Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0108900 |
| Transcript ID | LotjaGi6g1v0108900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Methyltransferase; TAIR: AT5G01710.1 methyltransferase; Swiss-Prot: sp|A0RPY4|CMOA_CAMFF Carboxy-S-adenosyl-L-methionine synthase; TrEMBL-Plants: tr|G7IWX3|G7IWX3_MEDTR Methyltransferase; Found in the gene: LotjaGi6g1v0108900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:24748416..24750145) extracted from Lotus japonicus Gifu genome v1.2.
CCTCTGTTTCTTTCTTTCCACTGGTTTCCTCGCGCCGATTCATGGAGCCACCCGCTGCAAAACACGGCTTCTGGAGAAAC ATTGTGGTTCGTCTTTTCTCCTTCGCCGTCATCATCTTCGCCGTGAGATTCGCCATCATCACCGCCGTCCAGGGCGGATC TTGCGTCTCATCCGATTTCTGTTTCTTCTCCGACAAACCCAACATCCCCGCTCACGTCTCCGGCGACCTCTATTGGCGCC GCTCCGTCGAGTACTACGCCGCCGTTTTCCAGGACCTGATCGCCGAGGGTTCCCTTTCCCCCAATTCAAGAATTCTCTGT GTCGACACACCCACCGGCGACGACGTCCTCGCGCTGGAACAGCTCGGCGTCGTCGATTCCGTCGGGATCTTCAAGAAACC GTCGCCGCCGCTGATTGTCCAAGGAGAGGCTCACCGGCATCCGTTTCCTGACGATGCATTCGACTTTGAATTCTCAGGCA GCGGCGGCCTGGAAAGGTCACGGATGCCGGCGGAGTTCGCCGCCGAGATCGGCCGGACTCTTCGGCCGGGTGGGATCCTA GCGGTTCACACGGCGGCGAGAGACGCTTACAGTTTCAATTCTTTCCTTGAATTGTTCAATTGCTGTGAATTGATCAGGAC CCGAGACATCAACGGTGTTGATTCATCTCCTCCGGTTCTTGAGATTTTGATGAAGAAGAAAATGCATGAATTTCAAACCC TAGATTCATCCAATTCCATCAGTAAATGCTCTGTTCCAGGTTATAAACGTGAAATAGTAAAAAATGCAGAGGCATTGATA GTGGAAGAACCATTGAAACCTTGGATTACACTGAAGAGGAATTTGAAGAATGTGAAGTACCTAACTTCATTGGTTGACAT AAGCTTTAAGAATAGGTATGTGTATGTTGATGTTGGAGCTAGGAGCTATGGTTCCAGCATAGGAAGCTGGTTCAGGAAAC AGTACCCAAAACAGAACAGAACCTTTGAGGTTTATGCAATTGAAGCTGATAAGACATTTCATGAACAGTATAAGACAAGG AAAGGGGTCAGTTTGTTGCCCTATGCAGCTTGGGTGAGGAATGAGACCTTGTTCTTTGAGATTACCAGAGACCCAAGTGA GAAAGTGATGATGAAAGGTAGAGGGATGGGGAGGATCAACCCTGTGCAAACCTCTTCTAGCCATATGGGTGACAAGGATA AGATTCAGGGTTTTGATTTTGCTGAGTGGTTGAAGAGTGCTGTAACAAGTAGGGATTTTGTGGTTATGAAGATGGATGTG GAAGGGACTGAGTTCCATTTGATTCCAAGATTGATTCAAACTGGGGCTATCTGTTTGATTGATGAACTGTTCCTTGAATG CCATTACAATAGGTGGCAGAGATGCTGCCCTGGTCAGAGAAGTCCTAAGTATCAGAAGACCTATTCTGAATGCCTGGATT TGTTCACTTCACTCAGAAATATTGGAGTTCTTGTACATCAATGGTGGTGACAGTCCAGAAGAAACTTCCCTGTAGTTCTT TTTTCTGCTATTCTTACAATTTTGGTATAGGTTAGATATTATTTTTATTGCACTTCTCCACAGCATAGCATAGGAATTTA TACAACTAGATTGATTCATTGATTCCTTTATCAGATTCTTTTTTTGTTAATTGTCATCCATGCAAATGAAGAGTTGAATG AAAGGAAGATTTTGTTTGCAAACCATTCTTTTACTTCATTTATAGTATTT
CDS sequence (LotjaGi6g1v0108900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCCACCCGCTGCAAAACACGGCTTCTGGAGAAACATTGTGGTTCGTCTTTTCTCCTTCGCCGTCATCATCTTCGC CGTGAGATTCGCCATCATCACCGCCGTCCAGGGCGGATCTTGCGTCTCATCCGATTTCTGTTTCTTCTCCGACAAACCCA ACATCCCCGCTCACGTCTCCGGCGACCTCTATTGGCGCCGCTCCGTCGAGTACTACGCCGCCGTTTTCCAGGACCTGATC GCCGAGGGTTCCCTTTCCCCCAATTCAAGAATTCTCTGTGTCGACACACCCACCGGCGACGACGTCCTCGCGCTGGAACA GCTCGGCGTCGTCGATTCCGTCGGGATCTTCAAGAAACCGTCGCCGCCGCTGATTGTCCAAGGAGAGGCTCACCGGCATC CGTTTCCTGACGATGCATTCGACTTTGAATTCTCAGGCAGCGGCGGCCTGGAAAGGTCACGGATGCCGGCGGAGTTCGCC GCCGAGATCGGCCGGACTCTTCGGCCGGGTGGGATCCTAGCGGTTCACACGGCGGCGAGAGACGCTTACAGTTTCAATTC TTTCCTTGAATTGTTCAATTGCTGTGAATTGATCAGGACCCGAGACATCAACGGTGTTGATTCATCTCCTCCGGTTCTTG AGATTTTGATGAAGAAGAAAATGCATGAATTTCAAACCCTAGATTCATCCAATTCCATCAGTAAATGCTCTGTTCCAGGT TATAAACGTGAAATAGTAAAAAATGCAGAGGCATTGATAGTGGAAGAACCATTGAAACCTTGGATTACACTGAAGAGGAA TTTGAAGAATGTGAAGTACCTAACTTCATTGGTTGACATAAGCTTTAAGAATAGGTATGTGTATGTTGATGTTGGAGCTA GGAGCTATGGTTCCAGCATAGGAAGCTGGTTCAGGAAACAGTACCCAAAACAGAACAGAACCTTTGAGGTTTATGCAATT GAAGCTGATAAGACATTTCATGAACAGTATAAGACAAGGAAAGGGGTCAGTTTGTTGCCCTATGCAGCTTGGGTGAGGAA TGAGACCTTGTTCTTTGAGATTACCAGAGACCCAAGTGAGAAAGTGATGATGAAAGGTAGAGGGATGGGGAGGATCAACC CTGTGCAAACCTCTTCTAGCCATATGGGTGACAAGGATAAGATTCAGGGTTTTGATTTTGCTGAGTGGTTGAAGAGTGCT GTAACAAGTAGGGATTTTGTGGTTATGAAGATGGATGTGGAAGGGACTGAGTTCCATTTGATTCCAAGATTGATTCAAAC TGGGGCTATCTGTTTGATTGATGAACTGTTCCTTGAATGCCATTACAATAGGTGGCAGAGATGCTGCCCTGGTCAGAGAA GTCCTAAGTATCAGAAGACCTATTCTGAATGCCTGGATTTGTTCACTTCACTCAGAAATATTGGAGTTCTTGTACATCAA TGGTGGTGA
Protein sequence (LotjaGi6g1v0108900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPPAAKHGFWRNIVVRLFSFAVIIFAVRFAIITAVQGGSCVSSDFCFFSDKPNIPAHVSGDLYWRRSVEYYAAVFQDLI AEGSLSPNSRILCVDTPTGDDVLALEQLGVVDSVGIFKKPSPPLIVQGEAHRHPFPDDAFDFEFSGSGGLERSRMPAEFA AEIGRTLRPGGILAVHTAARDAYSFNSFLELFNCCELIRTRDINGVDSSPPVLEILMKKKMHEFQTLDSSNSISKCSVPG YKREIVKNAEALIVEEPLKPWITLKRNLKNVKYLTSLVDISFKNRYVYVDVGARSYGSSIGSWFRKQYPKQNRTFEVYAI EADKTFHEQYKTRKGVSLLPYAAWVRNETLFFEITRDPSEKVMMKGRGMGRINPVQTSSSHMGDKDKIQGFDFAEWLKSA VTSRDFVVMKMDVEGTEFHLIPRLIQTGAICLIDELFLECHYNRWQRCCPGQRSPKYQKTYSECLDLFTSLRNIGVLVHQ WW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 1 | 482 | 482 | 4.7E-282 | – | |
| PANTHER | 1 | 482 | 482 | 4.7E-282 | – | |
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 36 | 23 | - | – | |
| Phobius | 37 | 482 | 446 | - | – | |
| Gene3D | 65 | 199 | 135 | 5.3E-7 | – | |
| SUPERFAMILY | 69 | 185 | 117 | 4.45E-8 | ||
| Pfam | 125 | 175 | 51 | 1.9E-5 | ||
| Gene3D | 268 | 448 | 181 | 1.5E-9 | – | |
| SUPERFAMILY | 272 | 441 | 170 | 9.05E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi6g1v0108900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…