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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0108300 |
| Transcript ID | LotjaGi6g1v0108300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-directed DNA polymerase (reverse transcriptase)-related family protein; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151R2K2|A0A151R2K2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0108300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:24645077..24646621) extracted from Lotus japonicus Gifu genome v1.2.
TTATTCAAACTTCCATAAAATCGTTCCAAATTGAACTTAGGGCCTTACAGCTTCCATCTTGGAAATGGGAAGGTGGGTTG GTGATGCATGGGTTTGGGATTTTAAATGGGAGAGGGTGCTGCTGGATAGGGAATTGCAGAGGGTGTTAGAGTTGGAAAGG AAGACTGGAGGTTTTTCCCCTAAATTGGGCCAACGGGACAAATGGGTTTGGGTGAAGGATGGGTCAGGAGTGTATAGTGT GAAGTCAGCGTATGCTCTAATTCATGATGATTCTGTTGCAGAAGATAGCTGGGTTTTTAACAAGCTTTGGAAAGCAAAAG CACCTTCTGGCTTGATTGCTCTGGCTTGGAGGGTTTTGATTGATAAAGTGCAGACTAGATATGATCTTAGCAAGAGGAAT GCTCTTCCAGTTAACGTTACTACTATTTGTGTCCTATGCGCTTCTGATGCGGAAAATAGCTTTCATCTCTTTTTTAATTG CCATGTCTCGTGGAGAGTTTGGTCTAAGTTGCTTGACTGGTTGGGGATCCAATTTGTATTGCCATCATGTGCTGTAAACC ATTTCAGTCAATTCTGTGGTGTGTTGAGGGGAGGAAAAAAGGTTTCGCAGGCTCTTATCTTGATCTGGATTGCTGCTGTT CATTCGATTTGGCAGTGTAGAAATGGTTTAATTTTCAGGGGGGTTTCAGTGGAAATTGGCAGCCTAGTGGATCTGGTGCA ATACAAGGTTTGGCTGTGGTTATCTTCGCATGAAAGGAGCTTTTCCGCTTCTGTTTTTGAGTGGATTTCGAACCCTGCAA TCTGTATTTTTTCCTTATACTAAGTGGCAGCAGCTGGTGATTTTCTATGTTGGATTGTGTGTTTGCTTGAAGGGAAGTAC TTTAATCTTTCTAGTGACAGATTTTCTATGTTGGTTTGTGTGTATGATGAATCATGTTTTGCTGTGGCCGTTTGCCTTGG CTGGGAGAATAATTATTATCTTATTGTTTCTGTATGGCATTGGTTTTCATCAGATGAAGGTTAGTAGGTGCACTATATCT ATTAGTGGGAAATATATATTGAAGGGTATTAGATGGTTTGGTCTTGTCTTGTCTGTGATAGCATGTGGAGTGCAGGGAAT TGTGTTTCTCGTGAGCTCTATGTGTGGAAATTTGCTGGTGGAGTTATTTGATGGATTGGTCATACTACTGCTCATTTCTC TTTGGCTTATTCGTTGGAGCTGCTCCTCTTCATGGTTCTGTTGTTGGGTTTGGGTGGGTGTTTAGATTTCCTTGTAAACT TCCTTGAAAATTCCTCTTGGCTTTTTAAAACTAGTACTCTTTTTCCTTGCTGGGTTTTCCCAAGGGGGTTTTATCCTAGC AAGGTTTTAATGAGGCTTGTTTTATTAAGCCCATTTTCAAGGAGGTATTAGGTGGGTAGTTTCTCCATTTCTAGGGTCTT CGATTTTGTTTATGTTTGTGTTTGCTTATTTTTTCTTTTTTTTCTCCTCTCTTCTTTCACTTTGTATTGGGTTGAAGTAC CCCTTGTACTTCTATTCAATATATT
CDS sequence (LotjaGi6g1v0108300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAGGTGGGTTGGTGATGCATGGGTTTGGGATTTTAAATGGGAGAGGGTGCTGCTGGATAGGGAATTGCAGAGGGT GTTAGAGTTGGAAAGGAAGACTGGAGGTTTTTCCCCTAAATTGGGCCAACGGGACAAATGGGTTTGGGTGAAGGATGGGT CAGGAGTGTATAGTGTGAAGTCAGCGTATGCTCTAATTCATGATGATTCTGTTGCAGAAGATAGCTGGGTTTTTAACAAG CTTTGGAAAGCAAAAGCACCTTCTGGCTTGATTGCTCTGGCTTGGAGGGTTTTGATTGATAAAGTGCAGACTAGATATGA TCTTAGCAAGAGGAATGCTCTTCCAGTTAACGTTACTACTATTTGTGTCCTATGCGCTTCTGATGCGGAAAATAGCTTTC ATCTCTTTTTTAATTGCCATGTCTCGTGGAGAGTTTGGTCTAAGTTGCTTGACTGGTTGGGGATCCAATTTGTATTGCCA TCATGTGCTGTAAACCATTTCAGTCAATTCTGTGGTGTGTTGAGGGGAGGAAAAAAGGTTTCGCAGGCTCTTATCTTGAT CTGGATTGCTGCTGTTCATTCGATTTGGCAGTGTAGAAATGGTTTAATTTTCAGGGGGGTTTCAGTGGAAATTGGCAGCC TAGTGGATCTGGTGCAATACAAGGTTTGGCTGTGGTTATCTTCGCATGAAAGGAGCTTTTCCGCTTCTGTTTTTGAGTGG ATTTCGAACCCTGCAATCTGTATTTTTTCCTTATACTAA
Protein sequence (LotjaGi6g1v0108300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRWVGDAWVWDFKWERVLLDRELQRVLELERKTGGFSPKLGQRDKWVWVKDGSGVYSVKSAYALIHDDSVAEDSWVFNK LWKAKAPSGLIALAWRVLIDKVQTRYDLSKRNALPVNVTTICVLCASDAENSFHLFFNCHVSWRVWSKLLDWLGIQFVLP SCAVNHFSQFCGVLRGGKKVSQALILIWIAAVHSIWQCRNGLIFRGVSVEIGSLVDLVQYKVWLWLSSHERSFSASVFEW ISNPAICIFSLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 248 | 240 | 6.8E-29 | – | |
| PANTHER | 9 | 248 | 240 | 6.8E-29 | – | |
| Pfam | 57 | 146 | 90 | 6.2E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi6g1v0108300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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