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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0087900 |
| Transcript ID | LotjaGi6g1v0087900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2; TAIR: AT4G39860.1 hematological/neurological-like protein; Swiss-Prot: sp|Q9SIE0|ALKB2_ARATH DNA oxidative demethylase ALKBH2; TrEMBL-Plants: tr|I1MYS4|I1MYS4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0087900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:17783051..17786450) extracted from Lotus japonicus Gifu genome v1.2.
GAAAACAACGCCTAATTTAATTAAACTAAACAAACACACTTTCTCAATTTCAATTCAAATATTATGAGTGACTAATATCT CCCACCCTTCCACATTCACACTTCCCACAGCACAAGAATACCAGACACAATGCACGGAAACACGCCGGTGAGAAAGCCAC ACACCTCCACCTCCGATCTCCTCACCTGGTCTGAACTTCCTCCGCCGGACTCCGCCGCCACCGCCTCCGCCTCCGCCTCC TCCGGCATCCGCTCTCGCCAGGTTACTATTCATCAACTCTCTCTTCCTTCTTCAATCTCTCTTACTTCCTTTTCTGAATC ACTCACTGTCACTGCATTGACTTCATTCACAGCCTTCCGATAGAATCAGCAAGGTTCTCCATGGCGGCCAGCTCACTGAA GAAGAAGCTCAATCTCTAACCAAGAGGTATCCTTCTCTCTCTGCAGTAGTAGATCAGATCTACTAGTACTTTTCTTTTCC AGTTCATTTCTTCGTTCTTCGATCTGATTCAATGCATGTTTCGATCTGTTTTTCCATTTGAGATTTTGTTAAACTCGTTA CTGTTCAGGGTATAGGGTTTTAGCCTCTGCATCTGCTTAATCTGGTGTGCTAACAGTTAATTAGTAGAAAGTTGTTTTGC ATATGCATGTATGATAGGGTATCAATTTGGGAAATTTCAGGTTATTTTGTGTAATGAAAATGGTGAATCGATGTTGTGTG TGCTTAGCTAATTTTCAAGTTTTCATTTTTTTTTGTCTAACTTATATCCTTCCATTCGGTGTCAGCAAGCCGTGCTCGGG GTATAAAATGAAAGAGATCACTGGAAGTGGTATATTTTCAGCCAATGCTGAAGATTCAACATCAGAAGCAGGTTCTGCAA ATTCAAATGGCAGAACAAGCAGACGCTTAGTTCAGGTATGTTTACTATGTGTTTCGATTTCTGTTGAACTCAACATGGAT CCACATTGACTTCACCATGGAAAAATCTAGCTACTTAGATCCATGTTAAACTCAACGTGGTAAATTTTAGCTTCTTTGTT GATACCTTGAGATACGTGAAATCACGTTTGCGTTGGCCCTAACGCTAAAACAAACATAAACTTAGATGACTGATTTCCTT GGTCTGGGGTTCAGTTTGACCATATCAGCATTTCTCAAATATCAAACCAAATTCTATTCTGATGACAATTTACTTGTTTT CTTTTGTTTTCTGTGGGATGTGACTGGATTGTATCTCAGCAAGCAGTGAATGGAATTAGTCAGATATCATTCAGCACTGA GGAAAGCGTTTCTCCTAAGAAGCCTGCCACTATACCTGAGGTTGCAAAGCAGCGCGAACTGAGTGGGACACTGCAGAGTG AATTGGACAGTAAGAGCAATAAACTAATCTCAAATGCCAAGACCAAGGAGCTCACTGGAAATGATATATTTGGTCCTCCA CCTGAAATTGTGCCTCGTTCAGTGGCGGCTGCACGCATTACGGAATCAAAGGGAAGTAAAGATATGGGAGAACCTCTTCC CAGAAATTTGAGAACATCAGTGAAAGTTTCAAATGTAAGTGTCTTCTAGGCCTGCATGTGAATTGTGATCTATCATTTTA TGTTGGATGAATGGCTAGAGACTTTTTAGTTTCTGTCTAATCCCTTCTCATAGCATGGTTTTCAATGTGGGTTAACCTGC CTAGCCTTCTGTGCTATTTGTGGGCCTGTATCATCTACATGGTTCTTCATGGTGATGAATTTGACCTCTGATGATCCACC AATATTACCTTACACTTTCCTTTTTTTTTTAGGCAAATGTTAGTTGTTAATTGTTAGTAAATTAGTTCCTTCACCAGGGT TTGAACCCTGTTCTTTCACCCTTCAATACCCTTCATTTCCCTTAGCTCACCAAGTGAGCTTCCCATCCCACCCCACCTTA CACTTTCCTCAAATACAAAATTAAGATGTAGGTCGATTCAGATTTTTGCGGTAAGAAATTTATTTAAGATATAACTCAGT TGCAGCAGCTATAATAATACTACCATAACAGCTCTTGAGGAATATATATGTATATAATGTGGATATATTACTATTTTATC TCACTAACTTGGTTCCTTTTTATCTATCCTATTTGGAAGAAAAATACTGTTCCTATTTAACTTAGTAGTAGGATAATATT GCTCCTATATATTGTTCCCCTATTTCTGAATTAGGATGTAGTAGTGCTGTCAATTCCTTGTATGTGTTTTAAACTTGGTT CATGTGTTTTTTCTTCCTCCTGCAATGCCACTACTGCATTTTGAGCTGAAAATCTGATTTTTAACATTCCCTCTCGGTCT CATCATGTATATTGCCCATTAAAGAGTGCATCTGACCTTCATTTTCTTATATTTGTAGCCTGCAGGTGGCCAGAGTAATG ACTTATTTGGTGAAGCACCCGTTCTGAAGACATCAAAAAAGATACATGACCATAAGTTAGCAGAGCTGACGGGCACTAAT ATCTTTCAGGGAAATAATCCTCCAGGATCAGCAGAAAAGCCTCTGAGCAGGGCCAAGCTTAGAGAAATGACTGGAAGCAA CATATTTGCTGCTGATGCAAAGGCAGAAACCAAAGACCCGATTCGAGGTTCCCGCCAACCCCCTGGAGGAGAGAGCAGCA TTGCCTTACTTTAAGTGACGGCATTCTACAAATCTGTCTGAACTCACACGTTTTTAGGTACAAGGTTCAGTGTGGTTGTT CCGTTATCAGCATTGTAATTTGTCAGTTTCAACTTTTAGCTAGAACGGGGCATAAGTCACTCTTAGTTAGCACTTAAATA AGCAAAGGTGAAACCGGTCTCACCTGGATGATGTTTCAGTGTTCACTTATCCCCACCCTGCTAATTGCTAAAGAAAACTT CAATTATGCCTCGTTTTCTTGAGTAATCAAGGTCAAGGAACATATTTGATCCTGCTGTTGTATGACATAGACTTGAGGGT GCATTAATCTTCCAAGGTAGGTACGTGCAAACAAACACTCCAGTGCAAGTCATGTGATTGTAGAATCTGACTTCTATGTG TATTTTATTTTTTTAGTTTTTTCTTTTAATGTTTCATGCAAACTTGTTCGGCCTATTTCTCCTTTGCGGCTTGGAGAATG GTGATTATTGTTAGTTGAACCCATTTATGTGTATATCCAACAAGTTAATCTTTTGAAATAATTGATTCATGATAATCATA ACTTGGAACGTGACAGGTATATAAATTAGTTTTTTTCTTTTGTTGAAAAAACTAGTTAACATGGTAAGTCTAATTGAAAT TGGGAGATATTCAACTTTTTTTAACGTTGGGGATATATCAAACTTCAGATGTAAGGTATTGACCAAGATTCCACAATGCC TTATGCATTGGTTAGTCTAATTGATACTTAAGGATTAGAT
CDS sequence (LotjaGi6g1v0087900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACGGAAACACGCCGGTGAGAAAGCCACACACCTCCACCTCCGATCTCCTCACCTGGTCTGAACTTCCTCCGCCGGA CTCCGCCGCCACCGCCTCCGCCTCCGCCTCCTCCGGCATCCGCTCTCGCCAGCCTTCCGATAGAATCAGCAAGGTTCTCC ATGGCGGCCAGCTCACTGAAGAAGAAGCTCAATCTCTAACCAAGAGCAAGCCGTGCTCGGGGTATAAAATGAAAGAGATC ACTGGAAGTGGTATATTTTCAGCCAATGCTGAAGATTCAACATCAGAAGCAGGTTCTGCAAATTCAAATGGCAGAACAAG CAGACGCTTAGTTCAGCAAGCAGTGAATGGAATTAGTCAGATATCATTCAGCACTGAGGAAAGCGTTTCTCCTAAGAAGC CTGCCACTATACCTGAGGTTGCAAAGCAGCGCGAACTGAGTGGGACACTGCAGAGTGAATTGGACAGTAAGAGCAATAAA CTAATCTCAAATGCCAAGACCAAGGAGCTCACTGGAAATGATATATTTGGTCCTCCACCTGAAATTGTGCCTCGTTCAGT GGCGGCTGCACGCATTACGGAATCAAAGGGAAGTAAAGATATGGGAGAACCTCTTCCCAGAAATTTGAGAACATCAGTGA AAGTTTCAAATCCTGCAGGTGGCCAGAGTAATGACTTATTTGGTGAAGCACCCGTTCTGAAGACATCAAAAAAGATACAT GACCATAAGTTAGCAGAGCTGACGGGCACTAATATCTTTCAGGGAAATAATCCTCCAGGATCAGCAGAAAAGCCTCTGAG CAGGGCCAAGCTTAGAGAAATGACTGGAAGCAACATATTTGCTGCTGATGCAAAGGCAGAAACCAAAGACCCGATTCGAG GTTCCCGCCAACCCCCTGGAGGAGAGAGCAGCATTGCCTTACTTTAA
Protein sequence (LotjaGi6g1v0087900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHGNTPVRKPHTSTSDLLTWSELPPPDSAATASASASSGIRSRQPSDRISKVLHGGQLTEEEAQSLTKSKPCSGYKMKEI TGSGIFSANAEDSTSEAGSANSNGRTSRRLVQQAVNGISQISFSTEESVSPKKPATIPEVAKQRELSGTLQSELDSKSNK LISNAKTKELTGNDIFGPPPEIVPRSVAAARITESKGSKDMGEPLPRNLRTSVKVSNPAGGQSNDLFGEAPVLKTSKKIH DHKLAELTGTNIFQGNNPPGSAEKPLSRAKLREMTGSNIFAADAKAETKDPIRGSRQPPGGESSIALL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 307 | 307 | 6.1E-132 | – | |
| MobiDBLite | 1 | 109 | 109 | - | – | |
| PANTHER | 1 | 307 | 307 | 6.1E-132 | – | |
| Pfam | 4 | 306 | 303 | 1.0E-144 | ||
| MobiDBLite | 7 | 45 | 39 | - | – | |
| MobiDBLite | 86 | 109 | 24 | - | – | |
| MobiDBLite | 122 | 160 | 39 | - | – | |
| MobiDBLite | 145 | 160 | 16 | - | – | |
| MobiDBLite | 194 | 229 | 36 | - | – | |
| MobiDBLite | 279 | 308 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0087900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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