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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0097400 |
| Transcript ID | LotjaGi6g1v0097400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Photosystem II core complex proteins psbY; TAIR: AT1G67740.1 photosystem II BY; Swiss-Prot: sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, chloroplastic; TrEMBL-Plants: tr|I3T1P2|I3T1P2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0097400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21146920..21148754) extracted from Lotus japonicus Gifu genome v1.2.
AAAACAATGCAATGAATATGAGGTCGAAATTTCACCATTTGGATAAGAGAATCTAAAGATAGAGTGTTATTGGACCTCAA TCCTCATATTCCAAACTCCAATCAATAATAATAGCGAGGACCAAGTTTTCTTCTCTGGTTTCTGCTGCAGCCACCGCTTT GAGAATTCAATCAATTCCAGTTCTCACCTCAACCAACACACACAGCTTCACAAATGGCAGCAACCATAGCAACAATGGCC ATGATCAACTCCAAGTGCTTCACCACCAAGATGATCAACCCCACCAACACCAAACTCACAGCTTCAAAGCCCACCACCCT CTTCTCTTTTCAGAACCTGCCAAAGGGTCTGTCCTCAGCTGAAAACACCAGCGTCTCCACCACTTCCATGGCTGGCACCG CCATTGCTGGTGCCATTTTCTCGTCACTCGTAAGCTGTGACGCTGCCTTCGCCGCTCAGCAGATTGCTGAAATAGCGGAA GGTGATAACCGTGGCCTGGCTCTGTTGCTGCCTGTGATTCCAGCTATTGCTTGGGTGCTGTTCAACATTCTGCAGCCTGC ACTGAACCAAATCAACCGCATGCGTAACAGCAACGGGGTGATCGTTGGGCTTGGGCTCGGGCTTGGTGGGTTGGCAGCGG GCTCGGGGATGTTGTGGGCTCCGGAGGCGTCCGCCGGTGAGTTGGGTATGATTGCTGATGCCGCCGCAGGAGGCAGTGAT AACAGGGGACAGCTTCTGCTGTTTGTGGTTGCTCCGGCTATTGGTTGGGTGCTGTTTAACATCTTGCAGCCAGCTCTCAA CCAGATCAACAGGATGAGATCTGAGTGAATTTGCTCACTCTTATAAACTAGGGTATTTTGGTGCTGATTTTGTTGCATGG CTTTGCTTGTATCTAAACTCCCTATATAATGTTATGTATATCAAGGTTTCCTTCACTTAGTTCTCTGTCTTAGCCAGTAG ATGTAGATGTAGATGTTGGATTAAATAAAGCATATAATTAAGCAATGGATGAACTAAAATCATAAGATAATAAGCATTGT TAAAATTGAATAACTTGGAAGCTAGTCGACAATGTTTGTTAAACAAATGCTATGCTCAATTGTATTGAGGTATAAGAGGA TGCATGTTTGTAACGACTGCATAATCAAGATGCAACTTTCATTCTTTAGAGCTTGTATAACGTCATTGGGTTCAGCTTCA GAGATGAAAGCTTGATTGTTAATATATAGACTTCACCTGTTGAGATGGATCCCCAAGGATTTGATTGGGTGGATGATGTA CTTTATACTTCCATTTCTTAGGTAAGGGGATGTCTCCAAACGATTCGAACTGATCAGATGATTTGGGTTTGTTAGAAAAT GTTTGACAGAAAATCCTGGTTGATCTCACCGTCTTGGTTCTTCATCAGCTTCATTTGTTTGGTTCAAGTTCAAATCTATA ATCCTCATCTGTTATCATCAAATTCAACATAAGTGGTGATGGTGGAGGTTGTGGTGGTGGCGATGTTGGTTGTAGTGGCA GTCGTGATGGTAGTCACAATGACGATGGTGGTAATGGAACTGGCGACGGTGGTTGGTGTAAGATCAAGTTTTGATCGAGT AGTACAACTCTATGTTTTGATGATTACAAGTTAACATTTTAGTATGAACAATTATGGTACTCTAACGTGTTTTTCTGAGT ATGCTATTCAGGGACGGACCCACTCACACAATGGTGGGGGCAAATGACCCCACGTGGTTTACGGACTTTCTTTTAATACT AGTATGTATTTTTAAATTCTCTACAAAGTTGCCCCCATAACTTTTCCATTATATTGAAAATGCCCCCAAGTTACA
CDS sequence (LotjaGi6g1v0097400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGCAACCATAGCAACAATGGCCATGATCAACTCCAAGTGCTTCACCACCAAGATGATCAACCCCACCAACACCAA ACTCACAGCTTCAAAGCCCACCACCCTCTTCTCTTTTCAGAACCTGCCAAAGGGTCTGTCCTCAGCTGAAAACACCAGCG TCTCCACCACTTCCATGGCTGGCACCGCCATTGCTGGTGCCATTTTCTCGTCACTCGTAAGCTGTGACGCTGCCTTCGCC GCTCAGCAGATTGCTGAAATAGCGGAAGGTGATAACCGTGGCCTGGCTCTGTTGCTGCCTGTGATTCCAGCTATTGCTTG GGTGCTGTTCAACATTCTGCAGCCTGCACTGAACCAAATCAACCGCATGCGTAACAGCAACGGGGTGATCGTTGGGCTTG GGCTCGGGCTTGGTGGGTTGGCAGCGGGCTCGGGGATGTTGTGGGCTCCGGAGGCGTCCGCCGGTGAGTTGGGTATGATT GCTGATGCCGCCGCAGGAGGCAGTGATAACAGGGGACAGCTTCTGCTGTTTGTGGTTGCTCCGGCTATTGGTTGGGTGCT GTTTAACATCTTGCAGCCAGCTCTCAACCAGATCAACAGGATGAGATCTGAGTGA
Protein sequence (LotjaGi6g1v0097400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATIATMAMINSKCFTTKMINPTNTKLTASKPTTLFSFQNLPKGLSSAENTSVSTTSMAGTAIAGAIFSSLVSCDAAFA AQQIAEIAEGDNRGLALLLPVIPAIAWVLFNILQPALNQINRMRNSNGVIVGLGLGLGGLAAGSGMLWAPEASAGELGMI ADAAAGGSDNRGQLLLFVVAPAIGWVLFNILQPALNQINRMRSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 203 | 203 | 1.3E-79 | ||
| Phobius | 1 | 94 | 94 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Pfam | 91 | 123 | 33 | 2.9E-14 | ||
| Hamap | 91 | 125 | 35 | 10.922 | ||
| TMHMM | 95 | 117 | 23 | - | – | |
| Phobius | 95 | 117 | 23 | - | – | |
| Phobius | 118 | 128 | 11 | - | – | |
| Phobius | 129 | 149 | 21 | - | – | |
| TMHMM | 130 | 152 | 23 | - | – | |
| Phobius | 150 | 173 | 24 | - | – | |
| Pfam | 169 | 201 | 33 | 6.3E-12 | ||
| TMHMM | 172 | 191 | 20 | - | – | |
| Phobius | 174 | 195 | 22 | - | – | |
| Phobius | 196 | 204 | 9 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Photosystem II | A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center. | ||
| Biological process | Photosynthesis | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Manganese ion binding | Interacting selectively and non-covalently with manganese (Mn) ions. |
Expression pattern of LotjaGi6g1v0097400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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