Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF00428

Source: Pfam

Description

60s Acidic ribosomal protein

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 20

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0062259.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P2-4-like [Cicer arietinum] gi\|502122169\|ref\|XP_004497613.1\|	Domains IPR027534 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	11
Lj1g3v1063580.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P1-like [Cicer arietinum] gi\|502177934\|ref\|XP_004516146.1\|	Domains IPR027534 MF_01478 PF00428 PTHR21141 cd05831 mobidb-lite	6
Lj1g3v4703000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P2B-like [Cucumis sativus] gi\|449521190\|ref\|XP_004167613.1\|	Domains IPR027534 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	11
Lj1g3v5060560.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum] gi\|502114115\|ref\|XP_004494866.1\|	Domains IPR027534 MF_01478 PF00428 PTHR21141 cd05831 mobidb-lite	6
Lj2g3v1196740.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P2B-like [Cicer arietinum] gi\|502083624\|ref\|XP_004487515.1\|	Domains IPR027534 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF48 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	12
Lj2g3v3260030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P1-3-like [Cicer arietinum] gi\|502114115\|ref\|XP_004494866.1\|	Domains IPR027534 MF_01478 PF00428 PTHR21141 cd05831 mobidb-lite	6
Lj3g3v1145920.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P2B-like [Cicer arietinum] gi\|502083624\|ref\|XP_004487515.1\|	Domains IPR027534 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF48 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	12
Lj3g3v2985020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein PO [Euphorbia esula] gi\|6984134\|gb\|AAF34767.1\|AF227622_1	Domains CYTOPLASMIC_DOMAIN IPR001790 IPR030670 NON_CYTOPLASMIC_DOMAIN PF00428 PF00466 PIRSF039087 PTHR21141 PTHR21141:SF3 SSF160369 TMhelix TRANSMEMBRANE cd05795 mobidb-lite	14
Lj4g3v2728290.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: 60S acidic ribosomal protein P3-like [Glycine max] gi\|356525439\|ref\|XP_003531332.1\|	Domains PF00428 mobidb-lite	3
LotjaGi1g1v0079600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P0; TAIR: AT2G40010.1 Ribosomal protein L10 family protein; Swiss-Prot: sp\|P50346\|RLA0_SOYBN 60S acidic ribosomal protein P0; TrEMBL-Plants: tr\|I3SER8\|I3SER8_LOTJA 60S acidic ribosomal protein P0; Found in the gene: LotjaGi1g1v0079600	Domains CYTOPLASMIC_DOMAIN G3DSA:3.90.105.20 IPR001790 IPR030670 IPR040637 IPR043141 IPR043164 NON_CYTOPLASMIC_DOMAIN PF00428 PF00466 PF17777 PIRSF039087 PTHR45699 PTHR45699:SF5 SSF160369 TRANSMEMBRANE cd05795 mobidb-lite	18
LotjaGi1g1v0295700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P1, putative; TAIR: AT5G24510.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O23095\|RLA12_ARATH 60S acidic ribosomal protein P1-2; TrEMBL-Plants: tr\|A0A072VJD3\|A0A072VJD3_MEDTR 60S acidic ribosomal protein; Found in the gene: LotjaGi1g1v0295700	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 PF00428 PTHR45696 cd05831 mobidb-lite	8
LotjaGi1g1v0678000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P2; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O24415\|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr\|I3T179\|I3T179_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0678000	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF87 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi1g1v0796600.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P1; TAIR: AT5G24510.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|Q8LCW9\|RLA11_ARATH 60S acidic ribosomal protein P1-1; TrEMBL-Plants: tr\|I3SWN8\|I3SWN8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0796600	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 PF00428 PTHR45696 PTHR45696:SF16 cd05831 mobidb-lite	9
LotjaGi2g1v0286700.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|Q9LXM8\|RLA24_ARATH 60S acidic ribosomal protein P2-4; TrEMBL-Plants: tr\|I3SKJ7\|I3SKJ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0286700	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF89 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi2g1v0286700.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|Q9LXM8\|RLA24_ARATH 60S acidic ribosomal protein P2-4; TrEMBL-Plants: tr\|I3SKJ7\|I3SKJ7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0286700	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF89 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi2g1v0425400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O24415\|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr\|I3SVC6\|I3SVC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0425400	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF90 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi3g1v0174800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O24415\|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr\|A0A072VLF0\|A0A072VLF0_MEDTR 60S acidic ribosomal protein; Found in the gene: LotjaGi3g1v0174800	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF89 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi4g1v0392800_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P3; TAIR: AT4G25890.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|Q9SVZ6\|RLA31_ARATH 60S acidic ribosomal protein P3-1; TrEMBL-Plants: tr\|I3RZH7\|I3RZH7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0392800_LC	Domains PF00428 PTHR47207 mobidb-lite	4
LotjaGi5g1v0093000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein; TAIR: AT3G44590.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O24415\|RLA2B_MAIZE 60S acidic ribosomal protein P2B; TrEMBL-Plants: tr\|I3SVC6\|I3SVC6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0093000	Domains G3DSA:1.10.10.1410 IPR027534 IPR038716 MF_01478 NON_CYTOPLASMIC_DOMAIN PF00428 PTHR21141 PTHR21141:SF90 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION cd05833 mobidb-lite	14
LotjaGi6g1v0094900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	60S acidic ribosomal protein P3; TAIR: AT4G25890.1 60S acidic ribosomal protein family; Swiss-Prot: sp\|O24413\|RLA3_MAIZE 60S acidic ribosomal protein P3; TrEMBL-Plants: tr\|M5WI07\|M5WI07_PRUPE Uncharacterized protein; Found in the gene: LotjaGi6g1v0094900	Domains PF00428 PTHR47207 mobidb-lite	4

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	5.00