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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0094500 |
| Transcript ID | LotjaGi6g1v0094500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | lysine ketoglutarate reductase trans-splicing protein (DUF707); TAIR: AT1G67850.4 lysine ketoglutarate reductase trans-splicing protein (DUF707); Swiss-Prot: sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic; TrEMBL-Plants: tr|V7D1Y5|V7D1Y5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0094500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20432620..20436659) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGATCAATACTCGCAGGTCTGATCATTGGTGATATCTGACTTTGTTATTTTGTTTGCGATGAGAAATTTTTCATAT GCCAGTTAATGTCAGTAACACCATTCAAGTGTCATTTCTTTTTCATTGGCTGCAGTCTTACTACCAGAAAACCAAGTGAA ATTATGAGGCTCTTTGTGACAACTTTTATTGGAGTGGTTTTCGGCTTCTTTATAGGAGTATCATTTCCCACATTGTCAAT AACAAAGGTGCAGACTGAGTATCTTCTTCCTCCTTATGGGTCATCTTTGCGCTCAAGTAAAATTTTCAATGATTTTATGT TATTGGACTTAATAATCCAATTCTAATTGTGCATAGTAATTTGCAGCTGAATCTTCCTTCTGGTCTGCTTCCCTCCATTG ATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGTAACAGAAGTCCATCTGTA GATCACTCATCAAATGATACATCAAAGGTACATATCGTATTCTATCATCATTAATAAGGACTTTTTTAGTTCCTGGATTT ACACGGATCTAGGAAGTTGATGACTCTATACCCTCTATGATTGAGAAGAAATAATATTGTTAGCCTTCTGTTACTAGAAG CTCCCATTACATGACATTTTCATATTTTTACGCATTAGGGCTTCCTGGAAAGATTTTAGTTTTTATATTATTGGGTGTAT ATTCATCAATTTCTTTGTCCTTTTTTATTGTTTCTCTTCAGATTTGGGTTCCATCAAATCCGAAAGGCGCAGAAAGATTA CCTCCTGGGATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGTGTGTATCCTAAA ACTGTTTATAGGTTCAATGTGGTAACAATCTCCAAATGTCCTAAGAAAAAACTTCTTATTTTTCATTTTTTTACATGGGG AGGAATGGAAGCTTAGATAGCTGTCCTTTTGCATGCGTGGAGCCGTGGAAATAATGTAGCTAAATACATATTAAGGGCCT TTTAAGTGTTATACGCTAGTTAGTGAAATTATCAAAAAAAGTCTTTGCATATATTTGTTAGGTAATTTACTTGTTAATGG GAAAGAAACATAATAAACCAAAGTGGATGCGGCATTTGACTAAGGTGGTACCTGCAGGATTTAACGTCCAAGCCAAAGTA CCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGGTCTTAGTCCCTTCCTCTC TCTGTTTGCACATGCTTATTTATGTGTCTTTTAACTAAAATTGCTTGAACAGTTCTCAGAGAACTTCACAATCCTTCTAT TTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTATTCATGTGAGTGCTCGTAAACAG ACCAAATGGTAAGAAAAAATGTGTTTTCTTAAATTTTGGATGGTAGATTTTTATTGTGGCTTTTTTCTGTTGATAGTGTT TACCTAATTTTAAAGTGGTTTGCTATTTCATTTTTGTTATCATATGATTCATATTGACCATTTAGTTGTTTTCCATCCTA GGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACTATATATTTATATGGGATGAAGACCTGGGC GTTGAGCATTTTAATGCAGAAGCGTGAGTATTTAATATGGGAGGGATACTTTCTAAAAGATTTTACTTTTATATTGAAGT TTCATATTACCCTCTTATTTCAAGTGCAGATACTTAAAACTAGTGAGGAAGCATGGCTTGGAGATTTCACAGCCTGGTCT GGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGAAGTCCACAAGTAAGAATGAACAGAGT CCTTTGCTAGTTTTCTTGAGGTTGATTTTATTTAAAACGATGTGCATTAACTGTTTATTTTCTTGGATTTCTATTAGAAT GACAGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTAAGTAACTGCTGATTATTAATGTT GTATTATCTAGTCCAAGGTTGTCAAAATCAATATCACTTTGGATTGGGAGGGGATTGAAAGATCATGATCAAAATCGTAG TACAGAATGTAACATCCTAACTATAAATGCAAAGTTATACACACACATGCATAATCGAAAACATAGATTAGGAAAAATAA CCTCTAAATCACAATAAACATTTAATTAAATTTCAATTGAAAATTCATAGTTTCATAAGTTACATAAGTTTTTGATAACA CATAAAACTAAAACATGAAAGAAAATCCAACTTCTTCAGTCTTCACCCACAGATAGACACCAGAGAGGCTTGAAATAGTG ACAAACAACAAAGACCAAAATGCTCAATTCTGTGACAAACAACAGATAGAGACTCCGGAACCTGCGAACCAGAGAGCCTT GGACCAGAAGTGTGAGGGAAGAACCAGATAGCAATTGGTTGGGAAAGATGGGTCTCAATTCTCGAAGATGTATTTATCGA AGATTGGGTGTAGGAACAATGAGGAGTTGAGGTCATGGAGCAGAGACAAGGGTTTCAACCTGGTCAGATGACCCAACCTG GGTTGTATGTTGGCTGCAAACTCATTCCAACACGCCAATCCTACTGTCTTACGTGTCTGCCTAGGGATCCTGAACAAGTC ATCTAGATAGAAATTTCTGGTGGGAACAAGATCTTATTGCAAGGGGAAACTTGTAGGAATGTGAAATCATATATCGACAC CTGATTTTAACAATGGTCTGGTCTACCAAGCTGGTAATACTGCAGTAAAATGGTAGAGTCCCGTCTTAAGTGGTTTGAAT GTGTGGAGAAGACTTGACGAACCACCGGGAAGGAGTAGACTTGATGGATTCCGGTATTTTGGAGTTGACTGAGAAAAACT ATTAACCAAACCATAAGATTTGGATATCAATTATCATTAGATTTGAATCATGACAAGGTTATTTCATCTTGTAGTCAAAA TCACATAGTGGAAAAAAGCTTTGGTTGTTGTTTGTCTGGTCTACATGTATCTAATTCACTGTGTTTTTCACTGTATATCA ATGCAGGTTTGTTGAGATTATGGCTCCAGTATTTTCACGTGATGCATGGCGTTGTGTGTGGCATATGATTCAGGTTGAAT GGTTACTCCTATTTGTTTTTAAAGATGAAAAATGGTCGGTTGTCTAGTGATATTTCAAGCACTTGATAAATTATAACAGT ACCACTCTTGTCATTGCAGAATGACTTGGTCCATGGGTGGGGTCTTGATTTTGCTCTTAGAAGATGTGTTGAGGTGAGTA CATTCAGGCATTTTTCTCAAATTATTTAATTTCTTGACTACTTACTTAAATAGTGTGGCCTTAGCCGAGCCACACCAAAG AAATGAAGAAAAAAGAGAAGTTTACAATCTACACATGCTATGTAGCTTTAACGATATTTTTTATTTTATATAGCCTGCTC ATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGGTGTTCCCACACTAGGGAATCAGGTAATTTGTTTA CCATGATTGTTCTTTTTATACTTGATAATTCTACATTAAAATGACGCTGTAAAATGCCTTATTAATTTTCCTGTTATTTG CAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTATGTTTTGCACGTTTCATGTTATGCAGCTTCATTTCATT ATGTATTATTCATTTTGATTACTTCCCATGTGAATGTGATTATCTGATATGGTATTTGGCTTCTGTTTCTCACATTCTAT TGAACTCATCAAGAATCTGTATTATGATGTAATCTAATGAACTTCAACTATGAAATTTGTTGATTTTTCCATCTTCTTGT TACCAGGTGAGGGAGAGGTGTAAAAAGGAGTGGACCATGTTCCAGAGTCGGTTGGCCTATGCAGAAAACGCGTACTTCAA GTCCATTGGAGTTGATCTTTCTAACTCCACTGCTCATTAG
CDS sequence (LotjaGi6g1v0094500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGATCAATACTCGCAGGTCTGATCATTGTCTTACTACCAGAAAACCAAGTGAAATTATGAGGCTCTTTGTGACAAC TTTTATTGGAGTGGTTTTCGGCTTCTTTATAGGAGTATCATTTCCCACATTGTCAATAACAAAGCTGAATCTTCCTTCTG GTCTGCTTCCCTCCATTGATCTCTCGTACCTTGAAGACAGATATACAAGTCGACATGCTTGGTCTTTTATAAATAAAAGT AACAGAAGTCCATCTGTAGATCACTCATCAAATGATACATCAAAGATTTGGGTTCCATCAAATCCGAAAGGCGCAGAAAG ATTACCTCCTGGGATTGTTGAACCTGAGACAGACTTTTATTTGCGTAGATTGTGGGGTAAGCCCAGTGAGGATTTAACGT CCAAGCCAAAGTACCTTGTAACCTTCACTGTTGGCTATGATCAAAAGCATAATATTGATGCAGCTGTGAAAAAGTTCTCA GAGAACTTCACAATCCTTCTATTTCATTATGATGGCCGAACCACTGAATGGGAAGAGTTTGAATGGTCAAAGAGGGCTAT TCATGTGAGTGCTCGTAAACAGACCAAATGGTGGTATGCCAAGCGGTTTCTGCACCCTGACATTGTGGCACCATATGACT ATATATTTATATGGGATGAAGACCTGGGCGTTGAGCATTTTAATGCAGAATGCAGATACTTAAAACTAGTGAGGAAGCAT GGCTTGGAGATTTCACAGCCTGGTCTGGAACCTAATAAAGGATTGACATGGCAAATGACAAAAAGAAGAGGTGATAGTGA AGTCCACAAAATGACAGAGGAGAAACCGGGATGGTGTTCTGATCCTCATTTGCCTCCTTGTGCAGCGTTTGTTGAGATTA TGGCTCCAGTATTTTCACGTGATGCATGGCGTTGTGTGTGGCATATGATTCAGAATGACTTGGTCCATGGGTGGGGTCTT GATTTTGCTCTTAGAAGATGTGTTGAGCCTGCTCATGAGAAGATTGGAGTTGTTGATTCTCAATGGATTGTTCACCAAGG TGTTCCCACACTAGGGAATCAGGGTGAATCGAAAACCGGTGGGAAACCATGGCAGGGGGTGAGGGAGAGGTGTAAAAAGG AGTGGACCATGTTCCAGAGTCGGTTGGCCTATGCAGAAAACGCGTACTTCAAGTCCATTGGAGTTGATCTTTCTAACTCC ACTGCTCATTAG
Protein sequence (LotjaGi6g1v0094500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGINTRRSDHCLTTRKPSEIMRLFVTTFIGVVFGFFIGVSFPTLSITKLNLPSGLLPSIDLSYLEDRYTSRHAWSFINKS NRSPSVDHSSNDTSKIWVPSNPKGAERLPPGIVEPETDFYLRRLWGKPSEDLTSKPKYLVTFTVGYDQKHNIDAAVKKFS ENFTILLFHYDGRTTEWEEFEWSKRAIHVSARKQTKWWYAKRFLHPDIVAPYDYIFIWDEDLGVEHFNAECRYLKLVRKH GLEISQPGLEPNKGLTWQMTKRRGDSEVHKMTEEKPGWCSDPHLPPCAAFVEIMAPVFSRDAWRCVWHMIQNDLVHGWGL DFALRRCVEPAHEKIGVVDSQWIVHQGVPTLGNQGESKTGGKPWQGVRERCKKEWTMFQSRLAYAENAYFKSIGVDLSNS TAH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 13 | 399 | 387 | 1.1E-225 | – | |
| PANTHER | 13 | 399 | 387 | 1.1E-225 | ||
| TMHMM | 20 | 42 | 23 | - | – | |
| Phobius | 20 | 41 | 22 | - | – | |
| Phobius | 42 | 403 | 362 | - | – | |
| Pfam | 100 | 387 | 288 | 3.7E-139 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0094500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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