAATTATATGTTCAGTATATGTTAGTTCCTGTCATGCTTTTTGTTATCAT TTGTTCTTACTGATAGCTTCTTTATATATTTGTTAATCGTCCTAATTGCCCTGGTTTATTTGGAACATTTGGTCACAGAA CAAGCATCTGTTGGGAACAATGAGCCTGCGAAAAGGCAACGCAGGTGGAGTACTGAAACACGTAAAGGAGCAGATCTGCA AAGCACTACTCCCAGACCTCCTACTACACCCAAGGATGAGCCAGTTGCGCCGAAACGCAACTTCCCCAGGTCTGATTCCT TTGCTGCTGCTGATGCTCCTAAAGAACGCATTGGTAAGTAGACATTATTCTGATTGTGGTAAATCTATGAAGAACTAATT CCTCTATTTCTGCTGTTGGTATGAATGGATATTGATTTTCTATTCATAGCTTGTAGCTTAAATAAATAAGCAAACTCCTG GGACTTTCAAATTTGGATTCCTAGATTTTGCATCAAAGAACATTCTGTGCATATCTTATTCTGTTTAAATCATTTTTGAA TTTTGAATATGGGTGATCTCATATTTGTTGATTTTCCATGTTCATATCATATGAATTTACTAAGTGAAGATAAGGCTTGG TTGGTGGTGTTGTATTCATTTACGCAGTTGTTTTTCTGTCTATGCTATACAATATGCATATTATGTGGACTTTAGTTTCT TGTCTTACTGGGATGCTTGTTGAACTCTAGTTTTAACTTGTTTAACCGTACCTGTTACGGTCCCAGGTGACAAAACCGAG TTACATCGCATGTAAACTCGGGTGAACTAGTTTCTTTTTGAGTTTATGAGTTCAGCTAGAAATGGAGAAAATCCTTTTTC TTTAAACAACCGCATTTCATGTCACTAATCACTATCTCTACATTATTACTTTTTTTCTTTACAAACTCTCGTTTCCTTTT TACTTGTTTCCTCTTTTAGGTATTTTGCCGGCTGGATTATTCCTACAATTGTCTACAAATTCCATGACTTTTTTGCTCTT ATACGAAGTTCAGTTCTTTTCCCGTATTAACTTGTTAACTTTTTGCTATGGACTGATACTTTTTCATTTTATTTATTATT TTAACTTGTCCTTGCAAATTTATCATCTTATGATTTTCGTTATTAAAGTATGTTATTAATTTCATCATTATTATAATTAT TTAAATACTAGTTTTACTCGAGTTTATTTCGTGCTTACAATCACTCCATGAGTTAACTTAAACTCAGTTTGACAACCTTG AACGGTATGTGTTTATGTCCACTCTCTATTTTTCAAGTCTAAATAGTGTTTTCTTTTATCTTTGGCAGTTCCACCATCAC AAAGGACCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGACCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGC AAGACTGGGAAAGTTAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTGTAAGATGATTCTTTTCTCC CTGGCCTCCTGCTACTGCAATTTCTAACTGTGATATAATCTTTTGTTATATCTTGTTGATGTAGTACTCGTCCATTGAAG AAGCCACTGAAACACGGAATGCCGTGTATAATTTGCAATGGCCTCCAAATGGTGGACGCCTCTTAATTGCTGAGTATGTT GATCCTGAAGATGTGAAAATGAAGTTAGAAGCTCCTCCTCCTCCTCCTCCTCAGGCCGCCTCTGTCAGTGTTCCAACAGT TGCTCCTGCACCATCTTCCTCACAGCCAGAGCCTTCCCCTCGTCAGCAAAGGGAGCAGCATCCAATTCCAGTTGCTCTTC CACCTCCACCACCATTGTCAAGGGCCCCGCCAGTAGCAAGGGAACGGCTGCCATCCCCACCTCCCCTACCTGAGAAAGTG GACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCAACTCCTCGGATCTACTATTTACCTTTGTCTGA AGAGCAAGTTGCCGCCAAACTTGCAGCACAGGGAAAAAGCACAAGGCAGTAGGAGACTACCCTTCTATTCATCCTTGGCA GCTTTTACTGATTTTCTTATTTTTGGCCATCATGCTAGTTAGTGTTATGGAAGCATTTTGAATACATCTTGGCAGGTCTG CTGATGCTCAGTAAGAAATTGTCATTTCCATCGCATGCATCTTGAGACTTAAATTACATTAGTGTTCGAACGTCGTTTAA TTAAGAGCTACTTGGATTCTTAGATTTTCTTCGCTATTCGAGCTAGTTAAAATGAACCTATCTTTGCCAAACATCTTGAA CTTTCATGGGGAAAAAATTGTTAGACTATCTTTTCTCTAGGACTTTCATTGCATTAATGCTCTCCAAAAATAGTGCATGG CTTTTTCTTGGTACGTGTTTCCTTTTGTTGAATGCCAATTTTCAGCAGTTGTTTGAGCATGCTATTTTTCCGTCATCAAG CCTGGTAATTAGTCATCAAGCCTGGTAATTAGTTCGACATGCAGGAGTTAGTGCGCCAAGATCCAAAACAAGTGTTATTC AAATTCCAGAATAAAAGCGATACAAAGTATGGTGGTCTGTCTTCTTCCTCAAGAATATGTCGGTAGGAAGTTTTGGAATG AGTCTAAATGTGAATATAGCTCTTAAAATGGGCCTAATTGGCTTACTATGGCTTGAATAAAAAAGGCTTGATTGCATTTT TGGTACCTCTAATATGCTTGATGTGTGATTCTGGTCTTCTCATATTTTTTAAGCAAATTTAACTGTATTTTTTATACTTG TTATTTAAGTATACTTTTATATTATGGGTCTCTCTAAAATGAAAAGTGGTGTAAAATTACGCTAGTTAGATTAATCGGCT ATACTAGGTTATTTTGTCCTTTTCAATGATAAAAATAAATTAAGTGAAAAAATAAAATACAATCATCTCCTTAACCATTC CCCCATTCCCAAATCTCCATTTCTCATCTTCCTAGCTCAAACATAGCAATTTCTATTAAATCAAGCTTCCAGAATCAATC ACGAATCAATCACTGATACTATTATGATAAACACCATAATCAATCAAGCTCCCACAATTTTAACACCAGAGAGAACATCC ATAAGACATGGAACATATGCTAAATGAACAAGCTCCACCTCAAATCATTGATACCCGAAATGATGCAAGAAAAACCTTTC ACCGACCAATCTACCACACCTG
CDS sequence (LotjaGi6g1v0084900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGACGTCAAGAGTTCTCGACAATCGGCCCATTCATCAGTGGAAGGTTACGGAGCTGAGAGAGGAGCTGAAGAGAAG GAGGTTAACTACCAAAGGTTTGAAGGATGATTTAATCAGGCGTTTGGATGAAGCCCTTCAGGCTGAGGCGGATGAGGCTG AGGCTGAGGCTGAAAATGCTCGTGCTGAGGATGCTGAGGCTTCTGAGAAGGACGATGCTGAAAGGAAGGGTGCTGATCCT CCTGATGCTGAAAGGGAGGGAGCTGTGGCATCTGAGAAGGACGAGGCCAATGGGGTTGACGGGGATGTAGCTGGTGTGAA AGATTCCCAGACAGTAACTGTTGATGCTGAAGCAGCGGATGTGAATGAAAAGGAAAGGGCTCAAACAATTGAAACTTCTG AAAAGGTGACTAGTGTTGAAGTTGAGACAATTGAAACAGAAAATGCAGAGAAGATTCCTCCTGAGGTTGTGGATTATGAC AGCAATAAGAATGACAAGCAGGATGGTGTTACCATACCAATTGACATCAATAATAGTGTGTCAACAATGGATCAAGAAAT TGAATACTCGCGGTTGCCAGCTGGTGCAGATTCTGCAAACGCGGGAGAGGATGTTATTGTCCATTCTTCTACCTTGGAGA CCACTGTTACAGTCACTGAGACTGTATTAACAGAAGTAGTAGTCAGTGGTCAGGATTCTGACAGGGTATACAAGAATAAT GAGGATTCTGGAATCAAGCTGGATAATGAGCAGTCAAAGGTGCAGCTGGATAGTGAGGACTCAAAGCCCCAACTGCAGTG TGACACAAAGGCCCTTTGCGAGGATCTCATGCCCGACTCTTCTATTCCGGAAAACCAGGTATCTGAGGTCAACCCTAGTT TAGGGTCTCAAGTAAAATCTGATTCTATTTCTACTGATTCTGTGTCAATTAATCAAAAGAATGAACTAAAGGATACTATA ATTGCTGATAATGTCAAATTAGAACAAGATTTTGTTAGGCCGGAGTTGGTGCAAGAACCATCATCCAGAAATGATGAACC TGTTTATGATGAATCAAATTCAATGGATGTTGGAGGGCTGCATGAGAAAAAGGCATCTGTTGAAGAAAATACCAATAATA TTACAAGTCCAGACTTCAACAAGACCATTAACAGTGATGATGCGGGGTATCCCGAAAAGTTGAACTTGGATAGAAGTTCT GGTGATGATTCCATGGAAGAGGATGTGCCTGAGACTAAGCAATTTGATTCTAAGTTTAATGTTGATGAACTTAGTCTTAG AGACAAAGGGGAGAATATTGAAGTATCTATTGTGAAGGAGGAAAATAATACTGTAGTTGTGGGAGATGGTCTATCTGCAG GGAAAAGTGATACAAATCTTGACATTGACATGAGTCCTGTTGCCTTGGCTGATAAACGGAAATATGCTGAACAAGCATCT GTTGGGAACAATGAGCCTGCGAAAAGGCAACGCAGGTGGAGTACTGAAACACGTAAAGGAGCAGATCTGCAAAGCACTAC TCCCAGACCTCCTACTACACCCAAGGATGAGCCAGTTGCGCCGAAACGCAACTTCCCCAGGTCTGATTCCTTTGCTGCTG CTGATGCTCCTAAAGAACGCATTGTTCCACCATCACAAAGGACCCCAACTAATTCCCTCAGGATTGATCGTTTCCTCCGA CCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAGACTGGGAAAGTTAGCAGTTTCTGGATGGACCAAATAAAGAC CCATTGCTATGTTACTTACTCGTCCATTGAAGAAGCCACTGAAACACGGAATGCCGTGTATAATTTGCAATGGCCTCCAA ATGGTGGACGCCTCTTAATTGCTGAGTATGTTGATCCTGAAGATGTGAAAATGAAGTTAGAAGCTCCTCCTCCTCCTCCT CCTCAGGCCGCCTCTGTCAGTGTTCCAACAGTTGCTCCTGCACCATCTTCCTCACAGCCAGAGCCTTCCCCTCGTCAGCA AAGGGAGCAGCATCCAATTCCAGTTGCTCTTCCACCTCCACCACCATTGTCAAGGGCCCCGCCAGTAGCAAGGGAACGGC TGCCATCCCCACCTCCCCTACCTGAGAAAGTGGACCCACCTATTGTCACTCTGGATGATCTCTTCCGCAAAACCACAGCA ACTCCTCGGATCTACTATTTACCTTTGTCTGAAGAGCAAGTTGCCGCCAAACTTGCAGCACAGGGAAAAAGCACAAGGCA GTAG
Protein sequence (LotjaGi6g1v0084900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTSRVLDNRPIHQWKVTELREELKRRRLTTKGLKDDLIRRLDEALQAEADEAEAEAENARAEDAEASEKDDAERKGADP PDAEREGAVASEKDEANGVDGDVAGVKDSQTVTVDAEAADVNEKERAQTIETSEKVTSVEVETIETENAEKIPPEVVDYD SNKNDKQDGVTIPIDINNSVSTMDQEIEYSRLPAGADSANAGEDVIVHSSTLETTVTVTETVLTEVVVSGQDSDRVYKNN EDSGIKLDNEQSKVQLDSEDSKPQLQCDTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTI IADNVKLEQDFVRPELVQEPSSRNDEPVYDESNSMDVGGLHEKKASVEENTNNITSPDFNKTINSDDAGYPEKLNLDRSS GDDSMEEDVPETKQFDSKFNVDELSLRDKGENIEVSIVKEENNTVVVGDGLSAGKSDTNLDIDMSPVALADKRKYAEQAS VGNNEPAKRQRRWSTETRKGADLQSTTPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVPPSQRTPTNSLRIDRFLR PFTLKAVQELLGKTGKVSSFWMDQIKTHCYVTYSSIEEATETRNAVYNLQWPPNGGRLLIAEYVDPEDVKMKLEAPPPPP PQAASVSVPTVAPAPSSSQPEPSPRQQREQHPIPVALPPPPPLSRAPPVARERLPSPPPLPEKVDPPIVTLDDLFRKTTA TPRIYYLPLSEEQVAAKLAAQGKSTRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 60 | 58 | 1.9E-11 | ||
| PANTHER | 4 | 143 | 140 | 3.8E-244 | – | |
| PANTHER | 4 | 143 | 140 | 3.8E-244 | – | |
| SMART | 12 | 46 | 35 | 1.3E-9 | ||
| ProSiteProfiles | 12 | 46 | 35 | 9.766 | ||
| SUPERFAMILY | 12 | 49 | 38 | 3.3E-8 | ||
| Pfam | 14 | 46 | 33 | 6.0E-10 | ||
| Coils | 39 | 72 | 34 | - | – | |
| MobiDBLite | 49 | 172 | 124 | - | – | |
| MobiDBLite | 60 | 101 | 42 | - | – | |
| PANTHER | 117 | 745 | 629 | 3.8E-244 | – | |
| PANTHER | 117 | 745 | 629 | 3.8E-244 | – | |
| MobiDBLite | 138 | 165 | 28 | - | – | |
| MobiDBLite | 278 | 301 | 24 | - | – | |
| MobiDBLite | 281 | 301 | 21 | - | – | |
| MobiDBLite | 335 | 411 | 77 | - | – | |
| MobiDBLite | 344 | 368 | 25 | - | – | |
| MobiDBLite | 369 | 383 | 15 | - | – | |
| MobiDBLite | 391 | 411 | 21 | - | – | |
| MobiDBLite | 475 | 549 | 75 | - | – | |
| SUPERFAMILY | 544 | 631 | 88 | 1.89E-7 | ||
| CDD | 550 | 634 | 85 | 4.52538E-37 | ||
| MobiDBLite | 631 | 709 | 79 | - | – | |
| MobiDBLite | 673 | 705 | 33 | - | – | |
| Pfam | 702 | 743 | 42 | 1.9E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi6g1v0084900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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