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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0087900 |
| Transcript ID | LotjaGi6g1v0087900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alpha-ketoglutarate-dependent dioxygenase alkB-like protein 2; TAIR: AT4G39860.1 hematological/neurological-like protein; Swiss-Prot: sp|Q9MA44|SIPL5_ARATH Signal peptide peptidase-like 5; TrEMBL-Plants: tr|A0A151U916|A0A151U916_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0087900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:17783180..17785704) extracted from Lotus japonicus Gifu genome v1.2.
ATGCACGGAAACACGCCGGTGAGAAAGCCACACACCTCCACCTCCGATCTCCTCACCTGGTCTGAACTTCCTCCGCCGGA CTCCGCCGCCACCGCCTCCGCCTCCGCCTCCTCCGGCATCCGCTCTCGCCAGGTTACTATTCATCAACTCTCTCTTCCTT CTTCAATCTCTCTTACTTCCTTTTCTGAATCACTCACTGTCACTGCATTGACTTCATTCACAGCCTTCCGATAGAATCAG CAAGGTTCTCCATGGCGGCCAGCTCACTGAAGAAGAAGCTCAATCTCTAACCAAGAGGTATCCTTCTCTCTCTGCAGTAG TAGATCAGATCTACTAGTACTTTTCTTTTCCAGTTCATTTCTTCGTTCTTCGATCTGATTCAATGCATGTTTCGATCTGT TTTTCCATTTGAGATTTTGTTAAACTCGTTACTGTTCAGGGTATAGGGTTTTAGCCTCTGCATCTGCTTAATCTGGTGTG CTAACAGTTAATTAGTAGAAAGTTGTTTTGCATATGCATGTATGATAGGGTATCAATTTGGGAAATTTCAGGTTATTTTG TGTAATGAAAATGGTGAATCGATGTTGTGTGTGCTTAGCTAATTTTCAAGTTTTCATTTTTTTTTGTCTAACTTATATCC TTCCATTCGGTGTCAGCAAGCCGTGCTCGGGGTATAAAATGAAAGAGATCACTGGAAGTGGTATATTTTCAGCCAATGCT GAAGATTCAACATCAGAAGCAGGTTCTGCAAATTCAAATGGCAGAACAAGCAGACGCTTAGTTCAGGTATGTTTACTATG TGTTTCGATTTCTGTTGAACTCAACATGGATCCACATTGACTTCACCATGGAAAAATCTAGCTACTTAGATCCATGTTAA ACTCAACGTGGTAAATTTTAGCTTCTTTGTTGATACCTTGAGATACGTGAAATCACGTTTGCGTTGGCCCTAACGCTAAA ACAAACATAAACTTAGATGACTGATTTCCTTGGTCTGGGGTTCAGTTTGACCATATCAGCATTTCTCAAATATCAAACCA AATTCTATTCTGATGACAATTTACTTGTTTTCTTTTGTTTTCTGTGGGATGTGACTGGATTGTATCTCAGCAAGCAGTGA ATGGAATTAGTCAGATATCATTCAGCACTGAGGAAAGCGTTTCTCCTAAGAAGCCTGCCACTATACCTGAGGTTGCAAAG CAGCGCGAACTGAGTGGGACACTGCAGAGTGAATTGGACAGTAAGAGCAATAAACTAATCTCAAATGCCAAGACCAAGGA GCTCACTGGAAATGATATATTTGGTCCTCCACCTGAAATTGTGCCTCGTTCAGTGGCGGCTGCACGCATTACGGAATCAA AGGGAAGTAAAGATATGGGAGAACCTCTTCCCAGAAATTTGAGAACATCAGTGAAAGTTTCAAATGTAAGTGTCTTCTAG GCCTGCATGTGAATTGTGATCTATCATTTTATGTTGGATGAATGGCTAGAGACTTTTTAGTTTCTGTCTAATCCCTTCTC ATAGCATGGTTTTCAATGTGGGTTAACCTGCCTAGCCTTCTGTGCTATTTGTGGGCCTGTATCATCTACATGGTTCTTCA TGGTGATGAATTTGACCTCTGATGATCCACCAATATTACCTTACACTTTCCTTTTTTTTTTAGGCAAATGTTAGTTGTTA ATTGTTAGTAAATTAGTTCCTTCACCAGGGTTTGAACCCTGTTCTTTCACCCTTCAATACCCTTCATTTCCCTTAGCTCA CCAAGTGAGCTTCCCATCCCACCCCACCTTACACTTTCCTCAAATACAAAATTAAGATGTAGGTCGATTCAGATTTTTGC GGTAAGAAATTTATTTAAGATATAACTCAGTTGCAGCAGCTATAATAATACTACCATAACAGCTCTTGAGGAATATATAT GTATATAATGTGGATATATTACTATTTTATCTCACTAACTTGGTTCCTTTTTATCTATCCTATTTGGAAGAAAAATACTG TTCCTATTTAACTTAGTAGTAGGATAATATTGCTCCTATATATTGTTCCCCTATTTCTGAATTAGGATGTAGTAGTGCTG TCAATTCCTTGTATGTGTTTTAAACTTGGTTCATGTGTTTTTTCTTCCTCCTGCAATGCCACTACTGCATTTTGAGCTGA AAATCTGATTTTTAACATTCCCTCTCGGTCTCATCATGTATATTGCCCATTAAAGAGTGCATCTGACCTTCATTTTCTTA TATTTGTAGCCTGCAGGTGGCCAGAGTAATGACTTATTTGGTGAAGCACCCGTTCTGAAGACATCAAAAAAGATACATGA CCATAAGTTAGCAGAGCTGACGGGCACTAATATCTTTCAGGGAAATAATCCTCCAGGATCAGCAGAAAAGCCTCTGAGCA GGGCCAAGCTTAGAGAAATGACTGGAAGCAACATATTTGCTGCTGATGCAAAGGCAGAAACCAAAGACCCGATTCGAGGT TCCCGCCAACCCCCTGGAGGAGAGAGCAGCATTGCCTTACTTTAA
CDS sequence (LotjaGi6g1v0087900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGAGATCACTGGAAGTGGTATATTTTCAGCCAATGCTGAAGATTCAACATCAGAAGCAGGTTCTGCAAATTCAAA TGGCAGAACAAGCAGACGCTTAGTTCAGCAAGCAGTGAATGGAATTAGTCAGATATCATTCAGCACTGAGGAAAGCGTTT CTCCTAAGAAGCCTGCCACTATACCTGAGGTTGCAAAGCAGCGCGAACTGAGTGGGACACTGCAGAGTGAATTGGACAGT AAGAGCAATAAACTAATCTCAAATGCCAAGACCAAGGAGCTCACTGGAAATGATATATTTGGTCCTCCACCTGAAATTGT GCCTCGTTCAGTGGCGGCTGCACGCATTACGGAATCAAAGGGAAGTAAAGATATGGGAGAACCTCTTCCCAGAAATTTGA GAACATCAGTGAAAGTTTCAAATCCTGCAGGTGGCCAGAGTAATGACTTATTTGGTGAAGCACCCGTTCTGAAGACATCA AAAAAGATACATGACCATAAGTTAGCAGAGCTGACGGGCACTAATATCTTTCAGGGAAATAATCCTCCAGGATCAGCAGA AAAGCCTCTGAGCAGGGCCAAGCTTAGAGAAATGACTGGAAGCAACATATTTGCTGCTGATGCAAAGGCAGAAACCAAAG ACCCGATTCGAGGTTCCCGCCAACCCCCTGGAGGAGAGAGCAGCATTGCCTTACTTTAA
Protein sequence (LotjaGi6g1v0087900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEITGSGIFSANAEDSTSEAGSANSNGRTSRRLVQQAVNGISQISFSTEESVSPKKPATIPEVAKQRELSGTLQSELDS KSNKLISNAKTKELTGNDIFGPPPEIVPRSVAAARITESKGSKDMGEPLPRNLRTSVKVSNPAGGQSNDLFGEAPVLKTS KKIHDHKLAELTGTNIFQGNNPPGSAEKPLSRAKLREMTGSNIFAADAKAETKDPIRGSRQPPGGESSIALL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 1 | 231 | 231 | 8.8E-100 | – | |
| PANTHER | 1 | 231 | 231 | 8.8E-100 | – | |
| Pfam | 1 | 230 | 230 | 9.1E-108 | ||
| MobiDBLite | 10 | 33 | 24 | - | – | |
| MobiDBLite | 46 | 84 | 39 | - | – | |
| MobiDBLite | 69 | 84 | 16 | - | – | |
| MobiDBLite | 118 | 153 | 36 | - | – | |
| MobiDBLite | 203 | 232 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0087900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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