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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0088800 |
| Transcript ID | LotjaGi6g1v0088800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT2G02520.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151RNK2|A0A151RNK2_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi6g1v0088800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:18750432..18754259) extracted from Lotus japonicus Gifu genome v1.2.
GGGAGAAGTGCAGAAACGGTGTGACACAGGATTCAATATTTTAGGTTTTTCTTGTACTTCTTTTAATTTCTTTTTAATGG TCATGTCAGGCTAAACTCCTTAGTGTTATGGTGAATGATCTAGTTTTCCTTTAAACTATATTTTGAACCAAGTTTCATTT ATGATTATGATTTCTATTTTTGTTCTTGAATTTCTCCTCTGTTTTAATTGATACTTTCTATTGCAATAGTTTGTCGTACT ATTTTCTATACAATTGGAAAATTGGTAGAATTTAGGGATTTCGGGAGAAATTGAGCAAGGGTCTGTGCGCCTTAGGAATA AGGGTAACGATTTGCTTGTGTTTGCCTGAATTGAAGTTGAGCAAGGGTCCGTGTTGATGATAGATTAATCAGATGTATGG CGGCTATCCTGAATTGCAGCGTTATGAGGATCCCATTCGTATATTTGGGTCTCCCAATTGGTGGCAACCCTCGCCGACTC TCTTTTCGGACCCCAATTATCAACAAACTGCATGGGAGATTGTCAAGGTGGAAACAGAAATCACTTACTTTTGGTGGAAG AATCTGCCTTATCAAGTCAGTTTTGTCATCCTTACCACTACATTTCTTGTCATTTTTTAAGATGCCCCCCGGGATAATCA AAAGATGCAACAGTATTATGCTGAATTTTCTTTCGGGAGGGGCTGATGGTGTTCGAAAGACAGCTTGGGTAAGCTGAGAC AATATTTGTAGGCCAAAGTCAGAAGGTGGACTAGGTGTGAAAAACTGGAGGCTTTTTAATGTGGCTTTACTGGCGAAATG GAGATGGAGGTTAATAGTAGGTGATTCAGGTTTATGGAGCTGTATTTTGAACTATAAATATAAAGGAGGATATCACGAGA AGGCCTCAATTTGGTGGAAGGACCTCTTCTCAATTTGCTTTGAGAGCGGAAGTAGCAATTGGTTTGATGAATCAATCTGT CGAAGGTTGGGAGATGGTAGCAGTATGCTGTTCTGGTACATTGACTGGTGCGGTCATGGCGTTCTAAAAGATAAATTTCC AAGGTTGTTGAGTATTTCAAAACAACAGCAGGCTTGCGTGAGTGAGGTTGGCGTTTGGGTGGCAGGAAGGTGGCAGTGGA ATTTGGAATGGCGAAGAGAGTTATTTGGCAGAGAATTGGGTATGCTAAATTGTATGTCTTCCTGGCGGACTGGTTTCTCA CCTACTATAGGCCAAACAGATCTGTGGACATGGGTGAAGGAAGGTTCCGGTGTATTTTCTGTCAGTTCAGCGTATGACTA TCTTCGTGGTGATGGGGCTGCTTCTGAATCAGAGATATTTAGCAAATTATGGGCTATCCAAGCTCCTTCCAATCATGTGG CGTTGGCCTTGAAAATTCTTATTAATCGTATTCAAACGAAGGTTAATTTACAAAGAAGGAATGCTCTACATCCCTCTGTT TCTAACCACTGTGTTCTATGTGCTCAGCATGAGGAAACCTCATCACTTTTATTCTTCTCATGCCCGGTGGTTTCGAGGAT ATGGATGCAGGTGTATTCGTGGTTGGGATTCTATACAGTTCTACCAGAGGAAGGAGTATCTCATTTCTCTCAGCATGTGG TGGGTTGTGGCAGAATGGATAAAATTCTCAGAATGATTTGGGTGGCTACAGTGGCTTCGATTTGGTCATTCAGAAACAAG GTTATATTTAAGAATGGGATAAGTGACAGTTCTGGAATTCTTGAGTTAATACAATACCAAAGCTGGCTGTGGTGCAAAGT GAAGGTGAGTGATTTTCACTATTCTGTGTTTGAATGGATAATGAACCCATTAGTGTGCATTAAATCTGCTATACATTAAC TGAAGGCTGCATACTATTTTGTTGAGGGTGCCAACGTGTGACAGACTAGTATTTTGGATGGGATTATTTTGTTATCTTGC CAAAGGACCAAAAGATTATCATTGCATTTGTACGGTGGAGTAGTACATCTGTTTGAGCTTGCAGGAATTGGTTATTTCTC AACTGTTTGCTATTGGAATGTTGATCATTTCTATGAGCAACATGGCTATATTCTGGCACTTTTTGGAGCATACCTTGAAG GCAAGTAGTGGGTGGTGTTTTCGTTCAAGCAGAAGTGTAATGGTTTTTGGGGGGTTGGCTGGTGCTGTTACCTTATTTAG TTCTAGTTTTTTAGTCCTCCTTGGAAGTTTCACTTTCATCTTAGCTAGTGGTACTCTTTTTCCTTACTAGGTTTTCCCAA GGGGGTTTTTCCTAGTAAGGTTTTAATGAGGCCTCTTTCTATGATCATTCTTCCAAGGTGGGGGTGGGGTGGGTTACCAT TTTTTAGCATTAGGTTCTTATGCTATTGTAATTATTTTACCTTTTCCTGGTATTGGGTTGAAGTACCCCTTGTACTTCAT TCAATATATATATATATATATATATATATATATATATATATATATATATATATATATCATTGCCTATAAAAAAAATTAGG ATTAGGTACTAAGGAATTAGTTATCACTAATTAATTGGAAGGGACACTTATGCAAGGAATTGATAAGTAGACAATTAGGC TTAGCACCTAGATAATTAATTGAATTCATAATTATAACTGTTTGGGAAGATACATAGGGAGAAGGTTAATGAAATCAGAT CCCTAGCGCGCTTTTAAATGGAATTCACTTCAACCGTGTTATTTGCTTTCTTTAATTTTATTGCAGTTAAGTTACCTACG AAAAACCAATCATCTCTTTATTTTAATTTTTATTTTCACGTCTTTTCATTCCGAGTTTAGTTAATTTAGGGTATAAACTA CGCAATCTTTATGGTTCGATCTTTTTATTACTTCGAGCAATCTGTACACTTGCAGATTCGCTATCAAGTTTTTGGCACCG TTGCCGGGGATTGTGTTTAGTTTATTTTCTATTTTATCTGAATCTAATTGTTAGGACTTTTATTTTTTAAATTTATTACT CTTGTGCGGGTGCTACTGACTGTTGTTTGCTAGTGCATGCAAGGTACAATCAAGCGAACACCATGGCTGAAACACAAGAG GAGTTTGAAGCAAGAATTCGGGCTAAGTATGAAGCGGAGCTGCAATCTAAGGTTGAAGCTATGAGTGCCCAGGAGGAGTT CGAGAGAAAACTCCGAGTTAAACTTGAAGCATAATATGCTGAAAAAAGGCATGTTATATTGCAGTTGGAGAAAGAATTTT ATGCTAATTGGAAGTGTATTCGTGAAAGTGGATCTCATCGACAAGAACACGAATGGATAGCTCAATCCAATGTCCTACGA GCAAAAGCATCCTGCATTCTGCGGACACGAGCAGGTCATCAAAGTCATGACGAATCACCTATTGGTCATGAATGTGATTC CTTGGAGCAATGTGAGGAAGCACCAATTGAAGAAAATGAGAATTGCGAGTTAGTTGAAGAAAATATCTCTCGTCAAGCCA TTGAGGAAGAAGAGAAAGAATTTCCTGAAGAAGAACTCACAGTTTGTCAAGAACTAGAAAAAGACATGACAATGGGTGAA GCGAAAGAAGCATTGATTGACTCCGGACCAAAAGAAACCTTCAATGTGGATTTTGTGTATGGAGATGAATTGATGATGCA GGTAAGCCTCAAAGTCTAAGCCTATATCTTAATGACCTATGGATCAAAGGTGAATATGGTAAGGGAAATAAACACTCATG GAAATACATTGATAAGAACTTCCCTAACCTCCTTACTTTTAAGTTGATTTATTTGGCCATGATCTTTGAGAGTGAATGCA TTGTGATGATGAACTTATGTGAAAATTTGTATGAACTAAATGATTTAATCGAATTTGCAATAGACCCT
CDS sequence (LotjaGi6g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTGTTCTGGTACATTGACTGGTGCGGTCATGGCGTTCTAAAAGATAAATTTCCAAGGTTGTTGAGTATTTCAAAACA ACAGCAGGCTTGCGTGAGTGAGGTTGGCGTTTGGGTGGCAGGAAGGTGGCAGTGGAATTTGGAATGGCGAAGAGAGTTAT TTGGCAGAGAATTGGGTATGCTAAATTGTATGTCTTCCTGGCGGACTGGTTTCTCACCTACTATAGGCCAAACAGATCTG TGGACATGGGTGAAGGAAGGTTCCGGTGTATTTTCTGTCAGTTCAGCGTATGACTATCTTCGTGGTGATGGGGCTGCTTC TGAATCAGAGATATTTAGCAAATTATGGGCTATCCAAGCTCCTTCCAATCATGTGGCGTTGGCCTTGAAAATTCTTATTA ATCGTATTCAAACGAAGGTTAATTTACAAAGAAGGAATGCTCTACATCCCTCTGTTTCTAACCACTGTGTTCTATGTGCT CAGCATGAGGAAACCTCATCACTTTTATTCTTCTCATGCCCGGTGGTTTCGAGGATATGGATGCAGGTGTATTCGTGGTT GGGATTCTATACAGTTCTACCAGAGGAAGGAGTATCTCATTTCTCTCAGCATGTGGTGGGTTGTGGCAGAATGGATAAAA TTCTCAGAATGATTTGGGTGGCTACAGTGGCTTCGATTTGGTCATTCAGAAACAAGGTTATATTTAAGAATGGGATAAGT GACAGTTCTGGAATTCTTGAGTTAATACAATACCAAAGCTGGCTGTGGTGCAAAGTGAAGGTGAGTGATTTTCACTATTC TGTGTTTGAATGGATAATGAACCCATTAGTGTGCATTAAATCTGCTATACATTAA
Protein sequence (LotjaGi6g1v0088800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLFWYIDWCGHGVLKDKFPRLLSISKQQQACVSEVGVWVAGRWQWNLEWRRELFGRELGMLNCMSSWRTGFSPTIGQTDL WTWVKEGSGVFSVSSAYDYLRGDGAASESEIFSKLWAIQAPSNHVALALKILINRIQTKVNLQRRNALHPSVSNHCVLCA QHEETSSLLFFSCPVVSRIWMQVYSWLGFYTVLPEEGVSHFSQHVVGCGRMDKILRMIWVATVASIWSFRNKVIFKNGIS DSSGILELIQYQSWLWCKVKVSDFHYSVFEWIMNPLVCIKSAIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 138 | 137 | 3.9E-27 | – | |
| Pfam | 91 | 180 | 90 | 1.3E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0088800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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