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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0094900 |
Transcript ID | LotjaGi6g1v0094900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | 60S acidic ribosomal protein P3; TAIR: AT4G25890.1 60S acidic ribosomal protein family; Swiss-Prot: sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3; TrEMBL-Plants: tr|M5WI07|M5WI07_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0094900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:20485961..20488160) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAAAAAACAAACTAAAAGAGAAGAATACACGTGATTGGTAGTATAACACATCCTAAATAATTGCAGTTTCAGTTTGT ATTGGGGCAAAGCACGAGTTATAATGAGACACATAAAATTTATTGTGTTTTGAAAAGTGAAAATGAAGTGAAAAATGGTA AGTAATGATAACAATAAGAATAAAAGTAGGATGATGAAACGGACTATTCACCTATAGAAAAGCATTAGGGTTCTGCGTAA TAACAAATTAAACAGAAGAGTTCAACTTCAAACTACAAAAGCATTTCGGTGCGTGCTGTGCAGATCAGAGAGAAAGCGAT GGGAGTGTTCACATTTGTTCTCCGCAAATCCGGCAAGGAATGGAAGGCTAAGCAGTTTTCCGGCGACATTCAGGAATCGT CTCCGTCGACCTTCGAGATCCAAAGGAAGCTCGTTAAGGCTGTTCAAGCCACAGATTCCTCCGGTGCAGTTCGGACCTCT TACTCTCTTGTTTCCCCTTCATCTGCCGTTTTTCAGGTCCTCATTTTTCACCTTCACTCTTTATTATCATCATTTCCTTA TACATCTGGATCCCTTTGTTCATATTAGCGCTTTGGTGTATCTCAAGTTGGCTTCTATTATCTTTTGTTTTTCCCTTGGG ATTACGTTTTTCGTTATAATTGGGTTATTGCATGTGTTTTGATAATTTGTTTGATGAGGAGGGGATGGTGGACTTTTCTC TTATGTTAGACACTCGATGAATGAGAGTGGATCTGGATGGTACCACTTGAACCCACAGATAGTTTGATAAGCCATACATG TTTGATCCTATGGATTCGAGTCTCGCCGGTAGAGTTGGATTCATTTTGATGTAGATTTTTCCAACTCAAATATTATTGGA CACCTCATGTGGAGGATACTAGAATTTGGATCTTCCATGTGTTAATCTCACCTAACAATATAATGTCCATTGAAGTGAAA TTGAATCGTGATATTTTATCACATTTATGATGAAGTATTTATTGTATTTTTGATTGAGTATGTGTTTGTCACTTTAAACC AAAAAATGAGCGGATCTTTATTATAGATTGAGTTCAAAGACTATTTAACTGCAAGTTTGGAATGATATCCAAACACACTT AGTGCTGGGGGCATAATATAAAAGTTAATGCACTTCTATCCAAAGTTACACTATGTAGCTTCTTGCTATAATAAAAATAA CAATTACTAGTTTGTAAAAGCTAAACCAAGTACTCTACTATTGAAGGAATGCCATTCATCAATTTGGAGGTAGATTTTCA TTTTCAAACATCAATTGAGTGTGTTTGTTTCAAATTTTATTTGTTCATTTGTACCTAATTGGCCATTTATTGTATAATTT GAGCATCCTTGATACCTGAAAATAATAAAAGAACTGTCTAAATTGTTACTATACAAATCTTTGAAAATTAAATGGAAAAC AAAAATAATGTGACATATTTGTAATTAAAAGTAAAATAAGAAAAATAAAATACATAGCATTATGGCTGTTTGCTTAGAGC AATGAAACCAAAACCATGAAGACCTCACCTTACACTTCCAAACTTTTCCTCAACCTCCTTTCTTGATGGCTTATATATAT TTTTATTTTATTTAATCACAAGGTTGATCACTAATTAGCATCGGTTAATTGTTTTCCTCAGGTCATTGTGGGTGGAGCAG TCATTATTGGAGGTGGTGTAGCTGCTGCTCCTGCAGGAGGTGCTGCCCCAGCCAGTAACGCTGCCCCCGCTGCAGCGAAG AAAGAAGAAAAAGTTGAGGAAGAAGAGGAGGATGATGATTTGGGGTTGTCACTCTTTGACTAGAGGTTTTCCAGTTCTTT GATTTTTATGGAAGCATCTTTATTTTTTTGTTGGAGTCATGTATTGGTTTGCATTAGATTAACATAAACTCTTAGAACCG AGCCAATAAAAATACTAATTTAATGGTTTACTATGCCAAATCAATTTTTTTGGTTGGAGTCATGTATTCGTTAGCGGCCT CTACTTAGCCGTTAGCATGAACGTAGTAGGTGATGGTGATGAAGCAATCAATTGAATGTTTTTCGATTAGACATAATCCC ACATATGCTTTCCAATTGTTCTATCCATGAACATTGAGATGAGGTATAATACCTAAAATGTAAGGAACGTGATGTGAGAT TCCTAGAGAGAATGAGAGCGTAACCGCTTTAGAGAGAAAG
CDS sequence (LotjaGi6g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGTGTTCACATTTGTTCTCCGCAAATCCGGCAAGGAATGGAAGGCTAAGCAGTTTTCCGGCGACATTCAGGAATC GTCTCCGTCGACCTTCGAGATCCAAAGGAAGCTCGTTAAGGCTGTTCAAGCCACAGATTCCTCCGGTGCAGTTCGGACCT CTTACTCTCTTGTTTCCCCTTCATCTGCCGTTTTTCAGGTCATTGTGGGTGGAGCAGTCATTATTGGAGGTGGTGTAGCT GCTGCTCCTGCAGGAGGTGCTGCCCCAGCCAGTAACGCTGCCCCCGCTGCAGCGAAGAAAGAAGAAAAAGTTGAGGAAGA AGAGGAGGATGATGATTTGGGGTTGTCACTCTTTGACTAG
Protein sequence (LotjaGi6g1v0094900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGVFTFVLRKSGKEWKAKQFSGDIQESSPSTFEIQRKLVKAVQATDSSGAVRTSYSLVSPSSAVFQVIVGGAVIIGGGVA AAPAGGAAPASNAAPAAAKKEEKVEEEEEDDDLGLSLFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 119 | 119 | 1.4E-44 | – | |
Pfam | 37 | 118 | 82 | 9.0E-12 | – | |
MobiDBLite | 83 | 119 | 37 | - | – | |
MobiDBLite | 104 | 119 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0094900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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