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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0099500 |
| Transcript ID | LotjaGi6g1v0099500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AGAMOUS-like MADS-box protein; TAIR: AT1G65300.1 AGAMOUS-like 38; Swiss-Prot: sp|Q7XJK8|PHE2_ARATH MADS-box transcription factor PHERES 2; TrEMBL-Plants: tr|G7JY85|G7JY85_MEDTR MADS-box transcription factor family protein; Found in the gene: LotjaGi6g1v0099500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:21633979..21635033) extracted from Lotus japonicus Gifu genome v1.2.
CACCAATGATATTCGACCACTCACAAATTGTACCTTTCCAAGATTTCTTCTACTCGGTATATGTCTATTATTTTCTTATG TCTATTTTTATAATTAAAGTTGTTTTCTATACTCTTTTGATTTGATAGTATGAAATCAATATTTCAGAGCCAACTCAATG GTAGAAGCAAAGATTGAGATCTATAATCTTTGCTAGCAAGTACTAGATTAAAACAAAAAAATTTATCTTTTTCTTATTTC TGTTTAATTTTTTTGTAAAAATTAAGAGGTGAAGCTCATCCTTTACCTTTTGATGGACTCCTCATATTATTATTTGATGT TGTCGAGTTGCAATTGAATGGTAGAATTTTGGTCATTTTATTATGCTTCGATGTGAAGTTGGAACTAGTATTTTTAATTG TGGTTGCAGCTACATTTCTTAATTACATCTTATTTTTCTTCTTAATCGTGGCTAGATTTCAAATCTTTCCTTGTGGAATA TATCTAAATTTTTTCGATCTTGTGACATATTAATATAGATTATTTTATTTTCATTTGTAGCCATGACGAAAGTGGAACTT TCTTATATCTCTAATGTCACAGCAAGGAAAGCAACCTTTAAGAAAAGGAAGAAAGGTATCCTGAAGAAGGTGAGAGAACT CACCATTCTTTGCGGGATTCAAGCATGTCTTATAGTTTTCAACCCTTTTAAATCTGAGGTAGAGGTTTGGCCGAATCCAG AGGGAGTTAGGCAAGTGATTAAGAAGTATCAAAATGCATCTGTAATAGATCAAACAAAGAATGTAAACCAAGAGAGCTTT ATCATGCAAAGAATTACCAAAGCTCGTGACCAATTGAAAAAGTTGCGTCAGGAGAATCGTGAGAAGGAGCTGACCATAGA TATGTTCAAATATATGAAAGAAAAAAACTTGCCAGACAAGCTGAATGTTGAAGAAGTGAAAGAAATCAATGAGTTGATCG AGAAAAAACGTAAAGATATTGAAAAATAGATAACCATACTCGATTGATCAAGTGTATTGCATTATGTCATATGATCTTCA TATTGTATGTTTGTG
CDS sequence (LotjaGi6g1v0099500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAAAGTGGAACTTTCTTATATCTCTAATGTCACAGCAAGGAAAGCAACCTTTAAGAAAAGGAAGAAAGGTATCCT GAAGAAGGTGAGAGAACTCACCATTCTTTGCGGGATTCAAGCATGTCTTATAGTTTTCAACCCTTTTAAATCTGAGGTAG AGGTTTGGCCGAATCCAGAGGGAGTTAGGCAAGTGATTAAGAAGTATCAAAATGCATCTGTAATAGATCAAACAAAGAAT GTAAACCAAGAGAGCTTTATCATGCAAAGAATTACCAAAGCTCGTGACCAATTGAAAAAGTTGCGTCAGGAGAATCGTGA GAAGGAGCTGACCATAGATATGTTCAAATATATGAAAGAAAAAAACTTGCCAGACAAGCTGAATGTTGAAGAAGTGAAAG AAATCAATGAGTTGATCGAGAAAAAACGTAAAGATATTGAAAAATAG
Protein sequence (LotjaGi6g1v0099500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTKVELSYISNVTARKATFKKRKKGILKKVRELTILCGIQACLIVFNPFKSEVEVWPNPEGVRQVIKKYQNASVIDQTKN VNQESFIMQRITKARDQLKKLRQENREKELTIDMFKYMKEKNLPDKLNVEEVKEINELIEKKRKDIEK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 29 | 29 | - | – | |
| ProSiteProfiles | 1 | 47 | 47 | 16.96 | ||
| SMART | 1 | 58 | 58 | 4.1E-18 | ||
| PRINTS | 1 | 21 | 21 | 1.8E-10 | ||
| SUPERFAMILY | 2 | 84 | 83 | 2.35E-23 | ||
| PANTHER | 3 | 147 | 145 | 3.8E-45 | – | |
| PANTHER | 3 | 147 | 145 | 3.8E-45 | – | |
| Pfam | 9 | 48 | 40 | 1.5E-16 | ||
| Gene3D | 12 | 95 | 84 | 5.0E-15 | ||
| PRINTS | 21 | 36 | 16 | 1.8E-10 | ||
| Phobius | 30 | 49 | 20 | - | – | |
| PRINTS | 36 | 57 | 22 | 1.8E-10 | ||
| Phobius | 50 | 148 | 99 | - | – | |
| Coils | 84 | 111 | 28 | - | – | |
| Coils | 129 | 148 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi6g1v0099500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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