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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0101800 |
| Transcript ID | LotjaGi6g1v0101800.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transport factor 2; TAIR: AT1G27970.1 nuclear transport factor 2B; Swiss-Prot: sp|Q9C7F5|NTF2_ARATH Nuclear transport factor 2; TrEMBL-Plants: tr|A0A072TT57|A0A072TT57_MEDTR Nuclear transport factor 2; Found in the gene: LotjaGi6g1v0101800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22374185..22377153) extracted from Lotus japonicus Gifu genome v1.2.
TGCAGATCACACATTTATGAAACATCAGGGGCCCAAAATGGAATTAAGCCTTATTATTATTATTATTCGTGCGTGAGAGT GAAGCGAAGCGGAAGAATAAGAAGGGTCCCCTCCCGGGTGCGGCGCAGTGTGTGAGTGAAAGAAGAAGAAGAAGAAGAAG AAGAAGAAGAAGAGGGAAATAAAAATGGATCCAGACGCGTTAGCAAAGGCATTCGTGGAGCACTATTACTCAACCTTCGA TTCCAACCGTGCTGCTCTTGCTAATCTCTATCAGGAAGGTTCCATGCTCTCTTTCGAAGGTCAAAAGATTCAAGGTTCTT CAAACATCGTCGCTAAACTCACCTCTCTCCCTTTCCAACAGTGTCATCATTCCATCACCACCGTCGATTGCCAACCCTCC GGCGCCACCTCCGCCATGCTCGTCTTCGTCAGCGGTAACCTCCAACTCGCCGGTGAACAACACGCCCTCAACTTCAGCCA GGTAGGGTTTCGTTTTGGGAGGGACTTGTAAATTTTAGTAGCTTCCTTTTATTAGATCTGTTTTGCTTTCAATCAACATT TATTCCATGGAGAATCCGATTTTTCTATTTCGTAGGCGGCGGCGGCTGCCGATAAATTGATGTTTGATTTTGATTTTGAT TTTGATTCCGATCTGTGTTGCCGGTGCTGAGGGAAAAAAATGTATTATCTGTGATTTGTGTCCCCGAAGGTTAGCTCAAG TGGTAAGAGCTACATGACATAAGAATTAGGGGGAATGAAGGGTCCAGGGTTCCAACCTCATAAGAATTAGGGGGAATGAA GGGTGAAGGGTTCGAACCCTGAGGAGTGAATAATTTACTAATATTACTAACAACTAACATTTGTCTATAAAAAAAATTAT TCTGTGATTTGTTTTCACCAAAAAATCTGGGTTCTTGGGTGGGCGGGTGTGCCTTTAGTATATTGTTGAAAAATCTTAGT ATGCTGATACGTGTCGACTGAAGACTGTTTATTAAGGTACTCCAACCTAAAGGGAAATTAAATTGAATTAGCTGTCAATT TGTACCCTGGACATAGTTGAATCCTTAAACTGGAAGATGATACTTTGCGTGTAGACATCAATATCTGAGATTAAGGAATG GATATTAGATAGAGTAAGAACTAAGAAGGTGAAATTATGAAATACTTACTGGATTTTTCTTGCATGAACACTACCAATCA GAAGTTTAGAAAATATTAAAACAGTTCTTTGCACAACTTTTGATCTTCACTGTATTATTATTTAATATATTCCTAGGTTC TAATTGGTTGTATCTGCATACACTAGTGTTCATGCAAGAATCACTCTAAGTGCATATACTGCCAATCACGAGAAGAGTAA ATGGTCTGTGTGGTTTTGCAAAGGAAATTTTGGGGTTAATGCCACTAATCCAAGATTAGAGTGATTGCTGTTATGTTCCA ATTTTGAGAGTTTTATGGTATTAGCAATGATTTTTTATACAACTAAAGAAAAGATTGTTTTGATTACAGAGATTGATAGA CCTCATATTGGGCTTCCTACTTCCACTGATAGATCAGCTTCAAAATCGAATAATTGAAGGCTTTTATCTAGTTTTATTAT ATTTTGTTTGATTATGCTATTGTTAAACTTTTAATTCTAGAATGTTCCCTTTAATTATATGGTACCATGTGTAGGGAGAT CTCTCTTGGTAACTATATATATTGTATCTTCTGTTATGAGAAAGGTTAACAAGAAATTGATCAAAGTCTTTCTTTTCTAT TTTTTTTTCTTAGTTCAGATTTTAGGGTTCTTAGTGTTCTCTCTTGATAGGAATTAGCTTCCTATTAGAGATATAGAGGA GTGAAGGACATTATATGATTTTGGAAATGCTATTTATCATTTCCCAGATAGAACAGGAATTGTTTGCTTTAGAGGCATCA ATGTCACTTCATCAATATGATTTCTTCCTTGTTTTATTTTATTTTCCCTTCTACTAATTACCTCATTTCTATTGTAATTG ATGAAATGACTAAACATATTATTGTTTTCTGTTCTCAGATGTTCCATTTGATGCCAACACAGCAGGGAAGCTATTATGTG TTGAATGACATATTCCGTTTGAACTATGCATGATAATAGACCGTAGAGTGTGTGACATTGAAGGCCATAGAAATTTGCCT ACAGTTATTTTCACTTCAGACATTGGAAATTGACAATGGTTTCTTTTTGGTTCGTGTTGAACGCTTAATTGTACCTCTTC TGTTTAATATTCTGTTATATGATTGGTTTGAACTTTAAACGCATTCATAGATTAGTTGCTCAAGTTAATTGGATGTTGAG ATCATATCGTACAAATTTACCTCTAAATTTTTTTCCATGCATGTCTTTTTATTTATTATACTTGTGGATGGAATTTAGTG TGTCCACCGTTAACGCTTATTGGGGTTCCGTGGTCAAGAGAATTCAAGATCTTGCTTGTAATTTCCAAGCCATTATGTTT TTTCATGTTAGCATATGTGCTCAATTGCTTTTTAGGTACTCCTTGTCCTCCTCTGTTGAAGTTTGGATTGGATTAGGGAT TGGATGTACTCCTCTTAATCTTATGTTCTTTCGGACTCTTGCTGCCGGCAACTTATAATTGGAAGCTCAAATTTTCCATA AAAAATGACGTATTTTCTCTTCTCTTGGTAATGAAATCTATGCACGATTTATGTTGGCATTAAGATATTAAATCAGTATT ATTACCAGTAAATAAGTTAACCGATGATCACTGTATGTGACTCGCTTGTGATGACCATGGTTGTCAGCTAATGATTGCGA TGAAATGCACTCAGCATCCTTAAACACATTAGCAGCAAATAAGAAGTTCAATTAGATGCCATACTAGTTTTGTAGACTTG AATAAAACTGTCTTTTCTGAAAAAAAAATGGTGCTTCACATTATTCAGCATGTATTACCCGTTGATAACTGAGTTACTGT CTATTATGC
CDS sequence (LotjaGi6g1v0101800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAGACGCGTTAGCAAAGGCATTCGTGGAGCACTATTACTCAACCTTCGATTCCAACCGTGCTGCTCTTGCTAA TCTCTATCAGGAAGGTTCCATGCTCTCTTTCGAAGGTCAAAAGATTCAAGGTTCTTCAAACATCGTCGCTAAACTCACCT CTCTCCCTTTCCAACAGTGTCATCATTCCATCACCACCGTCGATTGCCAACCCTCCGGCGCCACCTCCGCCATGCTCGTC TTCGTCAGCGGTAACCTCCAACTCGCCGGTGAACAACACGCCCTCAACTTCAGCCAGATGTTCCATTTGATGCCAACACA GCAGGGAAGCTATTATGTGTTGAATGACATATTCCGTTTGAACTATGCATGA
Protein sequence (LotjaGi6g1v0101800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPDALAKAFVEHYYSTFDSNRAALANLYQEGSMLSFEGQKIQGSSNIVAKLTSLPFQQCHHSITTVDCQPSGATSAMLV FVSGNLQLAGEQHALNFSQMFHLMPTQQGSYYVLNDIFRLNYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 123 | 123 | 2.9E-43 | – | |
| PANTHER | 1 | 123 | 123 | 1.7E-74 | – | |
| PANTHER | 1 | 123 | 123 | 1.7E-74 | – | |
| CDD | 2 | 122 | 121 | 1.13781E-46 | ||
| SUPERFAMILY | 3 | 121 | 119 | 2.05E-39 | ||
| ProSiteProfiles | 6 | 120 | 115 | 34.227 | ||
| Pfam | 7 | 120 | 114 | 2.5E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0101800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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