Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi6g1v0094500 |
Transcript ID | LotjaGi6g1v0094500.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | lysine ketoglutarate reductase trans-splicing protein (DUF707); TAIR: AT1G67850.1 lysine ketoglutarate reductase trans-splicing protein (DUF707); Swiss-Prot: sp|Q8JVC1|CAPSD_PCVC Capsid protein; TrEMBL-Plants: tr|V7D1Y5|V7D1Y5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0094500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20431309..20437957) extracted from Lotus japonicus Gifu genome v1.2.
CGTGTTTGTTTGTTTGAAAAGTCACTTATATCAAATGGCGGTATAAGAAGGGAACTCCAAAATCAAAACCAAGAAAGGGT CTAAAACCAAACTCTACGTCTAAAGGAATAAGACCTTGACCCTGGTGTTTTTTTTTGAAAAGGACCCTGGTGTTACTTGA TATAACTTTGAAAGGTTTTTGTTTGGTAGTGCTTATAAACCCAAACCAGACACAGGGAAGAAGATCCCATCGCCGATTCA TTTGTAAACCGTCATCGTTTCCACTCCCTCGCAGCTCAGCTACTTAACCGTTGTTTTGTTTATCTCTCTCTGCTTTCAAC ACACAAAAAACCTTCCACTTTTCCTCAGATCTTCATCTTCCTCCTCCTGGTACGTATGTTTCTCCAATTAATTGTCTTTT CAGTTTCAAAATCAATAGAAACCCAAAACGGTAATTTCAAATTACACAGCAATCCTTCACTGTAACGGAAATTTCAAAAT CAAAAAATTAAATGGTCCTTGGTCACAATTTAGATTAGGTTAGTTCGTAGAATTGTGCCTACTTTAATTGACTTATTTTG CTTCTGGGAAAACTTTAAATTTCTAAAAAGAGCTTTTTTTGCAAAGCTTTTTCTTAATGCAAAATGAATTTGGTAATCCA AAAATGGCAAGTTCTGTACCTTTTTCTTTCTTTCTTTTACTTTCGGTAGTATTTGCTATATTTGCATATAAACTGCCGCA TGGTTTTCTTGAGGGTCATTATCATGTTTATCATCTTTTGTCAAAAGAGATCACATGAGATGAGTTGTTTAACCTCTCGA GTTATTGAGGAGGTTATTGAGGAAATGCACATGTTATTCTTGCATATGATTTGTTTTACTCATTGCCTTTTAGCAAGGGG TGCTAGCTAAATTTTGTCCATTTGCTGTTGCTTCTAGGCAACCTCTTGCGCGTTTATGGTCCGATAAGTTTCTATATATG GTTTGTAGAAGGCTTTCATAACTAGGACTGAAGTGATCGGACTTGAGAATCCCACTGGTATATTGAGGATTTGGGGTCAT GTTGAGGGATATTGTATTGCGAACGTCAACGATATAAACTCTTTCGTCGAGTAGTTATCCTTTATCTTCTTTGACATTTG AATCATTATCTGGTTCCTTCTTTTAATATATCTTGTTCTTCATTTTTTGTTTCTTCAGCAGGACTTTTATTCGTTTGACA AGCATATCTGTTTCTTATACGGAGGATATGTTCCTTGGTGAAGCATAGCTTGTACATATAGTTTTGTGAGAATAAAGCTA GAGAATTTCCGAATATAAATGGGGATCAATACTCGCAGGTCTGATCATTGGTGATATCTGACTTTGTTATTTTGTTTGCG ATGAGAAATTTTTCATATGCCAGTTAATGTCAGTAACACCATTCAAGTGTCATTTCTTTTTCATTGGCTGCAGTCTTACT ACCAGAAAACCAAGTGAAATTATGAGGCTCTTTGTGACAACTTTTATTGGAGTGGTTTTCGGCTTCTTTATAGGAGTATC ATTTCCCACATTGTCAATAACAAAGGTGCAGACTGAGTATCTTCTTCCTCCTTATGGGTCATCTTTGCGCTCAAGTAAAA TTTTCAATGATTTTATGTTATTGGACTTAATAATCCAATTCTAATTGTGCATAGTAATTTGCAGCTGAATCTTCCTTCTG GTCTGCTTCCCTCCATTGATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGT AACAGAAGTCCATCTGTAGATCACTCATCAAATGATACATCAAAGGTACATATCGTATTCTATCATCATTAATAAGGACT TTTTTAGTTCCTGGATTTACACGGATCTAGGAAGTTGATGACTCTATACCCTCTATGATTGAGAAGAAATAATATTGTTA GCCTTCTGTTACTAGAAGCTCCCATTACATGACATTTTCATATTTTTACGCATTAGGGCTTCCTGGAAAGATTTTAGTTT TTATATTATTGGGTGTATATTCATCAATTTCTTTGTCCTTTTTTATTGTTTCTCTTCAGATTTGGGTTCCATCAAATCCG AAAGGCGCAGAAAGATTACCTCCTGGGATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAG TGAGGTGTGTATCCTAAAACTGTTTATAGGTTCAATGTGGTAACAATCTCCAAATGTCCTAAGAAAAAACTTCTTATTTT TCATTTTTTTACATGGGGAGGAATGGAAGCTTAGATAGCTGTCCTTTTGCATGCGTGGAGCCGTGGAAATAATGTAGCTA AATACATATTAAGGGCCTTTTAAGTGTTATACGCTAGTTAGTGAAATTATCAAAAAAAGTCTTTGCATATATTTGTTAGG TAATTTACTTGTTAATGGGAAAGAAACATAATAAACCAAAGTGGATGCGGCATTTGACTAAGGTGGTACCTGCAGGATTT AACGTCCAAGCCAAAGTACCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGG TCTTAGTCCCTTCCTCTCTCTGTTTGCACATGCTTATTTATGTGTCTTTTAACTAAAATTGCTTGAACAGTTCTCAGAGA ACTTCACAATCCTTCTATTTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTATTCAT GTGAGTGCTCGTAAACAGACCAAATGGTAAGAAAAAATGTGTTTTCTTAAATTTTGGATGGTAGATTTTTATTGTGGCTT TTTTCTGTTGATAGTGTTTACCTAATTTTAAAGTGGTTTGCTATTTCATTTTTGTTATCATATGATTCATATTGACCATT TAGTTGTTTTCCATCCTAGGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACTATATATTTATA TGGGATGAAGACCTGGGCGTTGAGCATTTTAATGCAGAAGCGTGAGTATTTAATATGGGAGGGATACTTTCTAAAAGATT TTACTTTTATATTGAAGTTTCATATTACCCTCTTATTTCAAGTGCAGATACTTAAAACTAGTGAGGAAGCATGGCTTGGA GATTTCACAGCCTGGTCTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGAAGTCCACA AGTAAGAATGAACAGAGTCCTTTGCTAGTTTTCTTGAGGTTGATTTTATTTAAAACGATGTGCATTAACTGTTTATTTTC TTGGATTTCTATTAGAATGACAGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTAAGTAA CTGCTGATTATTAATGTTGTATTATCTAGTCCAAGGTTGTCAAAATCAATATCACTTTGGATTGGGAGGGGATTGAAAGA TCATGATCAAAATCGTAGTACAGAATGTAACATCCTAACTATAAATGCAAAGTTATACACACACATGCATAATCGAAAAC ATAGATTAGGAAAAATAACCTCTAAATCACAATAAACATTTAATTAAATTTCAATTGAAAATTCATAGTTTCATAAGTTA CATAAGTTTTTGATAACACATAAAACTAAAACATGAAAGAAAATCCAACTTCTTCAGTCTTCACCCACAGATAGACACCA GAGAGGCTTGAAATAGTGACAAACAACAAAGACCAAAATGCTCAATTCTGTGACAAACAACAGATAGAGACTCCGGAACC TGCGAACCAGAGAGCCTTGGACCAGAAGTGTGAGGGAAGAACCAGATAGCAATTGGTTGGGAAAGATGGGTCTCAATTCT CGAAGATGTATTTATCGAAGATTGGGTGTAGGAACAATGAGGAGTTGAGGTCATGGAGCAGAGACAAGGGTTTCAACCTG GTCAGATGACCCAACCTGGGTTGTATGTTGGCTGCAAACTCATTCCAACACGCCAATCCTACTGTCTTACGTGTCTGCCT AGGGATCCTGAACAAGTCATCTAGATAGAAATTTCTGGTGGGAACAAGATCTTATTGCAAGGGGAAACTTGTAGGAATGT GAAATCATATATCGACACCTGATTTTAACAATGGTCTGGTCTACCAAGCTGGTAATACTGCAGTAAAATGGTAGAGTCCC GTCTTAAGTGGTTTGAATGTGTGGAGAAGACTTGACGAACCACCGGGAAGGAGTAGACTTGATGGATTCCGGTATTTTGG AGTTGACTGAGAAAAACTATTAACCAAACCATAAGATTTGGATATCAATTATCATTAGATTTGAATCATGACAAGGTTAT TTCATCTTGTAGTCAAAATCACATAGTGGAAAAAAGCTTTGGTTGTTGTTTGTCTGGTCTACATGTATCTAATTCACTGT GTTTTTCACTGTATATCAATGCAGGTTTGTTGAGATTATGGCTCCAGTATTTTCACGTGATGCATGGCGTTGTGTGTGGC ATATGATTCAGGTTGAATGGTTACTCCTATTTGTTTTTAAAGATGAAAAATGGTCGGTTGTCTAGTGATATTTCAAGCAC TTGATAAATTATAACAGTACCACTCTTGTCATTGCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAA GATGTGTTGAGGTGAGTACATTCAGGCATTTTTCTCAAATTATTTAATTTCTTGACTACTTACTTAAATAGTGTGGCCTT AGCCGAGCCACACCAAAGAAATGAAGAAAAAAGAGAAGTTTACAATCTACACATGCTATGTAGCTTTAACGATATTTTTT ATTTTATATAGCCTGCTCATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGGTGTTCCCACACTAGGG AATCAGGTAATTTGTTTACCATGATTGTTCTTTTTATACTTGATAATTCTACATTAAAATGACGCTGTAAAATGCCTTAT TAATTTTCCTGTTATTTGCAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTATGTTTTGCACGTTTCATGTT ATGCAGCTTCATTTCATTATGTATTATTCATTTTGATTACTTCCCATGTGAATGTGATTATCTGATATGGTATTTGGCTT CTGTTTCTCACATTCTATTGAACTCATCAAGAATCTGTATTATGATGTAATCTAATGAACTTCAACTATGAAATTTGTTG ATTTTTCCATCTTCTTGTTACCAGGTGAGGGAGAGGTGTAAAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCCTATGC AGAAAACGCGTACTTCAAGTCCATTGGAGTTGATCTTTCTAACTCCACTGCTCATTAGGGTACAACAGCCAGTGTTGACT TTTGTATTTAAAATATACTCATGTAACATCTGTTACATTACATGCCATTAATATCTAGAGTCCTAGCTAGGGGACCAAAC TTTGATTCAATGTAGCATTGAAGTTCTGAAAGTGAGTAGAAGTTAAATATTGCGGTGTAAGTAATTTTGAAAATGATACC ATTTCAGTAGGAAATGAAAATTCCTGTCTCCCTTAATTGGAATTGGCATGAAGCTCTTCAGGTATGAGCATCTTTATCCA TCACATTCACTAGAGTGTCTACACTTTATTTTTCACAATTTTCCATTGTGCCACATCATCTAAACCACTTACTAATTTTT TACTCCAACCCAAAACCTCTTAAAAGTTTCTCTTGTAGATCCCACAATCAACTACATACTTTAGGGGATTAAATGATAAG CAAATATAATAATATTTTATATGAACATATTTATGAGAGACACATGAGAGAGAAGTGTCTACACTACCACACCCAAATTA GACATGGTGGAAGAACCATTTCTCTCCAATGGTGTGAGACACTAGTGGGAGAGTCTCTTTAGAGAGACACTCCTATTGGA GATGCTCTTAGATCACTGAAAAACTTTAGTAGAAGACAATTAAATGAAATATTGTTGGTCATTACTGTGTGGATAACTCA AATGGTAAGAGTTAGGGACATAAGAGTTGGGTGGGATGAAGGGTGAAGGGTCCAGGGTCCGAACTATGAGGAGGACTAAT TTACTAACATTACTAATAATTAACATTTGTCTATTTAAAAAAAATTGTGGATTTTGAAGAAAGAATTAATTTTGATTTCG TATCATATTGGAATAATTTTTCTATTACATGGTATCATAAAATAGTTGTATAAGATATTTGACGTATTTTATTTTATTTT CATCCATTATTAACTATCTAGATATATATGTTAGTCTTTTTCTTTGAAAGAGATATTATGTTAGTCTTTGCCTTAGGAAA TGTTTACATCAACAGTCCAAAGAAAAACATGTTGAGAAAACAGAAAATGGAAAGAGTCATATGATCAAAATCGTATGGAA GGCCAGTCAGATACGCGGGTTCTAAATTTCTCATATATATATATATATATATGTGGTATCGTTGCGTGTAAGTTATGACA TGTAAATCTGTTGAACTTTCTAGTTTCTAGATTCTTCTAATGATTGTAGTGGAGATGAAGTCTTTGCGTCACTATATTTG AATAGATGAGTATACTGAATTTTTTTCTGCTATAGAACTATTGGTTAAGGAATTTGTTCCAAATACTAGGAAAAGCACCG GTAAATGCC
CDS sequence (LotjaGi6g1v0094500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATCAATACTCGCAGTCTTACTACCAGAAAACCAAGTGAAATTATGAGGCTCTTTGTGACAACTTTTATTGGAGT GGTTTTCGGCTTCTTTATAGGAGTATCATTTCCCACATTGTCAATAACAAAGCTGAATCTTCCTTCTGGTCTGCTTCCCT CCATTGATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGTAACAGAAGTCCA TCTGTAGATCACTCATCAAATGATACATCAAAGATTTGGGTTCCATCAAATCCGAAAGGCGCAGAAAGATTACCTCCTGG GATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGATTTAACGTCCAAGCCAAAGT ACCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGTTCTCAGAGAACTTCACA ATCCTTCTATTTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTATTCATGTGAGTGC TCGTAAACAGACCAAATGGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACTATATATTTATAT GGGATGAAGACCTGGGCGTTGAGCATTTTAATGCAGAAGCATACTTAAAACTAGTGAGGAAGCATGGCTTGGAGATTTCA CAGCCTGGTCTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGAAGTCCACAAAATGAC AGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTTTGTTGAGATTATGGCTCCAGTATTTT CACGTGATGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGA AGATGTGTTGAGCCTGCTCATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGGTGTTCCCACACTAGG GAATCAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTGAGGGAGAGGTGTAAAAAGGAGTGGACCATGTTCC AGAGTCGGTTGGCCTATGCAGAAAACGCGTACTTCAAGTCCATTGGAGTTGATCTTTCTAACTCCACTGCTCATTAG
Protein sequence (LotjaGi6g1v0094500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGINTRSLTTRKPSEIMRLFVTTFIGVVFGFFIGVSFPTLSITKLNLPSGLLPSIDLSYLEDRYTSRHAWSFINKSNRSP SVDHSSNDTSKIWVPSNPKGAERLPPGIVEPETDFYLRRLWGKPSEDLTSKPKYLVTFTVGYDQKHNIDAAVKKFSENFT ILLFHYDGRTTEWEEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAEAYLKLVRKHGLEIS QPGLEPNKGLTWQMTKRRGDSEVHKMTEEKPGWCSDPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFALR RCVEPAHEKIGVVDSQWIVHQGVPTLGNQGESKTGGKPWQGVRERCKKEWTMFQSRLAYAENAYFKSIGVDLSNSTAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 15 | 15 | - | – | |
PANTHER | 6 | 394 | 389 | 1.6E-227 | – | |
PANTHER | 6 | 394 | 389 | 1.6E-227 | ||
Phobius | 16 | 37 | 22 | - | – | |
TMHMM | 20 | 42 | 23 | - | – | |
Phobius | 38 | 398 | 361 | - | – | |
Pfam | 96 | 382 | 287 | 1.6E-140 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0094500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…