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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0094500 |
| Transcript ID | LotjaGi6g1v0094500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | lysine ketoglutarate reductase trans-splicing protein (DUF707); TAIR: AT1G67850.1 lysine ketoglutarate reductase trans-splicing protein (DUF707); Swiss-Prot: sp|Q8JVC1|CAPSD_PCVC Capsid protein; TrEMBL-Plants: tr|V7D1Y5|V7D1Y5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0094500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20432620..20436659) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGATCAATACTCGCAGGTCTGATCATTGGTGATATCTGACTTTGTTATTTTGTTTGCGATGAGAAATTTTTCATAT GCCAGTTAATGTCAGTAACACCATTCAAGTGTCATTTCTTTTTCATTGGCTGCAGTCTTACTACCAGAAAACCAAGTGAA ATTATGAGGCTCTTTGTGACAACTTTTATTGGAGTGGTTTTCGGCTTCTTTATAGGAGTATCATTTCCCACATTGTCAAT AACAAAGGTGCAGACTGAGTATCTTCTTCCTCCTTATGGGTCATCTTTGCGCTCAAGTAAAATTTTCAATGATTTTATGT TATTGGACTTAATAATCCAATTCTAATTGTGCATAGTAATTTGCAGCTGAATCTTCCTTCTGGTCTGCTTCCCTCCATTG ATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGTAACAGAAGTCCATCTGTA GATCACTCATCAAATGATACATCAAAGGTACATATCGTATTCTATCATCATTAATAAGGACTTTTTTAGTTCCTGGATTT ACACGGATCTAGGAAGTTGATGACTCTATACCCTCTATGATTGAGAAGAAATAATATTGTTAGCCTTCTGTTACTAGAAG CTCCCATTACATGACATTTTCATATTTTTACGCATTAGGGCTTCCTGGAAAGATTTTAGTTTTTATATTATTGGGTGTAT ATTCATCAATTTCTTTGTCCTTTTTTATTGTTTCTCTTCAGATTTGGGTTCCATCAAATCCGAAAGGCGCAGAAAGATTA CCTCCTGGGATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGTGTGTATCCTAAA ACTGTTTATAGGTTCAATGTGGTAACAATCTCCAAATGTCCTAAGAAAAAACTTCTTATTTTTCATTTTTTTACATGGGG AGGAATGGAAGCTTAGATAGCTGTCCTTTTGCATGCGTGGAGCCGTGGAAATAATGTAGCTAAATACATATTAAGGGCCT TTTAAGTGTTATACGCTAGTTAGTGAAATTATCAAAAAAAGTCTTTGCATATATTTGTTAGGTAATTTACTTGTTAATGG GAAAGAAACATAATAAACCAAAGTGGATGCGGCATTTGACTAAGGTGGTACCTGCAGGATTTAACGTCCAAGCCAAAGTA CCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGGTCTTAGTCCCTTCCTCTC TCTGTTTGCACATGCTTATTTATGTGTCTTTTAACTAAAATTGCTTGAACAGTTCTCAGAGAACTTCACAATCCTTCTAT TTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTATTCATGTGAGTGCTCGTAAACAG ACCAAATGGTAAGAAAAAATGTGTTTTCTTAAATTTTGGATGGTAGATTTTTATTGTGGCTTTTTTCTGTTGATAGTGTT TACCTAATTTTAAAGTGGTTTGCTATTTCATTTTTGTTATCATATGATTCATATTGACCATTTAGTTGTTTTCCATCCTA GGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACTATATATTTATATGGGATGAAGACCTGGGC GTTGAGCATTTTAATGCAGAAGCGTGAGTATTTAATATGGGAGGGATACTTTCTAAAAGATTTTACTTTTATATTGAAGT TTCATATTACCCTCTTATTTCAAGTGCAGATACTTAAAACTAGTGAGGAAGCATGGCTTGGAGATTTCACAGCCTGGTCT GGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGAAGTCCACAAGTAAGAATGAACAGAGT CCTTTGCTAGTTTTCTTGAGGTTGATTTTATTTAAAACGATGTGCATTAACTGTTTATTTTCTTGGATTTCTATTAGAAT GACAGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTAAGTAACTGCTGATTATTAATGTT GTATTATCTAGTCCAAGGTTGTCAAAATCAATATCACTTTGGATTGGGAGGGGATTGAAAGATCATGATCAAAATCGTAG TACAGAATGTAACATCCTAACTATAAATGCAAAGTTATACACACACATGCATAATCGAAAACATAGATTAGGAAAAATAA CCTCTAAATCACAATAAACATTTAATTAAATTTCAATTGAAAATTCATAGTTTCATAAGTTACATAAGTTTTTGATAACA CATAAAACTAAAACATGAAAGAAAATCCAACTTCTTCAGTCTTCACCCACAGATAGACACCAGAGAGGCTTGAAATAGTG ACAAACAACAAAGACCAAAATGCTCAATTCTGTGACAAACAACAGATAGAGACTCCGGAACCTGCGAACCAGAGAGCCTT GGACCAGAAGTGTGAGGGAAGAACCAGATAGCAATTGGTTGGGAAAGATGGGTCTCAATTCTCGAAGATGTATTTATCGA AGATTGGGTGTAGGAACAATGAGGAGTTGAGGTCATGGAGCAGAGACAAGGGTTTCAACCTGGTCAGATGACCCAACCTG GGTTGTATGTTGGCTGCAAACTCATTCCAACACGCCAATCCTACTGTCTTACGTGTCTGCCTAGGGATCCTGAACAAGTC ATCTAGATAGAAATTTCTGGTGGGAACAAGATCTTATTGCAAGGGGAAACTTGTAGGAATGTGAAATCATATATCGACAC CTGATTTTAACAATGGTCTGGTCTACCAAGCTGGTAATACTGCAGTAAAATGGTAGAGTCCCGTCTTAAGTGGTTTGAAT GTGTGGAGAAGACTTGACGAACCACCGGGAAGGAGTAGACTTGATGGATTCCGGTATTTTGGAGTTGACTGAGAAAAACT ATTAACCAAACCATAAGATTTGGATATCAATTATCATTAGATTTGAATCATGACAAGGTTATTTCATCTTGTAGTCAAAA TCACATAGTGGAAAAAAGCTTTGGTTGTTGTTTGTCTGGTCTACATGTATCTAATTCACTGTGTTTTTCACTGTATATCA ATGCAGGTTTGTTGAGATTATGGCTCCAGTATTTTCACGTGATGCATGGCGTTGTGTGTGGCATATGATTCAGGTTGAAT GGTTACTCCTATTTGTTTTTAAAGATGAAAAATGGTCGGTTGTCTAGTGATATTTCAAGCACTTGATAAATTATAACAGT ACCACTCTTGTCATTGCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAGATGTGTTGAGGTGAGTA CATTCAGGCATTTTTCTCAAATTATTTAATTTCTTGACTACTTACTTAAATAGTGTGGCCTTAGCCGAGCCACACCAAAG AAATGAAGAAAAAAGAGAAGTTTACAATCTACACATGCTATGTAGCTTTAACGATATTTTTTATTTTATATAGCCTGCTC ATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGGTGTTCCCACACTAGGGAATCAGGTAATTTGTTTA CCATGATTGTTCTTTTTATACTTGATAATTCTACATTAAAATGACGCTGTAAAATGCCTTATTAATTTTCCTGTTATTTG CAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTATGTTTTGCACGTTTCATGTTATGCAGCTTCATTTCATT ATGTATTATTCATTTTGATTACTTCCCATGTGAATGTGATTATCTGATATGGTATTTGGCTTCTGTTTCTCACATTCTAT TGAACTCATCAAGAATCTGTATTATGATGTAATCTAATGAACTTCAACTATGAAATTTGTTGATTTTTCCATCTTCTTGT TACCAGGTGAGGGAGAGGTGTAAAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCCTATGCAGAAAACGCGTACTTCAA GTCCATTGGAGTTGATCTTTCTAACTCCACTGCTCATTAG
CDS sequence (LotjaGi6g1v0094500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATCAATACTCGCAGTCTTACTACCAGAAAACCAAGTGAAATTATGAGGCTCTTTGTGACAACTTTTATTGGAGT GGTTTTCGGCTTCTTTATAGGAGTATCATTTCCCACATTGTCAATAACAAAGCTGAATCTTCCTTCTGGTCTGCTTCCCT CCATTGATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGTAACAGAAGTCCA TCTGTAGATCACTCATCAAATGATACATCAAAGATTTGGGTTCCATCAAATCCGAAAGGCGCAGAAAGATTACCTCCTGG GATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGATTTAACGTCCAAGCCAAAGT ACCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGTTCTCAGAGAACTTCACA ATCCTTCTATTTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTATTCATGTGAGTGC TCGTAAACAGACCAAATGGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACTATATATTTATAT GGGATGAAGACCTGGGCGTTGAGCATTTTAATGCAGAATGCAGATACTTAAAACTAGTGAGGAAGCATGGCTTGGAGATT TCACAGCCTGGTCTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGAAGTCCACAAAAT GACAGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTTTGTTGAGATTATGGCTCCAGTAT TTTCACGTGATGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTT AGAAGATGTGTTGAGCCTGCTCATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGGTGTTCCCACACT AGGGAATCAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTGAGGGAGAGGTGTAAAAAGGAGTGGACCATGT TCCAGAGTCGGTTGGCCTATGCAGAAAACGCGTACTTCAAGTCCATTGGAGTTGATCTTTCTAACTCCACTGCTCATTAG
Protein sequence (LotjaGi6g1v0094500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGINTRSLTTRKPSEIMRLFVTTFIGVVFGFFIGVSFPTLSITKLNLPSGLLPSIDLSYLEDRYTSRHAWSFINKSNRSP SVDHSSNDTSKIWVPSNPKGAERLPPGIVEPETDFYLRRLWGKPSEDLTSKPKYLVTFTVGYDQKHNIDAAVKKFSENFT ILLFHYDGRTTEWEEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAECRYLKLVRKHGLEI SQPGLEPNKGLTWQMTKRRGDSEVHKMTEEKPGWCSDPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGLDFAL RRCVEPAHEKIGVVDSQWIVHQGVPTLGNQGESKTGGKPWQGVRERCKKEWTMFQSRLAYAENAYFKSIGVDLSNSTAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 6 | 395 | 390 | 6.9E-226 | – | |
| PANTHER | 6 | 395 | 390 | 6.9E-226 | ||
| Phobius | 16 | 37 | 22 | - | – | |
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 38 | 399 | 362 | - | – | |
| Pfam | 96 | 383 | 288 | 3.5E-139 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0094500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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