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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0102200 |
| Transcript ID | LotjaGi6g1v0102200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein, putative; TAIR: AT1G27290.1 transmembrane protein; Swiss-Prot: sp|Q7YRL5|TNR5_CANLF Tumor necrosis factor receptor superfamily member 5; TrEMBL-Plants: tr|C6T2V5|C6T2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0102200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:22438604..22442062) extracted from Lotus japonicus Gifu genome v1.2.
CAAAGTAGAAAACGTGCATTAAGACGCGCTGCGGTGGCAACGTGTAGCAATCTCATCCGATTGCTTGCTTCCGGATAAAG CAACCTCTTTCCTGCGTGGCATTCTCACCCAAATCAGTTTTCCTTTTAATCACATCCAATTCCTAATAAAACATCCTTGT TATTGCTGTTCAACGCAGCAGCAATTACCACCATTTCTCTCTTTCTTTCAAGTTTCAATCATTCAACAAGTCACAATTTG TTTGTTTCTTTGAATCCATTATATACCCTTTTTCTTTTCTCTAAGGTCAAGCTACCTGCAGACGCAGACAAATCTGAAAA GAAAAAATAAATTTCTAACATTATCCATTTGCCTCGGTTCTAGCAATTGCAAATTGCAATACCCACCTTCTTTTTATTAT TTCCACCATCTTTTTTCTTTTTTTTATGAATAAAACAGATTTTGAAACGAAAAGTTTACAAGAGAGGAAGATGGGGAGAA GACACGAAGATGAACAATCAAGGGCTCTCTACGAGCTCTCTGCTCTCGTTCTCAACCTCCTCCGTTCTCCTCCTACGCCG TTAACTTTCTCCGATAATCCGGCGGCGGCGCCTTCACGGTGTTCGCCTCAGCCTCAGATCTCGCCGTCGGGTTTCGCCTC CCTGCTCCTGGGAATCTCGCTGGCTCTGATGCTCTGCGGGTCGGTTACGTTCTTCATCGGGTTCATGCTGATGCCGTGGG TTCTGGGTTTGGTGATGGTGTTCTACGTCGCCGGAATCGTTTCCTCTCTCACCTTCGTTGGGCGCTCCATTCTCTACTAT GCCACGGCGCCGCCCAAGGATATTCCCGGTAAGTGAAAAAAATGAGGAATTTTGTTGTGTTAATGGTTAAATTAGTCTAT GTATTTGTAAGCGAGTTTGATTTTAATATATAAAAATGACGTTTAGTGGCGGTCATAAAATGTAAGTAATTGTAAAAATG ACCGTCATTTTTTCTGATAGAGACTAAAATTAAACTCGTTTACAAACCTTTTTTTATTTTGTTAATTGTTACTGTAAATG GAAAGTCAATTTTTGTTTCCAATTGAGCGTGTTCAAATTTTTCTTCTTTTAATAGAACTTATATTAAGAGTGAATTTACT TTAGAGATAAATTTGGGGTAGTTTGCGAGGTAGAAAACAATGGAAGTGTTTTGTCTTGAATAGTTTGGAAAATTTGGTTG TGCAACGGAAACTTGTGTGTTTGTTTGTGTTGACGTTTGCAGTGAAGAGGAGATTTGGAAATCAGCCGCAAAGGCGGCTG GTGGTTCCTTAACGCTGCCTCAGCCTAGCAATTGTGGTCATCCTCATATAGTAGGGGCAGCAATTAAGCAAACATGTTTA CTGTTTAGCATCAATTGTAGAGGACTTTTATGCACTTAGTGGATGGGAAACCCCGAATCAATTCTGGTAGACTATAATCT ATTCTTGATGAAAATATTGATGTTTGGACTTCATTTTGTAGATTTGATTTAATAATGTAATCAATTATGGTAGAAGCTAA ATAGTTGTAGCTTCTGTGTTAAACATAATCAATTGTGAGATTTTGCGATTGGATTTCACAACATTAACCAACAAAAATCA CATTTTCATTGATGTTGTGAAATTTGACTTGATGGACACTAATTTGCCTGTTTTGGGTTCACCCTTTTGGTGTATTAATT TGACTTGATGGACACTAATCTCTGATTGTATTTGTATCACTCATATGGCGTTCTCATATGAAATTTACTATTATTCCTGG TATCATGAGCCTGAGTGGCTTAATTCAGTTTTTTTTCTTCTTGTTACAGCGTGGAAGCTTATGTGAAGTAACATGTAAAG AAAGAAATTGAGGAGTACAATGTTAAGTGCAGTGCTGCCTAATGCAAACTATACAACATTGAAGAGTACGGAACTTCTCC ACTTATTAGATGCAGGAATTCTGGATAGGTGGCCTTTTTAAGAGTGTGTTTGTCTCATTCAGATAAACAAATACACTCAT TTTTGTGGATATGTTTTTGTTCACTAGAAATAGGTAAGGCCCTTCTTCTGTTATTTTTCCTTTTGTTCAGTTCTAAACAG GGCATATACTATAGAAAGAGAAGGAAAATATGATTTGATTCCTGAGGCAGCTGATGGCTGTGTTTTGTCGATGGCAGCTG ATATTATTTATTTGCATATTAGTACTGCTATTGGAGGTCGTTGATATGGGTTATTGTCACTTTTATCTACTGTCACTATT TTTATCATATTTTTTTCTTATTTATTTGTCACTTTTACAATTTTAAGAGCGTATTAATTATTTTTTTCTAATCGCACTTA TTTATTTGTCACTTTTACAATTTTAAGAGCGTATTAATTATTTTTTTCTAATCGCACCTTTAACTTAATTGTGGTATGAA AATTAAAGAGTAAGAACTTTTTTTTTGAAAGTAAAGAGTAAGAACTAATAAGAGAGATAAATAGTGTATTAGGGAGTAAT TTTGATAAAACAAGAACATCAAATATTCACTTTGAAGAGTGTGGGTGTACTGAGTTCATGGGATGGTTGAGAGTGAAGTC TATTTGTTGTAACAGTTTTCACATAGTGTTTATTCTCTAGTTGTCGGTTTTGACAATGGTCGTAGTTTTTTCTCCAGTTT TGGTGTTTTCACGTTATATTCTTCTGTTGTTGATTGCGTTCCTGATTTATTTTACTGCTTTATTTTACTTCTTCATCTAA CAGTTCCTTTCCTCTACGCTGACATAAACTGCTACCCCCAACTTAATTGAGAAAAAAATCCTAACACATCCAAAATTAAA TGGAATAGAAGTCCATGCTGCTAACTCAGGTCCACATTGAAAGAATCCTGCATAATAAAACATCAATCTATCAATACCTA TTTCTCCTATAGTATAATTTCCAGTTACAGGGATTATTTTGAAACTCCCTTCCTAATAGCGCCTCAAGACAAGGTTCAGG TTCCACTCATAAAAAGAGAAGCTAAAGCCCCTTGATTTCGCTGTGAGCCACATCTAGGATCGGTATTGAACTAATTTTAC TATTCTGAGTGCATCAAACCCCGTTCTAAAAAAATCACTGAATTTCTTGCACACCAAATGCACCAGATAGCTGCAATCCA TATTATCCATGCCCCTCCCCTCTTCCTAGAGTTACCGCATGATTGGAAGTGCGGTAAGAAATTGGCTTGGCAACACAGTG ACCAAACAACACCACCGATGGAGCTCGGGCAAGTGCCACCTACGGCAACACAACGGCCAACACAGCATGCAGCCCAAATG CCACCTGGCCACGGAGCCCCGACAAGTGCCCAGGTAGGCCGAGCCTTGGCTCCGCCACTGTTCGAGGGTTATCTTAGAGA CCCCATCCTGACATGACTGACAAGAGAGTACCATGGAGATTATCATCTTGCTACCTTTCCTCGCCGTACTTTCACCATTT TTCTTCAATTCAGTGGCGG
CDS sequence (LotjaGi6g1v0102200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAAAACAGATTTTGAAACGAAAAGTTTACAAGAGAGGAAGATGGGGAGAAGACACGAAGATGAACAATCAAGGGC TCTCTACGAGCTCTCTGCTCTCGTTCTCAACCTCCTCCGTTCTCCTCCTACGCCGTTAACTTTCTCCGATAATCCGGCGG CGGCGCCTTCACGGTGTTCGCCTCAGCCTCAGATCTCGCCGTCGGGTTTCGCCTCCCTGCTCCTGGGAATCTCGCTGGCT CTGATGCTCTGCGGGTCGGTTACGTTCTTCATCGGGTTCATGCTGATGCCGTGGGTTCTGGGTTTGGTGATGGTGTTCTA CGTCGCCGGAATCGTTTCCTCTCTCACCTTCGTTGGGCGCTCCATTCTCTACTATGCCACGGCGCCGCCCAAGGATATTC CCGCGTGGAAGCTTATGTGA
Protein sequence (LotjaGi6g1v0102200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNKTDFETKSLQERKMGRRHEDEQSRALYELSALVLNLLRSPPTPLTFSDNPAAAPSRCSPQPQISPSGFASLLLGISLA LMLCGSVTFFIGFMLMPWVLGLVMVFYVAGIVSSLTFVGRSILYYATAPPKDIPAWKLM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 69 | 69 | - | – | |
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 17 | 139 | 123 | 1.6E-63 | – | |
| PANTHER | 17 | 139 | 123 | 1.6E-63 | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 70 | 92 | 23 | - | – | |
| Phobius | 93 | 97 | 5 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 98 | 118 | 21 | - | – | |
| Phobius | 119 | 139 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0102200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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